Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.0e-46 188.7 95 100.0
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.0e-46 188.7 95 100.0
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 1.1e-20 103.2 80 70.0
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 3.2e-20 101.7 85 71.8
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 4.2e-20 101.3 80 75.0
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 2.0e-17 92.4 87 65.5
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 2.8e-16 88.6 86 59.3
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.1e-15 86.7 79 60.8
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 3.1e-15 85.1 87 62.1
Actinidia04197 Actinidia chinensis HOM05D000749 ORTHO05D004893 7.0e-15 84.0 81 64.2
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 2.0e-14 82.4 84 59.5
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 4.5e-14 81.3 85 58.8
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 5.9e-14 80.9 87 58.6
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 5.9e-14 80.9 87 57.5
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 7.7e-14 80.5 86 55.8
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 1.0e-13 80.1 77 62.3
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.0e-13 80.1 86 55.8
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 2.3e-13 79.0 89 56.2
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 5.0e-13 77.8 87 56.3
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 5.0e-13 77.8 85 58.8
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.1e-12 76.6 88 54.5
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 1.5e-12 76.3 89 58.4
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 1.9e-12 75.9 87 58.6
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.5e-12 75.5 89 53.9
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 3.2e-12 75.1 82 61.0
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.2e-12 75.1 79 58.2
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 4.2e-12 74.7 86 54.7
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 4.2e-12 74.7 83 57.8
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 9.5e-12 73.6 77 61.0
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 2.1e-11 72.4 86 53.5
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 8.0e-11 70.5 82 58.5
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.4e-10 69.7 82 58.5
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.8e-10 69.3 92 45.7
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.8e-10 69.3 92 45.7
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.8e-10 69.3 81 56.8
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.8e-10 69.3 80 57.5
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 3.0e-10 68.6 84 53.6
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 5.2e-10 67.8 96 54.2
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.8e-10 67.4 84 53.6
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 6.8e-10 67.4 84 53.6
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 6.8e-10 67.4 58 72.4
Lalb_Chr05g0211571 Lupinus albus HOM05D005115 ORTHO05D005703 1.5e-09 66.2 81 53.1
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.5e-09 66.2 83 50.6
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 1.5e-09 66.2 90 51.1
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 3.4e-09 65.1 82 52.4
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 3.4e-09 65.1 62 59.7
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 4.4e-09 64.7 63 63.5
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 7.5e-09 63.9 76 53.9
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 7.5e-09 63.9 74 55.4
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.3e-08 63.2 69 60.9
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.3e-08 63.2 69 60.9
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 2.2e-08 62.4 82 53.7
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 2.8e-08 62.0 90 47.8
MD06G1108300 Malus domestica HOM05D005115 ORTHO05D005703 3.7e-08 61.6 61 65.6
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 3.7e-08 61.6 77 50.6
QL02p030259 Quercus lobata HOM05D005115 ORTHO05D005703 3.7e-08 61.6 81 49.4
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 4.9e-08 61.2 82 57.3
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 6.3e-08 60.8 81 55.6
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 6.3e-08 60.8 76 51.3
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 2.4e-07 58.9 64 56.2
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 3.1e-07 58.5 93 45.2
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 3.1e-07 58.5 80 48.8
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 3.1e-07 58.5 88 43.2
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 4.1e-07 58.2 56 55.4
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 9.2e-07 57.0 91 49.5
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.5e-06 55.1 103 46.6
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.5e-06 55.1 103 46.6
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 3.5e-06 55.1 89 49.4
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 4.5e-06 54.7 88 51.1
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 5.9e-06 54.3 52 63.5
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 5.9e-06 54.3 74 45.9
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 7.8e-06 53.9 88 51.1


User provided reference genes

Program Settings