Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045306 Camellia sinensis var. sinensis HOM05D005994 ORTHO05D007322 7.8e-55 216.9 107 100.0
Rhsim06G0226700 Rhododendron simsii HOM05D005994 ORTHO05D007322 1.2e-50 203.0 100 98.0
Actinidia05033 Actinidia chinensis HOM05D005994 ORTHO05D007322 1.5e-50 202.6 100 98.0
vmacro11561 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 2.6e-50 201.8 100 97.0
Actinidia00094 Actinidia chinensis HOM05D005994 ORTHO05D007322 9.9e-50 199.9 100 96.0
vmacro09668 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 9.9e-50 199.9 100 96.0
ECA246G1213 Erigeron canadensis HOM05D005994 ORTHO05D007322 6.4e-49 197.2 100 95.0
Peaxi162Scf00955g00216 Petunia axillaris HOM05D005994 ORTHO05D007322 8.3e-49 196.8 100 94.0
Aqoxy4G02214 Aquilegia oxysepala HOM05D005994 ORTHO05D007322 1.1e-48 196.4 100 95.0
DCAR_013214 Daucus carota HOM05D005994 ORTHO05D007322 1.1e-48 196.4 101 90.1
HanXRQChr08g0213481 Helianthus annuus HOM05D005994 ORTHO05D007322 1.9e-48 195.7 100 94.0
Nitab4.5_0000163g0320 Nicotiana tabacum HOM05D005994 ORTHO05D007322 1.9e-48 195.7 100 94.0
Nitab4.5_0001750g0060 Nicotiana tabacum HOM05D005994 ORTHO05D007322 1.9e-48 195.7 100 94.0
Cc05_g14690 Coffea canephora HOM05D005994 ORTHO05D007322 3.2e-48 194.9 101 92.1
MSTRG.14470 Avicennia marina HOM05D005994 ORTHO05D007322 4.1e-48 194.5 100 93.0
Oeu005493.1 Olea europaea HOM05D005994 ORTHO05D007322 4.1e-48 194.5 100 93.0
Oeu005968.1 Olea europaea HOM05D005994 ORTHO05D007322 5.4e-48 194.1 100 92.0
SGA_v2.0_scaffold168G38531 Striga asiatica HOM05D005994 ORTHO05D007322 5.4e-48 194.1 100 93.0
unitig_747.g21642 Utricularia gibba HOM05D005994 ORTHO05D007322 7.1e-48 193.7 100 93.0
ATR0564G257 Amborella trichopoda HOM05D005994 ORTHO05D007322 1.2e-47 193.0 100 92.0
Nitab4.5_0000461g0100 Nicotiana tabacum HOM05D005994 ORTHO05D007322 1.2e-47 193.0 99 93.9
Sopen07g033490 Solanum pennellii HOM05D005994 ORTHO05D007322 1.2e-47 193.0 99 94.9
Sed0000308 Sechium edule HOM05D005994 ORTHO05D007322 1.6e-47 192.6 100 92.0
MSTRG.13010 Avicennia marina HOM05D005994 ORTHO05D007322 3.5e-47 191.4 100 90.0
Gorai.010G249300 Gossypium raimondii HOM05D005994 ORTHO05D007322 3.5e-47 191.4 100 90.0
CDE12G0176 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 4.6e-47 191.0 100 91.0
ClCG01G010630 Citrullus lanatus HOM05D005994 ORTHO05D007322 4.6e-47 191.0 100 92.0
Gohir.D06G216900 Gossypium hirsutum HOM05D005994 ORTHO05D007322 4.6e-47 191.0 100 90.0
PSO063G2191 Papaver somniferum HOM05D005994 ORTHO05D007322 4.6e-47 191.0 102 89.2
Solyc07g065275.1 Solanum lycopersicum HOM05D005994 ORTHO05D007322 6.0e-47 190.7 103 89.3
Thecc.06G236600 Theobroma cacao HOM05D005994 ORTHO05D007322 7.8e-47 190.3 100 90.0
CAN.G337.28 Capsicum annuum HOM05D005994 ORTHO05D007322 1.0e-46 189.9 99 92.9
