Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045379 Camellia sinensis var. sinensis HOM05D012301 ORTHO05D013815 1.9e-58 228.8 102 100.0
CSS0005869 Camellia sinensis var. sinensis HOM05D012301 ORTHO05D013815 5.3e-45 184.1 102 78.4
CSS0031335 Camellia sinensis var. sinensis HOM05D012301 ORTHO05D013815 1.0e-43 179.9 102 79.4
CSS0025359 Camellia sinensis var. sinensis HOM05D012301 ORTHO05D013815 5.9e-36 154.1 99 63.6
CSS0024732 Camellia sinensis var. sinensis HOM05D012301 ORTHO05D013815 7.7e-36 153.7 99 62.6
CSS0046961 Camellia sinensis var. sinensis HOM05D012301 ORTHO05D013815 9.1e-29 130.2 99 58.6
CSS0039659 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 8.6e-27 123.6 62 79.0
CSS0005179 Camellia sinensis var. sinensis HOM05D012301 ORTHO05D013815 4.2e-26 121.3 95 50.5
CSS0038721 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 1.6e-25 119.4 82 62.2
CSS0014107 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.0e-24 116.7 99 45.5
CSS0002270 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.3e-24 115.5 89 50.6
CSS0019468 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.0e-24 114.8 95 46.3
CSS0034649 Camellia sinensis var. sinensis HOM05D012301 ORTHO05D013815 4.4e-23 111.3 98 45.9
CSS0001091 Camellia sinensis var. sinensis HOM05D039892 ORTHO05D013815 1.1e-21 106.7 94 42.6
CSS0007673 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.1e-21 106.7 95 42.1
CSS0016353 Camellia sinensis var. sinensis HOM05D002203 ORTHO05D013815 7.8e-20 100.5 104 39.4
CSS0008549 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.3e-19 99.8 95 42.1
CSS0006262 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.9e-19 98.6 95 40.0
CSS0001040 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.3e-16 89.0 97 36.1
CSS0026765 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.4e-13 79.0 96 34.4
Atru.chr4.3084 Acer truncatum HOM05D000003 ORTHO05D000004 3.2e-13 78.6 94 34.0
CSS0011675 Camellia sinensis var. sinensis HOM05D012301 ORTHO05D013815 3.2e-13 78.6 75 40.0
Atru.chr1.3974 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-12 76.6 97 35.1
CSS0024939 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.0e-12 75.9 94 35.1
CSS0044712 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.0e-12 75.9 62 46.8
Atru.chr1.3846 Acer truncatum HOM05D000003 ORTHO05D002259 1.3e-11 73.2 94 33.0
Atru.chr2.915 Acer truncatum HOM05D000003 ORTHO05D000004 8.6e-11 70.5 83 37.3
Atru.chr1.2408 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-10 70.1 98 33.7
Atru.chr6.184 Acer truncatum HOM05D000003 ORTHO05D002259 1.9e-10 69.3 95 26.3
Atru.chr11.1073 Acer truncatum HOM05D000003 ORTHO05D002259 2.5e-10 68.9 94 29.8
CSS0022483 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.3e-10 68.2 55 43.6
CSS0039930 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.3e-10 68.2 55 43.6
Rhsim12G0011400 Rhododendron simsii HOM05D012301 ORTHO05D013815 4.3e-10 68.2 70 37.1
CSS0014831 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 7.3e-10 67.4 100 28.0
Atru.chr7.96 Acer truncatum HOM05D000003 ORTHO05D002259 9.5e-10 67.0 94 31.9
CSS0021010 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 9.5e-10 67.0 66 39.4
Atru.chr5.2369 Acer truncatum HOM05D000003 ORTHO05D002259 1.2e-09 66.6 95 32.6
CSS0011659 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.6e-09 66.2 93 33.3
CSS0029089 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.6e-09 66.2 55 41.8
