Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 9.8e-270 932.9 495 100.0
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.2e-208 729.2 519 78.6
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 2.0e-190 669.5 520 70.8
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.7e-189 666.4 519 71.9
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 2.2e-189 666.0 517 72.9
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 5.0e-189 664.8 519 71.7
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 3.0e-186 655.6 517 72.9
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 3.0e-186 655.6 517 72.9
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 1.7e-181 639.8 517 67.7
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.4e-178 630.2 519 67.2
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 6.8e-178 627.9 519 66.9
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 3.4e-177 625.5 517 67.9
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 1.7e-176 623.2 521 67.2
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 9.2e-175 617.5 521 67.0
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 1.6e-174 616.7 520 67.9
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 2.7e-174 615.9 519 68.0
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 2.7e-174 615.9 517 67.7
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 4.5e-174 615.1 519 68.0
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 4.5e-174 615.1 517 65.4
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 5.9e-174 614.8 517 67.1
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 6.6e-173 611.3 518 68.1
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.9e-172 609.8 519 65.3
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 2.5e-172 609.4 517 66.0
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 4.3e-172 608.6 519 65.7
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 1.2e-171 607.1 519 66.3
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 2.8e-171 605.9 517 67.7
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 2.8e-171 605.9 517 65.8
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 8.0e-171 604.4 519 64.2
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 8.0e-171 604.4 519 66.7
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 1.4e-170 603.6 523 67.3
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 1.4e-170 603.6 517 64.8
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 3.0e-170 602.4 519 65.5
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 4.0e-170 602.1 517 64.6
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 4.0e-170 602.1 517 65.2
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 2.0e-169 599.7 518 67.2
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 2.0e-169 599.7 517 65.6
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 3.4e-169 599.0 517 64.4
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 3.4e-169 599.0 520 67.1
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 4.4e-169 598.6 517 65.4
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 4.4e-169 598.6 519 65.5
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 5.7e-169 598.2 520 67.1
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 4.9e-168 595.1 520 66.5
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 6.4e-168 594.7 517 64.8
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 6.4e-168 594.7 520 66.7
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 1.4e-167 593.6 517 64.8
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.8e-167 593.2 516 63.6
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 2.4e-167 592.8 520 66.3
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 3.2e-167 592.4 517 65.2
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 3.2e-167 592.4 516 67.2
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 7.0e-167 591.3 519 65.1
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 1.6e-166 590.1 523 64.4
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.0e-166 589.7 521 64.1
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.5e-166 589.0 523 64.2
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 5.9e-166 588.2 523 64.2
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.0e-165 587.4 519 64.9
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 1.9e-164 583.2 520 63.3
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 4.3e-164 582.0 531 61.8
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 4.3e-164 582.0 534 62.5
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 3.6e-163 578.9 530 61.3
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 4.7e-163 578.6 516 65.5
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 1.4e-162 577.0 520 63.1
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 5.2e-162 575.1 518 63.7
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 8.9e-162 574.3 531 59.1
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.2e-161 573.9 531 59.1
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 3.4e-161 572.4 517 63.4
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 4.4e-161 572.0 518 64.5
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 3.7e-160 568.9 518 63.7
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 1.1e-159 567.4 524 61.6
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 5.4e-159 565.1 520 62.9
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 9.2e-159 564.3 522 62.8
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.0e-158 563.1 520 62.7
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.6e-158 562.0 524 62.6
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 5.0e-157 558.5 523 63.1
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 1.5e-156 557.0 519 62.2
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 2.5e-156 556.2 520 61.5
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 4.3e-156 555.4 522 61.1
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 7.3e-156 554.7 518 60.0
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 9.5e-156 554.3 521 61.6
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 2.8e-155 552.7 520 59.8
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 2.8e-155 552.7 520 59.8
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 3.6e-155 552.4 518 60.4
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 3.6e-155 552.4 521 61.8
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 4.7e-155 552.0 526 59.9
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 4.7e-155 552.0 528 61.2
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 1.8e-154 550.1 517 60.7
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 1.8e-154 550.1 517 60.7
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 1.8e-154 550.1 517 60.7
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 5.2e-154 548.5 537 59.8
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 8.9e-154 547.7 531 60.5
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 1.2e-153 547.4 520 57.9
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.2e-153 547.4 520 63.1
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.0e-153 546.6 524 61.5
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.1e-151 540.8 525 59.6
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.4e-151 540.4 522 60.7
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 7.1e-151 538.1 529 59.9
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 9.2e-151 537.7 521 60.1
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 1.6e-150 537.0 518 59.1
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 7.8e-150 534.6 530 58.5
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 1.1e-148 530.8 516 60.9
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 3.1e-146 522.7 517 56.9
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 8.9e-146 521.2 517 56.7
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 4.4e-145 518.8 517 57.6
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 4.9e-144 515.4 518 59.5
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 1.4e-143 513.8 525 58.5
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 4.6e-142 508.8 516 59.7
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 1.7e-141 506.9 516 58.3
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 8.6e-141 504.6 517 59.8
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 5.6e-140 501.9 527 58.1
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 7.3e-140 501.5 518 58.1
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 2.1e-139 500.0 522 58.0
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 3.6e-139 499.2 517 60.3
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 9.9e-137 491.1 564 54.4
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.2e-135 486.1 504 58.1
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 5.4e-135 485.3 517 52.8
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 7.8e-134 481.5 531 54.8
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.5e-132 476.5 531 54.4
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 1.9e-127 460.3 536 52.8
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 5.4e-127 458.8 509 53.4
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 2.3e-125 453.4 516 55.6
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.8e-122 443.7 396 64.1
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.3e-122 442.2 524 53.6
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 7.9e-102 375.2 467 52.9
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.3e-100 369.8 397 57.2
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 7.7e-97 358.6 523 45.3
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 1.9e-95 354.0 523 43.4
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 2.6e-92 343.6 517 42.2
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 1.8e-90 337.4 393 52.9
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.3e-88 331.3 504 46.4
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 4.2e-79 299.7 536 36.9
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 7.2e-79 298.9 312 54.8
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.4e-77 294.7 271 62.0
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 4.0e-69 266.5 165 76.4
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 2.3e-64 250.8 238 65.1
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 2.3e-48 197.6 147 67.3
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 6.4e-43 179.5 403 37.2
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 2.3e-37 161.0 471 28.7
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 1.4e-29 135.2 98 63.3
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 5.1e-24 116.7 72 73.6
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 1.2e-20 105.5 214 49.1
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.3e-19 102.1 160 41.2
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 7.3e-15 86.3 409 22.7
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.2e-12 79.0 90 47.8
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.7e-11 75.1 70 58.6
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.6e-09 68.6 42 73.8
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 1.9e-07 61.6 97 41.2


User provided reference genes

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