MELO3C025540.2 Cucumis melo HOM05D005994 ORTHO05D007322 1.0e-46 189.9 100 91.0
Duzib235G0800 Durio zibethinus HOM05D005994 ORTHO05D007322 1.0e-46 189.9 100 90.0
Migut.M01676 Erythranthe guttata HOM05D005994 ORTHO05D007322 1.0e-46 189.9 100 90.0
COL.COLO4_07784 Corchorus olitorius HOM05D005994 ORTHO05D007322 1.3e-46 189.5 100 89.0
Gohir.A06G204600 Gossypium hirsutum HOM05D005994 ORTHO05D007322 1.3e-46 189.5 100 89.0
PGSC0003DMG400022186 Solanum tuberosum HOM05D005994 ORTHO05D007322 1.3e-46 189.5 99 92.9
Lsat_1_v5_gn_5_8041 Lactuca sativa HOM05D000063 ORTHO05D000906 1.7e-46 189.1 101 90.1
Manes.09G081660 Manihot esculenta HOM05D005994 ORTHO05D007322 1.7e-46 189.1 100 91.0
Sed0000190 Sechium edule HOM05D005994 ORTHO05D007322 2.3e-46 188.7 100 90.0
arahy.Tifrunner.gnm1.ann1.CR688Y Arachis hypogaea HOM05D005994 ORTHO05D007322 3.9e-46 188.0 100 90.0
arahy.Tifrunner.gnm1.ann1.R43TP7 Arachis hypogaea HOM05D005994 ORTHO05D007322 3.9e-46 188.0 100 90.0
PSO832G1566 Papaver somniferum HOM05D005994 ORTHO05D007322 3.9e-46 188.0 102 88.2
Duzib192G0253 Durio zibethinus HOM05D005994 ORTHO05D007322 5.1e-46 187.6 100 89.0
PGR004G2260 Punica granatum HOM05D005994 ORTHO05D007322 5.1e-46 187.6 100 91.0
Lalb_Chr03g0035721 Lupinus albus HOM05D005994 ORTHO05D007322 6.6e-46 187.2 100 89.0
Glyma.09G011900 Glycine max HOM05D005994 ORTHO05D007322 1.5e-45 186.0 100 89.0
Glyma.15G116500 Glycine max HOM05D005994 ORTHO05D007322 1.5e-45 186.0 100 89.0
Potri.006G016300 Populus trichocarpa HOM05D005994 ORTHO05D007322 1.5e-45 186.0 100 89.0
Sc03g0008000 Simmondsia chinensis HOM05D005994 ORTHO05D007322 1.5e-45 186.0 102 87.3
TWI63G1647 Tripterygium wilfordii HOM05D005994 ORTHO05D007322 2.5e-45 185.3 100 88.0
TPR.G10599 Trifolium pratense HOM05D005994 ORTHO05D007322 3.3e-45 184.9 100 88.0
CDE01G0018 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 4.3e-45 184.5 100 89.0
Ah.06g181210 Amaranthus hybridus HOM05D005994 ORTHO05D007322 5.6e-45 184.1 100 88.0
Lalb_Chr19g0129971 Lupinus albus HOM05D005994 ORTHO05D007322 5.6e-45 184.1 100 86.0
GSVIVG01037779001 Vitis vinifera HOM05D005994 ORTHO05D007322 5.6e-45 184.1 100 88.0
Lj6g0002817 Lotus japonicus HOM05D005994 ORTHO05D007322 7.3e-45 183.7 100 88.0
Sabra06G0011700 Salix brachista HOM05D005994 ORTHO05D007322 7.3e-45 183.7 100 88.0
Haze_06972 Corylus avellana HOM05D005994 ORTHO05D007322 9.5e-45 183.3 100 86.0
CANSAT56G3985 Cannabis sativa HOM05D005994 ORTHO05D007322 1.2e-44 183.0 100 87.0
Prupe.4G007400 Prunus persica HOM05D005994 ORTHO05D007322 1.2e-44 183.0 100 87.0
Phvul.006G141600 Phaseolus vulgaris HOM05D005994 ORTHO05D007322 1.6e-44 182.6 100 87.0
QL05p068624 Quercus lobata HOM05D005994 ORTHO05D007322 1.6e-44 182.6 100 85.0
QL05p068978 Quercus lobata HOM05D005994 ORTHO05D007322 1.6e-44 182.6 100 85.0
EL10Ac4g07614 Beta vulgaris HOM05D005994 ORTHO05D007322 2.1e-44 182.2 100 87.0
