Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 9.2e-86 320.1 150 100.0
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.3e-63 246.5 116 98.3
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 3.1e-57 225.3 117 87.2
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 6.8e-57 224.2 117 86.3
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 3.4e-56 221.9 117 86.3
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 9.9e-56 220.3 117 84.6
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 9.9e-56 220.3 117 84.6
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 9.9e-56 220.3 117 85.5
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 2.2e-55 219.2 117 83.8
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 2.2e-55 219.2 117 83.8
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 2.9e-55 218.8 117 83.8
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 2.9e-55 218.8 117 85.5
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 2.9e-55 218.8 117 83.8
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 4.9e-55 218.0 115 85.2
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 2.4e-54 215.7 117 82.9
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 7.1e-54 214.2 117 82.1
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 7.1e-54 214.2 117 82.1
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 7.1e-54 214.2 119 82.4
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 7.1e-54 214.2 118 83.1
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 9.2e-54 213.8 119 82.4
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 9.2e-54 213.8 122 82.0
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 2.7e-53 212.2 117 80.3
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 3.5e-53 211.8 117 81.2
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 4.6e-53 211.5 118 81.4
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 4.6e-53 211.5 117 82.1
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 4.6e-53 211.5 117 78.6
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 6.0e-53 211.1 117 78.6
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 7.8e-53 210.7 118 82.2
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 1.0e-52 210.3 118 81.4
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 1.0e-52 210.3 121 81.0
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.0e-52 210.3 117 80.3
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 1.3e-52 209.9 117 77.8
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.3e-52 209.9 117 79.5
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.7e-52 209.5 117 81.2
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.3e-52 209.1 117 80.3
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.3e-52 209.1 117 80.3
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 3.0e-52 208.8 117 81.2
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 3.0e-52 208.8 117 79.5
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 3.0e-52 208.8 118 80.5
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 3.0e-52 208.8 113 81.4
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 3.0e-52 208.8 118 81.4
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 3.9e-52 208.4 117 79.5
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 3.9e-52 208.4 117 79.5
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 5.1e-52 208.0 115 79.1
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 8.6e-52 207.2 117 79.5
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.1e-51 206.8 117 79.5
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 1.1e-51 206.8 116 81.0
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 2.5e-51 205.7 118 79.7
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 4.3e-51 204.9 119 79.8
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 4.3e-51 204.9 119 79.8
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 5.6e-51 204.5 115 77.4
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 5.6e-51 204.5 118 78.8
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 5.6e-51 204.5 118 75.4
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 7.3e-51 204.1 117 76.1
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 7.3e-51 204.1 118 79.7
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 7.3e-51 204.1 117 76.9
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 9.6e-51 203.8 117 77.8
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 1.2e-50 203.4 114 80.7
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 1.2e-50 203.4 117 79.5
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 1.6e-50 203.0 117 81.2
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 2.1e-50 202.6 118 75.4
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 2.8e-50 202.2 117 74.4
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 2.8e-50 202.2 119 74.8
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 2.8e-50 202.2 114 80.7
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 4.7e-50 201.4 117 74.4
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.7e-50 201.4 118 78.0
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 4.7e-50 201.4 118 78.0
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 6.2e-50 201.1 117 79.5
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 6.2e-50 201.1 115 78.3
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 6.2e-50 201.1 120 76.7
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 8.1e-50 200.7 117 76.1
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 8.1e-50 200.7 118 78.0
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 1.4e-49 199.9 117 74.4
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 1.4e-49 199.9 114 75.4
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 2.4e-49 199.1 118 77.1
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 5.2e-49 198.0 114 74.6
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 5.2e-49 198.0 114 74.6
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 5.2e-49 198.0 120 75.8
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 5.2e-49 198.0 115 79.1
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 6.9e-49 197.6 114 75.4
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 6.9e-49 197.6 114 76.3
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 6.9e-49 197.6 116 76.7
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 9.0e-49 197.2 117 73.5
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 9.0e-49 197.2 113 76.1
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 9.0e-49 197.2 113 75.2
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 1.2e-48 196.8 117 74.4
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 1.2e-48 196.8 117 74.4
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 1.2e-48 196.8 117 76.9
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 1.2e-48 196.8 119 75.6
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 1.5e-48 196.4 113 75.2
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 1.5e-48 196.4 118 73.7
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.5e-48 196.4 118 74.6
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.0e-48 196.1 118 74.6
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 2.6e-48 195.7 116 74.1
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 2.6e-48 195.7 117 73.5
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 2.6e-48 195.7 117 73.5
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 2.6e-48 195.7 115 80.0
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 4.4e-48 194.9 115 74.8
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 4.4e-48 194.9 113 76.1
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 5.8e-48 194.5 117 77.8
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 5.8e-48 194.5 113 76.1
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 7.6e-48 194.1 117 72.6
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 7.6e-48 194.1 119 73.1
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 9.9e-48 193.7 118 73.7
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.3e-47 193.4 118 74.6
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 3.8e-47 191.8 115 73.0
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.9e-46 189.5 94 96.8
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 1.9e-46 189.5 118 73.7
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 1.9e-46 189.5 116 71.6
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.4e-46 189.1 139 68.3
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.4e-46 189.1 106 82.1
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 3.2e-46 188.7 106 82.1
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 4.2e-46 188.3 119 70.6
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.2e-45 186.8 119 73.1
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 3.5e-45 185.3 114 73.7
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 7.8e-45 184.1 115 73.9
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 7.8e-45 184.1 119 71.4
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 2.3e-44 182.6 118 71.2
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 2.3e-44 182.6 124 70.2
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 1.1e-43 180.3 117 71.8
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 2.5e-43 179.1 117 70.1
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 2.5e-43 179.1 117 70.1
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 5.6e-43 177.9 97 81.4
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 9.6e-43 177.2 104 76.0
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 9.6e-43 177.2 116 69.0
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 9.6e-43 177.2 117 65.0
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 1.6e-42 176.4 116 70.7
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 2.8e-42 175.6 117 73.5
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 1.8e-41 172.9 117 69.2
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 1.8e-41 172.9 117 69.2
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 1.8e-41 172.9 117 69.2
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 1.8e-41 172.9 117 70.1
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 2.4e-41 172.6 117 69.2
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 4.0e-41 171.8 117 65.0
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 1.2e-40 170.2 115 68.7
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 1.2e-40 170.2 115 68.7
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 1.2e-40 170.2 115 68.7
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 2.6e-40 169.1 106 74.5
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 2.9e-39 165.6 116 67.2
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 6.4e-39 164.5 117 65.8
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 8.4e-39 164.1 122 62.3
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 2.4e-38 162.5 98 73.5
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 2.7e-37 159.1 105 69.5
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 7.9e-37 157.5 94 81.9
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 1.3e-36 156.8 94 73.4
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 1.8e-36 156.4 98 71.4
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 1.3e-31 140.2 102 66.7
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 1.7e-31 139.8 117 60.7
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 1.6e-29 133.3 114 59.6
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 2.7e-29 132.5 119 56.3
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 2.0e-24 116.3 67 83.6
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 8.4e-23 110.9 72 75.0
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 4.6e-21 105.1 129 42.6
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 2.0e-16 89.7 73 53.4
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 6.7e-12 74.7 99 44.4
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 1.8e-09 66.6 92 38.0
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 2.5e-06 56.2 78 39.7


User provided reference genes

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