Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 4.1e-87 324.7 165 100.0
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 2.0e-65 252.7 155 82.6
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 4.4e-57 224.9 143 78.3
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 6.4e-56 221.1 155 72.3
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 3.5e-54 215.3 157 70.7
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 3.9e-53 211.8 161 68.3
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 1.9e-52 209.5 157 67.5
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 9.5e-52 207.2 158 67.1
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.6e-51 206.5 151 67.5
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 1.6e-51 206.5 152 69.1
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 2.1e-51 206.1 158 66.5
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 8.1e-51 204.1 170 65.9
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 1.8e-50 203.0 148 68.9
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 2.3e-50 202.6 152 68.4
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 5.2e-50 201.4 152 66.4
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 8.9e-50 200.7 158 65.2
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 1.5e-49 199.9 148 67.6
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 1.5e-49 199.9 148 67.6
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 2.6e-49 199.1 148 66.9
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 3.4e-49 198.7 152 66.4
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 5.8e-49 198.0 150 66.0
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 5.8e-49 198.0 148 66.2
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 5.8e-49 198.0 148 66.9
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 9.8e-49 197.2 150 66.0
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 6.4e-48 194.5 152 65.1
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 8.3e-48 194.1 154 61.0
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.1e-47 193.7 145 66.9
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 1.4e-47 193.4 148 64.9
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 3.2e-47 192.2 153 64.7
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 4.1e-47 191.8 156 59.0
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 4.1e-47 191.8 161 63.4
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 5.4e-47 191.4 172 59.9
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 9.2e-47 190.7 152 64.5
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 2.1e-46 189.5 150 65.3
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 2.1e-46 189.5 148 64.2
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 2.7e-46 189.1 154 60.4
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 4.6e-46 188.3 153 62.7
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 7.8e-46 187.6 150 59.3
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 1.0e-45 187.2 147 63.3
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 1.0e-45 187.2 148 60.8
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 1.0e-45 187.2 148 62.2
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 1.0e-45 187.2 147 62.6
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 1.3e-45 186.8 154 59.1
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 5.1e-45 184.9 150 64.0
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 6.6e-45 184.5 154 57.1
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 1.1e-44 183.7 149 61.1
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 1.9e-44 183.0 154 59.7
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 1.9e-44 183.0 154 59.7
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 1.9e-44 183.0 158 58.9
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 1.9e-44 183.0 148 61.5
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 1.9e-44 183.0 148 60.8
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 2.5e-44 182.6 149 61.7
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 3.3e-44 182.2 148 60.8
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 5.6e-44 181.4 149 60.4
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 7.3e-44 181.0 152 61.8
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 7.3e-44 181.0 150 63.3
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 1.6e-43 179.9 152 61.8
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 2.1e-43 179.5 147 60.5
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 2.1e-43 179.5 148 60.8
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 2.1e-43 179.5 148 58.8
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 2.8e-43 179.1 149 62.4
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 3.6e-43 178.7 154 55.2
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 4.7e-43 178.3 152 59.9
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 4.7e-43 178.3 152 61.2
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 6.2e-43 177.9 148 59.5
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 1.8e-42 176.4 209 49.3
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 2.3e-42 176.0 153 59.5
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 2.3e-42 176.0 154 55.2
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 2.3e-42 176.0 157 55.4
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 3.1e-42 175.6 152 60.5
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 4.0e-42 175.3 154 55.2
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 5.2e-42 174.9 153 60.1
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 6.8e-42 174.5 149 58.4
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 8.9e-42 174.1 148 56.8
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 5.8e-41 171.4 150 53.3
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 5.8e-41 171.4 152 57.9
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 5.8e-41 171.4 152 58.6
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 5.8e-41 171.4 148 60.1
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 7.6e-41 171.0 151 58.9
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.3e-40 170.2 152 57.9
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.2e-40 169.5 146 58.9
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.2e-40 169.5 152 57.2
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 6.4e-40 167.9 163 55.2
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 1.1e-39 167.2 152 57.2
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 2.4e-39 166.0 147 55.8
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 9.2e-39 164.1 152 55.3
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 9.2e-39 164.1 153 51.0
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 7.8e-38 161.0 152 55.3
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 7.8e-38 161.0 152 55.3
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 7.8e-38 161.0 115 70.4
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 2.4e-34 149.4 111 64.9
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 1.2e-33 147.1 143 53.1
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 2.6e-33 146.0 153 54.2
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 2.2e-32 142.9 149 51.0
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 2.9e-32 142.5 109 59.6
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 8.4e-32 141.0 145 48.3
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.1e-31 140.6 157 52.2
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 1.4e-31 140.2 111 61.3
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 1.9e-31 139.8 121 55.4
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 2.1e-30 136.3 109 59.6
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 4.6e-30 135.2 114 60.5
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 1.3e-29 133.7 154 48.1
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 1.7e-29 133.3 154 48.1
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 1.9e-28 129.8 154 46.8
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 3.3e-28 129.0 73 84.9
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 8.1e-27 124.4 87 66.7
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 7.6e-25 117.9 153 41.8
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 4.9e-24 115.2 150 46.0
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 2.4e-23 112.8 150 46.0
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 3.2e-23 112.5 110 48.2
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 1.6e-22 110.2 149 47.0
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 1.6e-22 110.2 151 47.7
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 1.3e-21 107.1 148 46.6
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 1.3e-21 107.1 148 46.6
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 1.3e-21 107.1 148 46.6
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 3.0e-21 105.9 148 46.6
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 6.7e-21 104.8 150 46.0
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 8.7e-21 104.4 151 44.4
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 1.5e-20 103.6 150 43.3
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 1.9e-20 103.2 151 44.4
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 5.3e-18 95.1 131 47.3
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 9.0e-18 94.4 147 42.9
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 7.6e-17 91.3 151 39.7
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 3.2e-15 85.9 56 73.2
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.7e-14 82.8 81 50.6
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 6.0e-14 81.6 156 36.5
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 6.7e-13 78.2 75 52.0
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 8.7e-13 77.8 154 27.9
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.3e-12 75.5 73 50.7
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 5.6e-12 75.1 65 60.0
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 4.8e-11 72.0 119 40.3
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 6.2e-11 71.6 49 75.5
PRCOL_00001147 Prasinoderma coloniale HOM05D003570 ORTHO05D004207 4.0e-10 68.9 130 35.4
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 5.3e-10 68.6 119 40.3
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.0e-09 66.6 42 73.8
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 3.4e-09 65.9 49 65.3


User provided reference genes

Program Settings