Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045444 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 3.5e-46 188.0 98 100.0
CSS0003656 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 2.5e-44 181.8 98 95.9
CSS0005454 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 7.4e-28 127.1 85 78.8
CSS0011696 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 7.4e-28 127.1 85 78.8
Dinv04064 Davidia involucrata HOM05D007513 ORTHO05D008148 3.7e-27 124.8 85 75.3
Actinidia03699 Actinidia chinensis HOM05D007513 ORTHO05D008148 1.1e-26 123.2 85 71.8
Dinv26918 Davidia involucrata HOM05D007513 ORTHO05D008148 9.1e-26 120.2 83 74.7
Manes.13G112700 Manihot esculenta HOM05D007513 ORTHO05D008148 3.2e-23 111.7 88 67.0
Rhsim11G0028000 Rhododendron simsii HOM05D007513 ORTHO05D008148 9.4e-23 110.2 83 66.3
Lsat_1_v5_gn_8_19701 Lactuca sativa HOM05D007513 ORTHO05D008148 3.6e-22 108.2 83 67.5
Atru.chr3.153 Acer truncatum HOM05D007513 ORTHO05D008148 6.1e-22 107.5 87 63.2
vmacro14398 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 8.0e-22 107.1 77 68.8
Lsat_1_v5_gn_8_17020 Lactuca sativa HOM05D007513 ORTHO05D008148 1.0e-21 106.7 82 67.1
ClCG10G015420 Citrullus lanatus HOM05D007513 ORTHO05D008148 2.3e-21 105.5 75 69.3
Hma1.2p1_0730F.1_g209790 Hydrangea macrophylla HOM05D007513 ORTHO05D008148 2.3e-21 105.5 81 66.7
CsaV3_3G041080 Cucumis sativus L. HOM05D007513 ORTHO05D008148 3.0e-21 105.1 75 69.3
HanXRQChr08g0219071 Helianthus annuus HOM05D007513 ORTHO05D008148 5.2e-21 104.4 82 65.9
HanXRQChr08g0219141 Helianthus annuus HOM05D007513 ORTHO05D008148 5.2e-21 104.4 82 65.9
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 5.2e-21 104.4 86 61.6
Potri.009G004400 Populus trichocarpa HOM05D007513 ORTHO05D008148 6.7e-21 104.0 75 72.0
Atru.chr3.182 Acer truncatum HOM05D007513 ORTHO05D008148 8.8e-21 103.6 87 60.9
Eucgr.A01208 Eucalyptus grandis HOM05D007513 ORTHO05D008148 8.8e-21 103.6 88 61.4
CiPaw.02G003300 Carya illinoinensis HOM05D007513 ORTHO05D008148 1.5e-20 102.8 85 62.4
Ciclev10023109m.g Citrus clementina HOM05D007513 ORTHO05D008148 2.6e-20 102.1 86 61.6
TWI73G0368 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 3.3e-20 101.7 85 61.2
ECA233G3995 Erigeron canadensis HOM05D007513 ORTHO05D008148 1.3e-19 99.8 82 63.4
Cc04_g16170 Coffea canephora HOM05D007513 ORTHO05D008148 2.2e-19 99.0 80 62.5
vmacro07203 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 2.8e-19 98.6 88 60.2
TWI09G0373 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 4.8e-19 97.8 71 66.2
Sed0010624 Sechium edule HOM05D007513 ORTHO05D008148 8.2e-19 97.1 69 66.7
GSVIVG01023476001 Vitis vinifera HOM05D007513 ORTHO05D008148 3.1e-18 95.1 75 64.0
Thecc.01G071100 Theobroma cacao HOM05D007513 ORTHO05D008148 4.1e-18 94.7 98 54.1
CANSAT01G0833 Cannabis sativa HOM05D007513 ORTHO05D008148 1.2e-17 93.2 74 63.5
unitig_0.g544 Utricularia gibba HOM05D007513 ORTHO05D008148 1.2e-17 93.2 77 63.6
SGA_v2.0_scaffold486G52374 Striga asiatica HOM05D007513 ORTHO05D008148 1.6e-17 92.8 80 57.5
Duzib264G1124 Durio zibethinus HOM05D007513 ORTHO05D008148 7.7e-17 90.5 92 54.3
