Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 3.3e-209 731.5 375 100.0
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 3.1e-122 442.6 222 99.5
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 9.6e-108 394.4 376 60.1
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 4.7e-107 392.1 387 58.7
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.9e-100 370.2 368 57.6
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.3e-96 357.5 366 56.0
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 3.0e-93 346.3 380 55.8
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.2e-86 324.3 376 50.5
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 1.1e-82 311.2 367 50.7
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 5.8e-81 305.4 378 49.7
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 5.8e-81 305.4 388 49.2
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 8.4e-80 301.6 400 49.5
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 2.7e-78 296.6 383 48.0
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.4e-74 283.5 342 50.0
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 2.0e-73 280.4 367 46.9
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.0e-72 278.1 389 46.3
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 3.8e-72 276.2 368 48.1
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 4.2e-71 272.7 377 46.9
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 7.1e-71 271.9 381 49.1
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 2.1e-70 270.4 380 46.8
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 6.7e-69 265.4 388 45.4
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 2.5e-68 263.5 388 46.1
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 2.5e-68 263.5 389 46.5
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.3e-67 261.2 388 45.9
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 4.1e-66 256.1 385 44.2
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 4.5e-65 252.7 391 42.2
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 7.7e-65 251.9 387 42.1
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 2.2e-64 250.4 376 44.9
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 6.5e-64 248.8 372 43.3
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 2.5e-63 246.9 390 41.3
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 3.2e-63 246.5 379 45.6
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.1e-62 243.8 385 43.6
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 5.7e-60 235.7 372 43.3
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 2.2e-59 233.8 376 42.0
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 4.1e-58 229.6 388 39.2
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 5.3e-58 229.2 372 41.9
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 6.9e-58 228.8 389 40.9
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 6.9e-58 228.8 369 42.0
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 1.2e-57 228.0 373 41.3
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 1.4e-55 221.1 388 38.7
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 3.2e-55 219.9 373 41.6
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 4.2e-55 219.5 377 41.4
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 5.5e-55 219.2 378 39.9
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 7.2e-55 218.8 399 40.9
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 9.4e-55 218.4 376 41.2
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 2.1e-54 217.2 369 41.2
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 2.1e-54 217.2 393 40.2
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 3.6e-54 216.5 379 40.1
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 4.7e-54 216.1 354 42.9
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 6.1e-54 215.7 388 39.7
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 2.3e-53 213.8 362 42.3
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 6.7e-53 212.2 388 40.7
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 6.7e-53 212.2 372 41.4
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 8.8e-53 211.8 388 40.7
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.6e-52 210.3 379 39.8
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 4.4e-52 209.5 384 38.5
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 7.4e-52 208.8 390 39.0
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 9.7e-52 208.4 378 38.9
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.3e-51 208.0 374 38.5
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 2.2e-51 207.2 375 40.5
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 6.3e-51 205.7 385 37.9
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 6.3e-51 205.7 380 38.2
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 2.4e-50 203.8 389 40.1
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 4.1e-50 203.0 383 38.6
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 7.0e-50 202.2 396 39.9
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 7.0e-50 202.2 375 39.7
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 7.0e-50 202.2 375 38.9
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 7.0e-50 202.2 394 38.1
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 7.0e-50 202.2 379 37.7
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.0e-49 200.7 391 38.6
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 2.6e-49 200.3 390 37.4
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 5.9e-49 199.1 384 39.1
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 5.9e-49 199.1 389 38.8
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 7.7e-49 198.7 384 38.0
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 2.2e-48 197.2 385 37.9
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.2e-48 197.2 389 38.3
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 5.0e-48 196.1 372 37.1
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 6.5e-48 195.7 379 38.8
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.5e-47 193.7 380 36.6
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.5e-47 193.7 375 39.5
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 5.5e-47 192.6 390 36.7
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 7.2e-47 192.2 356 39.6
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 7.2e-47 192.2 371 37.2
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 9.4e-47 191.8 382 40.3
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 1.2e-46 191.4 400 36.0
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.2e-46 191.4 398 37.4
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.6e-46 191.0 356 39.6
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 4.7e-46 189.5 399 37.1
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 3.0e-45 186.8 382 36.4
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.0e-45 186.4 381 36.5
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 4.0e-45 186.4 371 38.0