BcaNung00192 Brassica carinata HOM05D005994 ORTHO05D007322 2.1e-44 182.2 100 86.0
A01p21090 Brassica napus HOM05D005994 ORTHO05D007322 2.1e-44 182.2 100 86.0
C01p26360 Brassica napus HOM05D005994 ORTHO05D007322 2.1e-44 182.2 100 86.0
Os08g0431500 Oryza sativa ssp. japonica HOM05D005994 ORTHO05D007322 2.1e-44 182.2 99 86.9
Hund23128 Selenicereus undatus HOM05D005994 ORTHO05D007322 2.8e-44 181.8 100 86.0
VMungo0540G2179 Vigna mungo HOM05D005994 ORTHO05D007322 2.8e-44 181.8 100 86.0
MBI04_g07210_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 3.6e-44 181.4 97 90.7
MD00G1058600 Malus domestica HOM05D005994 ORTHO05D007322 4.7e-44 181.0 100 86.0
CARHR222840 Cardamine hirsuta HOM05D005994 ORTHO05D007322 6.2e-44 180.6 100 86.0
Thhalv10026636m.g Eutrema salsugineum HOM05D005994 ORTHO05D007322 6.2e-44 180.6 100 85.0
FAN25G0933 Fragaria x ananassa HOM05D005994 ORTHO05D007322 6.2e-44 180.6 100 84.0
RcHm_v2.0_Chr5g0000881 Rosa chinensis HOM05D005994 ORTHO05D007322 6.2e-44 180.6 100 84.0
AL7G38530 Arabidopsis lyrata HOM05D005994 ORTHO05D007322 8.1e-44 180.3 100 86.0
BcaC09g50351 Brassica carinata HOM05D005994 ORTHO05D007322 8.1e-44 180.3 100 85.0
BolC1t02582H Brassica oleracea HOM05D005994 ORTHO05D007322 8.1e-44 180.3 100 85.0
Carub.0007s2505 Capsella rubella HOM05D005994 ORTHO05D007322 8.1e-44 180.3 100 86.0
Sp7g15010 Schrenkiella parvula HOM05D005994 ORTHO05D007322 8.1e-44 180.3 100 85.0
Medtr2g026500 Medicago truncatula HOM05D005994 ORTHO05D007322 1.1e-43 179.9 100 85.0
HPP92_013264 Vanilla planifolia HOM05D005994 ORTHO05D007322 1.1e-43 179.9 99 85.9
MD10G1336200 Malus domestica HOM05D005994 ORTHO05D007322 1.8e-43 179.1 100 85.0
Aa31LG2G12530 Aethionema arabicum HOM05D005994 ORTHO05D007322 2.4e-43 178.7 100 85.0
FAN21G1761 Fragaria x ananassa HOM05D005994 ORTHO05D007322 2.4e-43 178.7 100 83.0
Cfa000074 Carpinus fangiana HOM05D005994 ORTHO05D007322 3.1e-43 178.3 100 84.0
AUR62017059 Chenopodium quinoa HOM05D005994 ORTHO05D007322 3.1e-43 178.3 100 84.0
Zm00001eb179550 Zea mays HOM05D005994 ORTHO05D007322 3.1e-43 178.3 99 84.8
BcaC06g33480 Brassica carinata HOM05D005994 ORTHO05D007322 4.0e-43 177.9 100 84.0
Potri.016G009600 Populus trichocarpa HOM05D005994 ORTHO05D007322 4.0e-43 177.9 100 86.0
A03p49850 Brassica napus HOM05D005994 ORTHO05D007322 5.2e-43 177.6 96 87.5
C07p47910 Brassica napus HOM05D005994 ORTHO05D007322 5.2e-43 177.6 96 87.5
BolC7t45314H Brassica oleracea HOM05D005994 ORTHO05D007322 5.2e-43 177.6 96 87.5
BraA03t14080Z Brassica rapa HOM05D005994 ORTHO05D007322 5.2e-43 177.6 96 87.5
CsaV3_1G017030 Cucumis sativus L. HOM05D005994 ORTHO05D007322 5.2e-43 177.6 94 89.4
CsaV3_UNG053450 Cucumis sativus L. HOM05D005994 ORTHO05D007322 5.2e-43 177.6 94 89.4
THA.LOC104810390 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 5.2e-43 177.6 100 86.0
