Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 1.2e-172 609.8 316 100.0
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 4.5e-143 511.5 317 82.6
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 7.7e-143 510.8 316 82.6
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 8.5e-142 507.3 323 81.4
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.8e-139 499.6 339 76.7
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 1.3e-134 483.4 283 83.4
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 2.1e-132 476.1 273 86.8
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 2.1e-132 476.1 273 86.8
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 1.8e-131 473.0 281 81.9
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.2e-130 470.3 343 73.8
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 4.4e-130 468.4 343 73.5
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 5.7e-130 468.0 320 75.0
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 7.5e-130 467.6 316 76.6
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 1.3e-129 466.8 309 76.1
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 2.2e-129 466.1 316 76.3
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 8.3e-129 464.2 315 73.7
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 1.1e-128 463.8 274 82.5
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.1e-128 461.8 383 66.6
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 7.0e-128 461.1 274 81.4
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 2.7e-127 459.1 325 72.9
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 3.5e-127 458.8 319 73.7
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 1.0e-126 457.2 310 74.2
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 1.3e-126 456.8 283 78.8
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 2.3e-126 456.1 282 80.1
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 2.9e-126 455.7 275 80.4
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 1.1e-125 453.8 317 73.5
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 1.9e-125 453.0 275 80.0
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 3.3e-125 452.2 277 79.8
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 4.2e-125 451.8 271 81.5
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 4.2e-125 451.8 317 74.1
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 5.5e-125 451.4 279 79.2
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 5.5e-125 451.4 272 81.2
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.2e-124 450.3 287 78.7
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 1.6e-124 449.9 281 78.3
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.6e-124 449.9 283 78.8
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 1.6e-124 449.9 278 78.8
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 2.1e-124 449.5 278 79.1
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 2.1e-124 449.5 283 78.1
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 3.6e-124 448.7 263 82.9
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 3.6e-124 448.7 281 77.9
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 8.0e-124 447.6 269 81.0
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 8.0e-124 447.6 269 81.0
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.8e-123 446.4 316 72.2
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 3.0e-123 445.7 283 78.1
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 5.2e-123 444.9 316 71.5
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 8.9e-123 444.1 263 82.5
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.2e-122 443.7 320 71.9
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 1.5e-122 443.4 277 79.1
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 2.0e-122 443.0 269 80.3
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 2.0e-122 443.0 316 71.8
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 2.6e-122 442.6 267 80.5
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 2.6e-122 442.6 279 78.5
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 2.6e-122 442.6 275 77.1
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 4.4e-122 441.8 323 70.0
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 7.5e-122 441.0 309 71.5
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 9.8e-122 440.7 281 76.9
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 2.2e-121 439.5 275 76.7
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 2.8e-121 439.1 309 71.2
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 1.1e-120 437.2 283 76.3
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 2.4e-120 436.0 267 79.8
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 4.1e-120 435.3 309 70.9
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 5.4e-120 434.9 307 71.7
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 9.2e-120 434.1 350 65.4
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 1.2e-119 433.7 306 71.6
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 2.7e-119 432.6 306 71.9
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.0e-118 430.6 350 64.9
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 1.7e-118 429.9 272 76.5
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 2.3e-118 429.5 275 75.3
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.9e-118 429.1 305 71.1
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 3.9e-118 428.7 272 75.4
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 5.0e-118 428.3 253 83.4
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 8.6e-118 427.6 272 76.5
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 1.1e-117 427.2 272 77.9
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 1.5e-117 426.8 307 69.4
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 2.5e-117 426.0 258 79.1
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 2.5e-117 426.0 268 76.5
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 4.3e-117 425.2 275 76.0
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 9.5e-117 424.1 272 76.8
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 1.6e-116 423.3 258 78.7
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 2.1e-116 422.9 271 74.5
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 3.6e-116 422.2 275 74.5
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 3.6e-116 422.2 271 75.3
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 3.6e-116 422.2 271 75.3
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 8.0e-116 421.0 271 75.3
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 1.0e-115 420.6 269 76.2
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 1.4e-115 420.2 271 75.3
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 1.2e-114 417.2 271 74.9
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 7.5e-114 414.5 277 73.3
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 9.8e-114 414.1 275 73.5
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 1.9e-112 409.8 285 73.0
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 1.6e-111 406.8 273 74.4
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 6.6e-110 401.4 275 71.3
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 2.3e-107 392.9 249 76.7
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 3.1e-107 392.5 257 72.8
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.5e-106 390.2 296 67.9
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 1.7e-105 386.7 231 80.5
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 2.2e-105 386.3 257 71.6
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 1.4e-104 383.6 251 74.5
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 1.4e-104 383.6 309 65.7
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 3.2e-104 382.5 236 78.8
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 5.4e-104 381.7 260 74.6
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 1.2e-103 380.6 255 73.7
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 1.3e-102 377.1 259 71.0
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 3.9e-102 375.6 272 69.5
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 3.3e-101 372.5 282 63.1
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 5.6e-101 371.7 246 73.6
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 1.8e-99 366.7 221 80.1
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 1.7e-97 360.1 262 69.8
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 2.2e-97 359.8 265 66.0
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 2.3e-94 349.7 258 64.7
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 6.6e-94 348.2 251 70.9
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 6.6e-94 348.2 219 77.2
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.1e-92 343.2 262 65.3
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 4.4e-90 335.5 242 73.1
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 1.3e-89 334.0 265 65.3
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 3.8e-89 332.4 242 71.5
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 8.4e-89 331.3 278 64.4
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.1e-88 330.9 319 58.6
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 5.4e-88 328.6 263 59.7
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 4.6e-87 325.5 262 62.6
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 3.0e-86 322.8 283 58.3
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 2.5e-85 319.7 258 65.5
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 4.0e-83 312.4 174 87.4
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.6e-82 309.7 183 83.1
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 2.1e-79 300.1 274 57.3
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 3.0e-78 296.2 177 80.8
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 1.2e-66 257.7 154 81.8
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.5e-66 257.3 183 72.7
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 4.2e-64 249.2 176 69.3
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 4.6e-63 245.7 170 71.2
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 7.4e-61 238.4 138 85.5
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 3.2e-56 223.0 260 45.8
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 1.5e-53 214.2 150 72.7
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 2.8e-52 209.9 121 83.5
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 2.8e-52 209.9 121 83.5
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 1.4e-51 207.6 168 64.3
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 3.4e-50 203.0 119 81.5
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 3.4e-50 203.0 119 81.5
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 5.9e-50 202.2 125 77.6
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 2.2e-41 173.7 108 79.6
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 3.6e-39 166.4 124 66.1
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 8.8e-38 161.8 126 57.9
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.1e-35 154.8 142 56.3
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 1.2e-34 151.4 263 36.5
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 6.5e-33 145.6 176 47.2
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 1.5e-32 144.4 88 78.4
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 1.2e-31 141.4 204 41.7
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 8.0e-31 138.7 100 68.0
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 6.7e-30 135.6 116 58.6
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 5.7e-29 132.5 88 70.5
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 2.8e-28 130.2 77 85.7
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 6.5e-25 119.0 70 81.4
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.3e-22 110.5 69 76.8
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.2e-21 108.2 72 73.6
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.4e-21 106.3 70 78.6
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 1.3e-20 104.8 72 69.4
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 4.1e-19 99.8 197 38.6
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 1.3e-17 94.7 55 81.8
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 1.3e-17 94.7 55 81.8
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 1.7e-12 77.8 46 76.1
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 6.1e-07 59.3 217 23.5
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 8.9e-06 55.5 34 67.6


User provided reference genes

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