Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 8.0e-255 883.2 442 100.0
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 1.4e-211 739.6 434 83.4
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 6.2e-207 724.2 440 79.5
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 2.2e-204 715.7 478 74.3
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 3.0e-201 705.3 434 79.0
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 4.5e-197 691.4 434 75.8
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 2.9e-196 688.7 433 77.1
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 8.4e-196 687.2 439 77.0
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 1.4e-195 686.4 437 77.1
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 3.2e-195 685.3 437 74.8
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 2.7e-194 682.2 437 77.1
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 4.6e-194 681.4 433 75.5
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 3.0e-193 678.7 439 75.9
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 3.9e-193 678.3 434 75.6
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 5.1e-193 677.9 433 75.5
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 6.7e-193 677.6 433 74.6
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 1.9e-192 676.0 439 73.3
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.5e-192 675.6 429 77.2
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 7.4e-192 674.1 442 74.4
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 7.4e-192 674.1 434 75.1
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 1.3e-191 673.3 441 73.5
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 1.6e-191 672.9 430 75.8
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 3.7e-191 671.8 431 74.7
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 4.8e-191 671.4 433 73.0
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 4.8e-191 671.4 429 76.5
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 6.2e-191 671.0 433 74.8
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 1.1e-190 670.2 431 75.9
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 1.1e-190 670.2 433 74.8
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.8e-190 669.5 429 76.2
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 3.1e-190 668.7 441 73.5
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 1.2e-189 666.8 434 74.2
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 2.0e-189 666.0 430 75.1
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 2.6e-189 665.6 446 71.7
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 3.4e-189 665.2 437 73.5
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 5.8e-189 664.5 431 72.9
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 7.6e-189 664.1 439 73.8
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 2.2e-188 662.5 433 72.3
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 3.8e-188 661.8 439 72.7
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 8.4e-188 660.6 433 72.5
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 1.1e-187 660.2 460 71.7
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 9.3e-187 657.1 437 72.1
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 9.3e-187 657.1 439 70.8
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 1.2e-186 656.8 440 72.3
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 4.6e-186 654.8 437 73.5
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 1.8e-185 652.9 437 73.0
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 3.9e-185 651.7 441 72.8
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 6.7e-185 651.0 441 73.5
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 6.7e-185 651.0 438 72.6
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 3.3e-184 648.7 426 72.5
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 9.6e-184 647.1 441 71.7
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 1.6e-183 646.4 437 72.1
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 2.4e-182 642.5 436 70.9
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 9.0e-182 640.6 426 72.3
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 4.5e-181 638.3 430 72.3
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 4.5e-181 638.3 442 71.0
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 4.5e-181 638.3 428 72.2
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.9e-180 635.6 375 81.9
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 7.1e-179 630.9 430 70.7
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 2.1e-178 629.4 435 70.6
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 2.1e-178 629.4 525 61.1
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 6.0e-178 627.9 430 70.5
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 1.0e-177 627.1 432 70.4
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 1.3e-177 626.7 432 70.4
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 2.3e-177 625.9 432 70.4
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.0e-177 625.5 441 69.4
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 5.1e-177 624.8 430 70.2
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 4.3e-176 621.7 429 69.5
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 7.4e-176 620.9 432 69.9
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 1.5e-173 613.2 434 69.4
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 2.0e-173 612.8 445 70.1
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 1.3e-172 610.1 429 69.2
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 2.9e-172 609.0 434 70.5
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 2.9e-172 609.0 434 70.3
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 1.1e-171 607.1 416 70.7
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 3.2e-171 605.5 440 68.4
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 5.5e-171 604.7 434 70.5
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 2.1e-170 602.8 521 60.3
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 2.3e-169 599.4 474 63.5
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 8.8e-169 597.4 474 62.9
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 1.5e-168 596.7 442 66.3
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 2.0e-168 596.3 416 69.2
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 2.0e-168 596.3 362 80.1
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 1.3e-167 593.6 437 68.4
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 3.1e-166 589.0 473 62.8
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 4.2e-163 578.6 427 66.0
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 7.2e-163 577.8 702 48.3
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 3.6e-162 575.5 434 65.7
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 7.4e-160 567.8 421 67.2
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 1.3e-159 567.0 435 66.4
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 1.3e-159 567.0 456 63.2
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 4.5e-157 558.5 379 71.5
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 5.5e-155 551.6 430 66.7
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.9e-153 545.4 443 63.0
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 2.6e-149 532.7 375 68.8
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 3.5e-149 532.3 726 42.7
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.3e-148 530.4 380 68.2
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.9e-148 529.3 380 67.9
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 3.2e-147 525.8 449 60.8
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 4.2e-147 525.4 430 62.3
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 4.8e-143 511.9 362 69.6
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 1.8e-129 466.8 445 53.7
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 2.6e-128 463.0 300 75.0
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 3.3e-123 446.0 431 51.3
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 7.3e-123 444.9 320 68.4
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 6.1e-122 441.8 295 73.6
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 8.9e-121 438.0 339 65.2
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 3.4e-120 436.0 446 49.6
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 1.1e-115 421.0 341 62.2
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 8.6e-108 394.8 435 48.0
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 4.0e-97 359.4 350 52.3
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 1.4e-89 334.3 221 76.9
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 3.1e-89 333.2 219 74.0
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 5.3e-89 332.4 248 69.0
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 5.6e-75 285.8 437 41.4
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 4.8e-74 282.7 237 64.6
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 1.9e-67 260.8 283 52.3
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 9.0e-65 251.9 429 34.7
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 2.0e-64 250.8 215 62.3
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 4.5e-64 249.6 161 76.4
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.0e-60 238.4 135 81.5
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 2.2e-55 220.7 159 68.6
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 3.2e-54 216.9 142 72.5
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 2.7e-53 213.8 140 73.6
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 6.9e-49 199.1 134 72.4
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.6e-40 170.6 149 52.3
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 5.0e-39 166.4 321 33.3
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 1.8e-36 157.9 200 46.5
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 6.7e-36 156.0 193 47.2
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 5.7e-27 126.3 146 50.0
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 4.1e-25 120.2 111 52.3
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.2e-24 118.6 120 52.5
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 1.8e-20 104.8 79 58.2
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 8.8e-20 102.4 52 80.8
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 1.3e-18 98.6 79 59.5
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 1.1e-17 95.5 79 58.2
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 7.0e-17 92.8 79 57.0
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 3.8e-15 87.0 85 47.1
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 3.0e-12 77.4 44 72.7
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 8.9e-12 75.9 54 66.7
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 3.2e-09 67.4 47 63.8
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 7.0e-09 66.2 43 72.1
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 3.9e-07 60.5 39 76.9


User provided reference genes

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