AT4G16450 Arabidopsis thaliana HOM05D005994 ORTHO05D007322 6.8e-43 177.2 100 85.0
CiPaw.10G079600 Carya illinoinensis HOM05D005994 ORTHO05D007322 8.9e-43 176.8 95 88.4
Eucgr.D00619 Eucalyptus grandis HOM05D005994 ORTHO05D007322 8.9e-43 176.8 99 83.8
Ca_00743_v3 Cicer arietinum L. HOM05D005994 ORTHO05D007322 2.6e-42 175.3 100 82.0
THA.LOC104815483 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 2.6e-42 175.3 101 85.1
AUR62040659 Chenopodium quinoa HOM05D005994 ORTHO05D007322 3.4e-42 174.9 100 83.0
Ah.04g166430 Amaranthus hybridus HOM05D000063 ORTHO05D000906 5.8e-42 174.1 94 87.2
Psat1g178480 Pisum sativum HOM05D005994 ORTHO05D007322 1.7e-41 172.6 95 85.3
Sabra16G0013400 Salix brachista HOM05D005994 ORTHO05D007322 2.2e-41 172.2 95 86.3
Ciclev10016738m.g Citrus clementina HOM05D005994 ORTHO05D007322 4.9e-41 171.0 124 70.2
FvH4_3g00660 Fragaria vesca HOM05D005994 ORTHO05D007322 6.4e-41 170.6 94 84.0
Peaxi162Scf00285g00824 Petunia axillaris HOM05D005994 ORTHO05D007322 3.5e-39 164.9 97 84.5
MBI04_g36325_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 4.4e-34 147.9 100 77.0
Atru.chr1.2350 Acer truncatum HOM05D005994 ORTHO05D007322 7.1e-32 140.6 100 72.0
SEGI_25373 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 3.9e-30 134.8 78 80.8
Mapoly0008s0024 Marchantia polymorpha HOM05D005994 ORTHO05D007322 6.9e-27 124.0 91 65.9
Pp3c6_28950 Physcomitrium patens HOM05D005994 ORTHO05D007322 5.8e-26 120.9 91 61.5
SEGI_29999 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 2.4e-24 115.5 91 59.3
AagrBONN_evm.TU.Sc2ySwM_368.698 Anthoceros agrestis HOM05D005994 ORTHO05D007322 5.4e-24 114.4 91 58.2
CBR_g41406 Chara braunii HOM05D005994 ORTHO05D007322 3.5e-23 111.7 90 58.9
AagrBONN_evm.TU.Sc2ySwM_117.3129 Anthoceros agrestis HOM05D005994 ORTHO05D007322 7.9e-23 110.5 90 60.0
Nn5g27130 Nelumbo nucifera HOM05D005994 ORTHO05D007322 8.1e-20 100.5 56 87.5
TAR626G0394 Trochodendron aralioides HOM05D005994 ORTHO05D007322 3.1e-19 98.6 51 92.2
Cpa.g.sc3096.1 Carica papaya HOM05D005994 ORTHO05D007322 4.0e-19 98.2 59 76.3
Medtr2g097750 Medicago truncatula HOM05D005994 ORTHO05D007322 2.6e-18 95.5 59 78.0
MCO11G626 Micromonas commoda HOM05D005994 ORTHO05D007322 3.4e-18 95.1 87 55.2
Dinv10313 Davidia involucrata HOM05D005994 ORTHO05D007322 9.9e-18 93.6 94 56.4
Nitab4.5_0005540g0030 Nicotiana tabacum HOM05D005994 ORTHO05D007322 2.4e-16 89.0 52 84.6
HanXRQChr17g0564261 Helianthus annuus HOM05D005994 ORTHO05D007322 3.2e-16 88.6 95 53.7
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 4.2e-16 88.2 51 82.4
SMO223G0003 Selaginella moellendorffii HOM05D005994 ORTHO05D007322 9.3e-16 87.0 87 49.4
Zm00001eb041720 Zea mays HOM05D005994 ORTHO05D007322 7.4e-13 77.4 55 67.3
TAR627G0003 Trochodendron aralioides HOM05D005994 ORTHO05D007322 9.0e-11 70.5 43 81.4


User provided reference genes

Program Settings