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 6.7e-45 185.7 370 35.9
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 8.8e-45 185.3 372 39.2
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.5e-44 184.5 381 36.5
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 3.3e-44 183.3 374 34.8
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 7.4e-44 182.2 374 37.2
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 9.7e-44 181.8 351 40.5
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 2.2e-43 180.6 383 34.2
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 6.3e-43 179.1 410 35.1
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 8.2e-43 178.7 381 35.4
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 2.4e-42 177.2 374 36.6
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 4.1e-42 176.4 351 39.9
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 7.0e-42 175.6 405 35.3
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 7.0e-42 175.6 368 37.2
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.2e-41 174.9 382 36.1
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 2.0e-41 174.1 405 34.8
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.7e-40 171.0 371 34.5
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.8e-40 169.9 327 39.8
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 6.5e-40 169.1 278 43.2
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 8.5e-40 168.7 371 35.0
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.9e-39 167.5 442 33.5
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 4.2e-39 166.4 368 35.6
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 5.5e-39 166.0 320 40.0
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 1.6e-38 164.5 386 37.3
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 2.7e-38 163.7 352 35.2
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 3.6e-38 163.3 374 36.9
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 6.1e-38 162.5 368 35.1
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 1.0e-37 161.8 384 35.9
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 2.3e-37 160.6 368 34.8
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 3.0e-37 160.2 364 34.9
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 5.2e-37 159.5 376 36.2
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 6.8e-37 159.1 367 34.1
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 6.8e-37 159.1 362 35.9
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 1.5e-36 157.9 382 35.6
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 3.4e-36 156.8 375 36.3
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 3.4e-36 156.8 373 35.9
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 4.4e-36 156.4 367 34.6
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 5.7e-36 156.0 378 37.6
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 5.7e-36 156.0 377 35.5
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 7.5e-36 155.6 390 35.6
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 1.3e-35 154.8 370 34.3
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 1.7e-35 154.5 359 35.9
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 2.8e-35 153.7 379 32.7
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 2.8e-35 153.7 431 31.8
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 2.4e-34 150.6 168 51.2
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 4.1e-34 149.8 404 33.4
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 1.2e-33 148.3 369 33.6
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.6e-33 147.9 375 36.3
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 4.5e-33 146.4 379 32.2
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 5.9e-33 146.0 358 35.2
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 1.0e-32 145.2 372 31.7
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 1.0e-32 145.2 376 33.2
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 1.7e-32 144.4 367 33.2
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 2.2e-32 144.1 364 32.4
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 2.9e-32 143.7 398 32.9
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 3.2e-31 140.2 371 34.2
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 4.2e-31 139.8 378 33.3
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 5.5e-31 139.4 371 33.4
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.2e-30 138.3 262 38.2
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.6e-30 137.9 352 34.4
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 1.6e-30 137.9 396 30.8
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 2.1e-30 137.5 301 35.5
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 2.3e-29 134.0 372 32.0
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 8.8e-29 132.1 337 32.6
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 1.2e-28 131.7 337 32.3
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 1.1e-26 125.2 368 30.7
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 5.4e-26 122.9 390 28.2
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 3.5e-25 120.2 250 35.6
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 7.7e-25 119.0 332 33.4
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 7.2e-23 112.5 356 30.1
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 1.0e-21 108.6 256 33.2
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 2.0e-20 104.4 360 29.7
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 3.7e-19 100.1 166 39.8
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 4.9e-19 99.8 192 38.5
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.9e-16 90.5 207 34.3
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 4.7e-14 83.2 403 26.6
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 8.0e-14 82.4 184 34.8
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 8.9e-13 79.0 352 27.8
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 2.9e-11 73.9 370 25.4
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.9e-10 71.2 196 36.7
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.9e-10 71.2 371 25.1
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 3.2e-10 70.5 216 31.5
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 2.7e-09 67.4 349 27.8
C07p23110 Brassica napus HOM05D003379 ORTHO05D003862 1.0e-08 65.5 242 28.9
C09p44800 Brassica napus HOM05D003379 ORTHO05D003862 1.7e-08 64.7 154 33.8
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 3.0e-08 63.9 380 24.7
C09p09610 Brassica napus HOM05D003379 ORTHO05D003862 3.9e-08 63.5 127 37.0
C08p33300 Brassica napus HOM05D003379 ORTHO05D003862 5.0e-08 63.2 127 34.6
BolC7t42848H Brassica oleracea HOM05D003379 ORTHO05D003862 1.9e-07 61.2 216 31.0
C01p04570 Brassica napus HOM05D003379 ORTHO05D003862 1.6e-06 58.2 213 28.2
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 6.2e-06 56.2 96 33.3


User provided reference genes

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