Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.3e-103 379.8 199 100.0
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.2e-64 250.4 214 66.4
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 2.0e-64 249.6 198 69.7
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 3.8e-63 245.4 193 69.4
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.7e-61 239.2 214 66.4
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.3e-58 230.3 205 65.9
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.3e-55 220.3 195 63.6
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 4.7e-53 211.8 193 66.3
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 8.8e-52 207.6 199 63.3
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 8.2e-50 201.1 203 59.6
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 3.1e-49 199.1 203 60.1
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 1.6e-48 196.8 203 59.6
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 6.5e-47 191.4 211 55.9
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 5.5e-46 188.3 199 56.8
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 7.2e-46 188.0 163 63.8
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 8.0e-45 184.5 219 52.5
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.5e-43 180.3 215 52.6
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 2.6e-43 179.5 172 62.8
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 7.5e-43 177.9 196 57.1
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 1.3e-42 177.2 205 58.5
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 1.3e-42 177.2 200 56.5
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 1.3e-42 177.2 217 52.5
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 2.8e-42 176.0 184 58.7
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 3.7e-42 175.6 200 53.0
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 3.1e-41 172.6 191 54.5
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 4.1e-41 172.2 210 53.8
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 5.3e-41 171.8 192 54.7
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 1.2e-40 170.6 217 53.0
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 1.6e-40 170.2 209 54.5
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 2.0e-40 169.9 201 56.7
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 3.5e-40 169.1 210 52.4
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 3.5e-40 169.1 188 55.9
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 2.2e-39 166.4 209 53.6
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.9e-39 166.0 206 54.4
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 8.5e-39 164.5 210 53.3
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 8.5e-39 164.5 185 56.2
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 1.1e-38 164.1 210 52.9
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.9e-38 163.3 210 50.0
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 3.2e-38 162.5 193 52.8
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.5e-38 161.8 211 52.1
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 7.2e-38 161.4 195 49.2
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 1.6e-37 160.2 202 48.5
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 8.0e-37 157.9 211 51.2
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.4e-36 157.1 193 54.4
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.8e-36 156.8 211 51.2
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 5.2e-36 155.2 186 48.9
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 2.6e-35 152.9 186 46.8
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 9.8e-35 151.0 167 55.7
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.7e-34 150.2 203 47.8
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.8e-34 148.7 203 48.3
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 6.3e-34 148.3 193 48.2
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 1.1e-33 147.5 189 48.7
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.4e-33 147.1 211 46.4
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 3.1e-33 146.0 165 53.9
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 5.4e-33 145.2 212 48.1
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 7.0e-33 144.8 187 50.8
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 1.6e-32 143.7 189 47.6
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 3.5e-32 142.5 186 48.9
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 7.7e-32 141.4 199 51.8
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 7.7e-32 141.4 212 46.2
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 1.0e-31 141.0 185 49.7
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.3e-31 140.6 196 48.5
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 1.7e-31 140.2 204 50.5
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 2.2e-31 139.8 186 45.2
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 2.2e-31 139.8 181 50.8
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 5.0e-31 138.7 211 46.9
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 8.5e-31 137.9 165 55.2
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 1.2e-29 134.0 194 43.8
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 2.1e-29 133.3 215 43.7
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.1e-29 133.3 187 47.6
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 2.8e-29 132.9 190 43.7
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 8.0e-29 131.3 208 44.2
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 2.3e-28 129.8 203 47.3
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 8.8e-28 127.9 209 45.5
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 2.0e-27 126.7 209 45.0
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.0e-27 126.7 184 48.9
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 3.4e-27 125.9 184 42.9
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 1.7e-26 123.6 188 45.2
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.7e-26 123.6 211 44.1
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 2.2e-26 123.2 177 50.3