MELO3C030975.2 Cucumis melo HOM05D007513 ORTHO05D008148 1.3e-16 89.7 66 66.7
MD15G1295400 Malus domestica HOM05D007513 ORTHO05D008148 1.7e-16 89.4 86 59.3
Gohir.D03G027900 Gossypium hirsutum HOM05D007513 ORTHO05D008148 8.5e-16 87.0 66 63.6
Sc16g0003000 Simmondsia chinensis HOM05D007513 ORTHO05D008148 1.9e-15 85.9 77 58.4
Medtr4g088715 Medicago truncatula HOM05D007513 ORTHO05D008148 2.5e-15 85.5 74 58.1
Nitab4.5_0000714g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 2.5e-15 85.5 83 55.4
TPR.G24448 Trifolium pratense HOM05D007513 ORTHO05D008148 2.5e-15 85.5 74 59.5
Aqoxy7G03437 Aquilegia oxysepala HOM05D007513 ORTHO05D008148 3.2e-15 85.1 83 54.2
SalBow6G0964 Salvia bowleyana HOM05D007513 ORTHO05D008148 5.5e-15 84.3 85 51.8
CDE07G2080 Ceratophyllum demersum HOM05D007513 ORTHO05D008148 7.2e-15 84.0 73 54.8
AUR62016920 Chenopodium quinoa HOM05D007513 ORTHO05D008148 9.4e-15 83.6 76 59.2
DCAR_013160 Daucus carota HOM05D007513 ORTHO05D008148 9.4e-15 83.6 57 71.9
MD02G1183800 Malus domestica HOM05D007513 ORTHO05D008148 9.4e-15 83.6 87 55.2
Nitab4.5_0001417g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 1.6e-14 82.8 58 65.5
arahy.Tifrunner.gnm1.ann1.LDCV9W Arachis hypogaea HOM05D007513 ORTHO05D008148 2.1e-14 82.4 67 59.7
Psat6g024240 Pisum sativum HOM05D007513 ORTHO05D008148 2.1e-14 82.4 72 56.9
Ca_18552_v3 Cicer arietinum L. HOM05D007513 ORTHO05D008148 2.7e-14 82.0 61 62.3
Prupe.6G222400 Prunus persica HOM05D007513 ORTHO05D008148 3.6e-14 81.6 57 70.2
Psat6g076840 Pisum sativum HOM05D007513 ORTHO05D008148 4.7e-14 81.3 58 63.8
PGR102G1378 Punica granatum HOM05D007513 ORTHO05D008148 6.1e-14 80.9 66 60.6
arahy.Tifrunner.gnm1.ann1.8F1CK2 Arachis hypogaea HOM05D007513 ORTHO05D008148 1.0e-13 80.1 92 46.7
arahy.Tifrunner.gnm1.ann1.P2RW0X Arachis hypogaea HOM05D007513 ORTHO05D008148 1.4e-13 79.7 92 46.7
DCAR_017173 Daucus carota HOM05D007513 ORTHO05D008148 1.4e-13 79.7 96 47.9
Glyma.06G321800 Glycine max HOM05D007513 ORTHO05D008148 1.8e-13 79.3 62 59.7
arahy.Tifrunner.gnm1.ann1.QIRY5C Arachis hypogaea HOM05D007513 ORTHO05D008148 8.8e-13 77.0 84 50.0
HPP92_010626 Vanilla planifolia HOM05D007513 ORTHO05D008148 1.2e-12 76.6 60 60.0
Phvul.005G004100 Phaseolus vulgaris HOM05D007513 ORTHO05D008148 2.0e-12 75.9 59 57.6
Os03g0205150 Oryza sativa ssp. japonica HOM05D007513 ORTHO05D008148 3.4e-12 75.1 62 51.6
HPP92_010652 Vanilla planifolia HOM05D007513 ORTHO05D008148 7.5e-12 73.9 92 45.7
VMungo1080G1633 Vigna mungo HOM05D007513 ORTHO05D008148 7.5e-12 73.9 56 58.9
Thhalv10027185m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 1.7e-11 72.8 82 43.9
Solyc03g044080.4 Solanum lycopersicum HOM05D007513 ORTHO05D008148 1.7e-11 72.8 73 49.3
Aa31LG6G14500 Aethionema arabicum HOM05D007513 ORTHO05D008148 2.8e-11 72.0 64 51.6
Ah.14g088990 Amaranthus hybridus HOM05D007513 ORTHO05D008148 3.7e-11 71.6 59 55.9
PGSC0003DMG400014868 Solanum tuberosum HOM05D007513 ORTHO05D008148 4.8e-11 71.2 73 50.7
EL10Ac8g20627 Beta vulgaris HOM05D007513 ORTHO05D008148 8.3e-11 70.5 82 43.9
Glyma.04G112900 Glycine max HOM05D007513 ORTHO05D008148 8.3e-11 70.5 60 56.7