TWI39G0070 Tripterygium wilfordii HOM05D000003 ORTHO05D002259 2.8e-09 65.5 91 30.8
Atru.chr1.3206 Acer truncatum HOM05D000003 ORTHO05D002259 8.0e-09 63.9 95 27.4
Atru.chr11.1160 Acer truncatum HOM05D000003 ORTHO05D002259 8.0e-09 63.9 95 27.4
Atru.chr4.1973 Acer truncatum HOM05D000003 ORTHO05D002259 8.0e-09 63.9 95 31.6
CSS0010072 Camellia sinensis var. sinensis HOM05D012301 ORTHO05D013815 8.0e-09 63.9 48 54.2
Atru.chr1.787 Acer truncatum HOM05D002354 ORTHO05D002259 1.1e-08 63.5 94 27.7
CSS0008056 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.1e-08 63.5 54 50.0
Atru.chr2.3564 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-08 62.8 95 26.3
Atru.chr6.295 Acer truncatum HOM05D000003 ORTHO05D002259 1.8e-08 62.8 94 27.7
CSS0026307 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.8e-08 62.8 55 40.0
Atru.chr6.713 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-08 62.0 95 27.4
Hma1.2p1_0055F.1_g031300 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 3.1e-08 62.0 92 29.3
Hma1.2p1_1754F.1_g300945 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 3.1e-08 62.0 59 39.0
Atru.chr12.2307 Acer truncatum HOM05D000003 ORTHO05D002259 5.2e-08 61.2 98 29.6
Atru.chr10.59 Acer truncatum HOM05D000003 ORTHO05D002259 8.9e-08 60.5 80 32.5
Atru.chr2.2547 Acer truncatum HOM05D000003 ORTHO05D000004 8.9e-08 60.5 98 27.6
Atru.chr6.296 Acer truncatum HOM05D000003 ORTHO05D002259 1.2e-07 60.1 97 33.0
CSS0042774 Camellia sinensis var. sinensis HOM05D012301 ORTHO05D013815 2.0e-07 59.3 85 29.4
MBI02_g23145_MAGBIO Magnolia biondii HOM05D013504 ORTHO05D000004 2.0e-07 59.3 100 30.0
Atru.chr3.3329 Acer truncatum HOM05D000003 ORTHO05D002259 3.4e-07 58.5 98 27.6
Atru.chr4.1942 Acer truncatum HOM05D000003 ORTHO05D000004 4.4e-07 58.2 98 28.6
Atru.chr9.316 Acer truncatum HOM05D000003 ORTHO05D002259 4.4e-07 58.2 95 27.4
Glyma.05G143850 Glycine max HOM05D013446 ORTHO05D017041 4.4e-07 58.2 79 41.8
Atru.chr2.3295 Acer truncatum HOM05D000003 ORTHO05D000004 9.8e-07 57.0 95 27.4
Atru.chr3.3914 Acer truncatum HOM05D000003 ORTHO05D002259 1.3e-06 56.6 97 27.8
Thecc.04G121700 Theobroma cacao HOM05D000003 ORTHO05D002259 1.3e-06 56.6 97 27.8
TWI14G0536 Tripterygium wilfordii HOM05D008457 ORTHO05D002259 1.3e-06 56.6 98 29.6
Atru.chr2.2918 Acer truncatum HOM05D000003 ORTHO05D000004 2.2e-06 55.8 82 32.9
CSS0006080 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.2e-06 55.8 56 35.7
CSS0014949 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.2e-06 55.8 56 35.7
MBI13_g36728_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 2.2e-06 55.8 54 42.6
Sc24g0002380 Simmondsia chinensis HOM05D003282 ORTHO05D003637 2.2e-06 55.8 53 41.5
Thecc.05G093100 Theobroma cacao HOM05D000003 ORTHO05D002259 2.2e-06 55.8 81 30.9
Atru.chr7.607 Acer truncatum HOM05D000003 ORTHO05D002259 2.9e-06 55.5 68 29.4
Medtr4g093760 Medicago truncatula HOM05D000003 ORTHO05D002335 2.9e-06 55.5 79 38.0
Thecc.05G198700 Theobroma cacao HOM05D000003 ORTHO05D002259 2.9e-06 55.5 69 33.3
Atru.chr12.2402 Acer truncatum HOM05D000003 ORTHO05D002259 3.7e-06 55.1 82 28.0
Atru.chr11.644 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-06 54.7 82 29.3
MBI11_g07707_MAGBIO Magnolia biondii HOM05D013504 ORTHO05D000004 4.9e-06 54.7 53 39.6
CSS0017847 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.4e-06 54.3 56 35.7
MBI02_g02728_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 6.4e-06 54.3 79 32.9


User provided reference genes

Program Settings