Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 5.5e-206 720.7 357 100.0
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.7e-183 646.0 323 98.1
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 8.7e-151 537.3 323 81.4
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.4e-148 529.3 325 80.6
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.3e-146 523.5 323 80.8
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 2.8e-141 505.8 323 77.4
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.4e-140 502.7 306 80.7
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 2.5e-137 492.7 323 74.3
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 1.1e-134 483.8 329 70.8
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 2.5e-134 482.6 323 72.1
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 5.7e-134 481.5 323 72.4
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 5.7e-134 481.5 363 65.6
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 5.7e-134 481.5 379 66.0
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 4.8e-133 478.4 323 72.4
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 1.1e-132 477.2 392 63.8
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.8e-132 476.5 330 72.4
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 2.4e-132 476.1 324 73.8
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 9.0e-132 474.2 323 71.5
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 1.5e-131 473.4 324 71.0
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 4.5e-131 471.9 324 72.2
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 5.9e-131 471.5 324 72.2
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 1.3e-130 470.3 328 69.5
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 1.9e-129 466.5 323 71.2
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 1.9e-129 466.5 323 71.8
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 7.2e-129 464.5 324 71.0
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.6e-128 462.2 324 71.0
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 2.3e-127 459.5 338 68.0
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.3e-127 459.5 324 70.7
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 5.1e-127 458.4 324 71.3
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 1.1e-126 457.2 324 69.4
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.5e-126 456.1 323 71.2
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 4.3e-126 455.3 323 70.0
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 9.7e-126 454.1 324 69.4
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 9.7e-126 454.1 324 69.8
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 1.6e-125 453.4 325 69.8
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 2.2e-125 453.0 323 70.0
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 2.2e-125 453.0 323 70.0
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 2.2e-125 453.0 327 68.5
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 6.3e-125 451.4 324 71.0
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 8.2e-125 451.1 324 69.4
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.1e-124 450.7 323 68.7
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 1.8e-124 449.9 326 69.3
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 2.9e-122 442.6 325 69.2
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 1.1e-121 440.7 341 65.4
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 1.4e-121 440.3 326 69.6
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 2.5e-121 439.5 325 68.0
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 3.2e-121 439.1 326 68.1
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 4.2e-121 438.7 324 66.0
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 4.2e-121 438.7 323 65.9
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 5.5e-121 438.3 323 66.9
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 7.2e-121 438.0 323 65.0
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.6e-120 435.6 323 67.2
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.0e-119 434.1 323 65.9
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 3.0e-119 432.6 323 65.0
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 5.1e-119 431.8 338 65.1
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 6.7e-119 431.4 323 64.4
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 8.8e-119 431.0 324 67.6
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 2.0e-118 429.9 326 68.1
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 2.6e-118 429.5 324 63.9
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 9.7e-118 427.6 324 63.6
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 3.7e-117 425.6 323 64.4
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 4.8e-117 425.2 323 65.0
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 1.1e-116 424.1 323 65.6
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 1.8e-116 423.3 323 64.1
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 1.8e-116 423.3 311 66.6
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 2.4e-116 422.9 323 65.6
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 4.1e-116 422.2 323 64.4
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 6.9e-116 421.4 324 64.8
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 2.0e-115 419.9 323 65.0
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 1.7e-114 416.8 323 64.1
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.7e-114 416.8 314 66.6
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 2.2e-114 416.4 324 65.4
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 3.8e-114 415.6 323 64.4
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 1.1e-113 414.1 323 65.6
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 1.9e-113 413.3 324 64.5
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 1.9e-113 413.3 324 64.5
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 1.2e-112 410.6 333 61.3
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 2.1e-112 409.8 307 66.4
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 4.7e-112 408.7 323 62.2
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 2.3e-111 406.4 324 62.0
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 5.2e-111 405.2 333 60.1
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 6.7e-111 404.8 327 62.1
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 8.8e-111 404.4 323 62.2
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 2.6e-110 402.9 323 60.7
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 3.3e-110 402.5 349 57.9
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 2.2e-109 399.8 324 61.1
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 4.8e-109 398.7 325 62.8
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 2.4e-108 396.4 359 56.8
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 7.0e-108 394.8 325 62.2
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 5.0e-106 388.7 368 56.2
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.1e-105 387.5 326 62.0
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 1.9e-105 386.7 364 55.2
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 2.5e-105 386.3 323 62.8
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 7.2e-105 384.8 308 62.0
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 9.4e-105 384.4 326 61.3
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 2.1e-104 383.3 326 59.5
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 8.0e-104 381.3 234 77.8
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 1.0e-103 380.9 326 59.5
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.8e-103 380.2 326 59.5
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 3.0e-103 379.4 362 56.1
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 7.5e-102 374.8 249 72.3
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.1e-100 370.9 327 60.9
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 1.1e-100 370.9 324 60.8
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 4.1e-100 369.0 295 63.7
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 1.6e-99 367.1 326 59.2
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 4.2e-97 359.0 285 65.3
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 4.2e-97 359.0 323 60.4
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 1.0e-95 354.4 325 56.3
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 4.0e-95 352.4 346 54.6
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 5.7e-94 348.6 268 64.6
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 7.5e-94 348.2 324 54.0
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 1.7e-93 347.1 362 52.5
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.0e-90 337.8 305 58.7
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 1.3e-90 337.4 329 51.7
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 9.5e-89 331.3 221 70.6
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 5.9e-83 312.0 327 52.3
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 4.1e-76 289.3 294 55.1
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 3.5e-75 286.2 261 58.2
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.3e-73 279.6 326 51.5
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 3.3e-73 279.6 308 49.4
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 3.6e-72 276.2 210 65.7
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 3.4e-70 269.6 211 64.0
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 4.4e-70 269.2 293 50.5
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 4.4e-70 269.2 341 43.1
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 2.7e-67 260.0 247 53.4
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.0e-66 256.5 170 72.9
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.4e-63 247.7 323 44.3
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 6.4e-61 238.8 145 82.1
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 3.0e-58 229.9 172 65.1
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 1.6e-56 224.2 165 67.3
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 7.1e-52 208.8 257 46.7
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 2.1e-51 207.2 163 65.0
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.3e-50 203.8 165 64.2
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 1.1e-49 201.4 145 67.6
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 1.2e-48 198.0 127 77.2
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 4.7e-48 196.1 151 62.3
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 4.6e-43 179.5 341 34.0
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 1.8e-39 167.5 310 34.8
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 2.4e-39 167.2 153 54.9
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 1.2e-38 164.9 260 34.2
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 5.4e-36 156.0 121 65.3
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 1.3e-32 144.8 217 36.4
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 2.8e-32 143.7 120 62.5
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 6.9e-31 139.0 119 57.1
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 1.3e-29 134.8 84 76.2
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 8.4e-29 132.1 303 29.4
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.2e-22 111.7 120 52.5
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 1.1e-20 105.1 74 68.9
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 2.5e-20 104.0 74 68.9
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 2.5e-20 104.0 74 68.9
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 4.2e-20 103.2 96 61.5
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 6.7e-18 95.9 88 52.3
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 1.1e-17 95.1 85 61.2
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 9.7e-17 92.0 66 60.6
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.3e-16 91.7 77 55.8
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 1.0e-13 82.0 58 67.2
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 1.3e-13 81.6 61 67.2
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 1.8e-10 71.2 61 62.3
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 2.3e-10 70.9 62 62.9


User provided reference genes

Program Settings