Lalb_Chr08g0235081 Lupinus albus HOM05D007513 ORTHO05D008148 8.3e-11 70.5 57 54.4
BcaNung02934 Brassica carinata HOM05D014277 ORTHO05D008148 2.4e-10 68.9 82 43.9
Cpa.g.sc6.31 Carica papaya HOM05D007513 ORTHO05D008148 2.4e-10 68.9 69 55.1
FvH4_1g17450 Fragaria vesca HOM05D015974 ORTHO05D008148 2.4e-10 68.9 90 44.4
FAN19G1675 Fragaria x ananassa HOM05D015974 ORTHO05D008148 2.4e-10 68.9 90 44.4
FAN28G2668 Fragaria x ananassa HOM05D015974 ORTHO05D008148 2.4e-10 68.9 90 44.4
Carub.0004s0224 Capsella rubella HOM05D007513 ORTHO05D008148 3.1e-10 68.6 66 48.5
Lalb_Chr24g0403261 Lupinus albus HOM05D007513 ORTHO05D008148 3.1e-10 68.6 57 52.6
Peaxi162Scf00118g02024 Petunia axillaris HOM05D007513 ORTHO05D008148 7.0e-10 67.4 87 42.5
FAN23G1252 Fragaria x ananassa HOM05D015974 ORTHO05D008148 9.1e-10 67.0 90 43.3
Gohir.A02G152300 Gossypium hirsutum HOM05D045493 ORTHO05D008148 2.7e-09 65.5 144 36.1
RcHm_v2.0_Chr5g0053551 Rosa chinensis HOM05D015974 ORTHO05D008148 4.5e-09 64.7 90 43.3
BcaB03g12338 Brassica carinata HOM05D007513 ORTHO05D008148 7.7e-09 63.9 87 35.6
C07p62480 Brassica napus HOM05D014277 ORTHO05D008148 7.7e-09 63.9 82 41.5
arahy.Tifrunner.gnm1.ann1.S3QGNL Arachis hypogaea HOM05D000640 ORTHO05D008148 1.0e-08 63.5 46 65.2
A08p22690 Brassica napus HOM05D007513 ORTHO05D008148 1.0e-08 63.5 87 34.5
Thhalv10000379m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 1.3e-08 63.2 60 50.0
PSO170G3772 Papaver somniferum HOM05D007513 ORTHO05D008148 1.3e-08 63.2 77 45.5
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 1.7e-08 62.8 49 59.2
COL.COLO4_11560 Corchorus olitorius HOM05D007513 ORTHO05D008148 1.7e-08 62.8 70 51.4
BcaC01g00397 Brassica carinata HOM05D007513 ORTHO05D008148 2.2e-08 62.4 87 34.5
BolC3t20170H Brassica oleracea HOM05D007513 ORTHO05D008148 2.2e-08 62.4 87 34.5
BraA08t34236Z Brassica rapa HOM05D007513 ORTHO05D008148 2.2e-08 62.4 87 34.5
THA.LOC104807627 Tarenaya hassleriana HOM05D007513 ORTHO05D008148 2.2e-08 62.4 88 42.0
arahy.Tifrunner.gnm1.ann1.QIF42D Arachis hypogaea HOM05D007513 ORTHO05D008148 2.9e-08 62.0 67 50.7
arahy.Tifrunner.gnm1.ann1.X3Z0KH Arachis hypogaea HOM05D003009 ORTHO05D008148 3.8e-08 61.6 64 53.1
C03p79260 Brassica napus HOM05D007513 ORTHO05D008148 5.0e-08 61.2 87 33.3
BcaNung02064 Brassica carinata HOM05D014277 ORTHO05D008148 8.5e-08 60.5 82 39.0
RcHm_v2.0_Chr5g0053611 Rosa chinensis HOM05D015974 ORTHO05D008148 1.5e-07 59.7 57 54.4
arahy.Tifrunner.gnm1.ann1.N7EVBW Arachis hypogaea HOM05D007513 ORTHO05D008148 2.5e-07 58.9 44 61.4
arahy.Tifrunner.gnm1.ann1.NLBN4J Arachis hypogaea HOM05D007513 ORTHO05D008148 4.2e-07 58.2 73 45.2
TPR.G16351 Trifolium pratense HOM05D007513 ORTHO05D008148 4.2e-07 58.2 124 33.1
Rhsim01G0211300 Rhododendron simsii HOM05D007513 ORTHO05D008148 5.5e-07 57.8 54 55.6
SEGI_38697 Sequoiadendron giganteum HOM05D007513 ORTHO05D008148 5.5e-07 57.8 52 48.1
Sopen03g007910 Solanum pennellii HOM05D007513 ORTHO05D008148 1.6e-06 56.2 62 46.8
Lj6g0007185 Lotus japonicus HOM05D007513 ORTHO05D008148 6.1e-06 54.3 57 43.9


User provided reference genes

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