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 4.9e-26 122.1 189 43.9
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 1.4e-25 120.6 184 45.7
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 3.1e-25 119.4 182 46.2
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 1.2e-24 117.5 202 41.6
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 2.7e-24 116.3 203 40.4
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 4.5e-24 115.5 195 42.1
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 4.5e-24 115.5 146 51.4
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 5.9e-24 115.2 201 44.8
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 7.8e-24 114.8 187 42.8
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 1.0e-23 114.4 166 48.8
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 1.3e-23 114.0 143 50.3
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 1.1e-22 110.9 190 42.1
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 2.5e-22 109.8 197 43.1
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 2.5e-22 109.8 192 44.3
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 4.3e-22 109.0 210 41.0
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.2e-21 107.5 207 40.6
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.2e-21 107.5 207 40.6
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 1.2e-21 107.5 190 40.0
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 2.1e-21 106.7 192 43.8
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 4.7e-21 105.5 199 42.7
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 6.1e-21 105.1 171 45.6
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 6.1e-21 105.1 184 38.0
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 1.8e-20 103.6 198 42.9
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.3e-20 103.2 181 42.5
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 6.8e-20 101.7 152 46.1
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.5e-19 100.5 209 41.1
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 2.0e-19 100.1 181 42.5
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 2.6e-19 99.8 175 41.1
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 4.4e-19 99.0 176 38.6
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 7.5e-19 98.2 182 42.3
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 7.5e-19 98.2 182 42.3
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 7.5e-19 98.2 182 42.3
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 9.8e-19 97.8 183 42.1
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 9.8e-19 97.8 191 39.8
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.3e-18 97.4 176 40.3
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 4.9e-18 95.5 138 47.1
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 4.9e-18 95.5 182 41.2
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 4.9e-18 95.5 181 41.4
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 8.3e-18 94.7 208 38.9
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 8.3e-18 94.7 184 43.5
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 1.1e-17 94.4 181 40.9
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.8e-17 93.6 170 41.8
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.8e-17 93.6 182 38.5
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 2.4e-17 93.2 179 42.5
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 2.4e-17 93.2 182 40.1
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 2.4e-17 93.2 168 45.8
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 3.2e-17 92.8 194 38.1
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 5.4e-17 92.0 242 33.1
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 7.0e-17 91.7 182 40.7
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 7.0e-17 91.7 192 40.6
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 1.2e-16 90.9 175 41.1
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 2.7e-16 89.7 178 41.0
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 2.7e-16 89.7 181 42.0
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 3.5e-16 89.4 175 41.1
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 4.6e-16 89.0 197 38.6
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 4.6e-16 89.0 197 38.6
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 1.0e-15 87.8 183 39.9
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.3e-15 87.4 196 37.8
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 2.3e-15 86.7 133 50.4
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 3.9e-15 85.9 181 40.9
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 6.6e-15 85.1 125 47.2
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 1.9e-14 83.6 169 39.6
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.2e-13 80.9 198 37.4
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 1.6e-13 80.5 191 37.7
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 2.8e-13 79.7 58 65.5
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 6.2e-13 78.6 190 38.9
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 8.0e-13 78.2 211 33.6
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 2.3e-12 76.6 225 33.8
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 2.6e-11 73.2 181 35.4
CDE05G3057 Ceratophyllum demersum HOM05D067338 ORTHO05D004706 2.6e-11 73.2 192 33.3
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 3.7e-10 69.3 90 46.7
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 1.1e-09 67.8 158 37.3
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 1.9e-09 67.0 93 44.1
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 2.4e-09 66.6 159 39.0
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 5.4e-09 65.5 180 33.3
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 1.2e-08 64.3 162 36.4
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 3.5e-08 62.8 205 31.7
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 4.6e-08 62.4 62 59.7
Os07g0530700 Oryza sativa ssp. japonica HOM05D035907 ORTHO05D004706 6.6e-07 58.5 119 36.1
HPP92_001786 Vanilla planifolia HOM05D033938 ORTHO05D004706 9.5e-06 54.7 59 50.8


User provided reference genes

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