Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045295 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D004422 1.0e-125 453.8 294 100.0
CSS0038088 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D004422 1.6e-65 253.8 334 60.5
CSS0048631 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D004422 1.9e-63 246.9 174 76.4
CSS0025082 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D004422 4.3e-63 245.7 174 75.9
CSS0045401 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D004422 7.9e-57 224.9 332 59.9
CSS0030592 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D004422 6.9e-45 185.3 170 61.8
Dinv43591 Davidia involucrata HOM05D000086 ORTHO05D004422 7.6e-44 181.8 177 57.1
Dinv44025 Davidia involucrata HOM05D000086 ORTHO05D004422 3.2e-42 176.4 180 56.1
Lj9A550G67 Lonicera japonica HOM05D000086 ORTHO05D004422 9.6e-39 164.9 178 54.5
Hma1.2p1_0173F.1_g076500 Hydrangea macrophylla HOM05D000086 ORTHO05D004422 4.8e-38 162.5 183 53.6
CSS0017499 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D004422 2.6e-36 156.8 177 53.7
Lj7A551T53 Lonicera japonica HOM05D000086 ORTHO05D004422 2.5e-34 150.2 177 50.8
Nitab4.5_0007434g0010 Nicotiana tabacum HOM05D000086 ORTHO05D004422 7.2e-34 148.7 187 50.3
Nitab4.5_0005064g0030 Nicotiana tabacum HOM05D000086 ORTHO05D004422 2.1e-33 147.1 187 51.3
Actinidia12626 Actinidia chinensis HOM05D000086 ORTHO05D004422 6.1e-33 145.6 186 50.5
Sopen01g035480 Solanum pennellii HOM05D000086 ORTHO05D004422 1.8e-32 144.1 188 50.5
Solyc01g088630.3 Solanum lycopersicum HOM05D000086 ORTHO05D004422 1.1e-31 141.4 188 47.9
PGSC0003DMG400001719 Solanum tuberosum HOM05D000086 ORTHO05D004422 1.9e-31 140.6 188 49.5
Rhsim01G0143200 Rhododendron simsii HOM05D000086 ORTHO05D004422 2.5e-31 140.2 177 52.0
Hma1.2p1_1254F.1_g270570 Hydrangea macrophylla HOM05D000086 ORTHO05D004422 2.8e-30 136.7 179 48.6
Oeu018161.1 Olea europaea HOM05D000086 ORTHO05D004422 6.9e-29 132.1 194 46.4
Peaxi162Scf01569g00002 Petunia axillaris HOM05D000086 ORTHO05D004422 2.6e-28 130.2 190 48.9
Cc02_g25580 Coffea canephora HOM05D000086 ORTHO05D004422 4.5e-28 129.4 193 45.6
DCAR_031018 Daucus carota HOM05D000001 ORTHO05D004422 7.7e-28 128.6 176 51.1
Lsat_1_v5_gn_4_38480 Lactuca sativa HOM05D000086 ORTHO05D004422 1.3e-27 127.9 190 46.3
MSTRG.17110 Avicennia marina HOM05D000086 ORTHO05D004422 1.7e-27 127.5 191 47.6
Nitab4.5_0000735g0050 Nicotiana tabacum HOM05D000086 ORTHO05D004422 5.0e-27 125.9 176 48.9
vmacro13531 Vaccinium macrocarpon HOM05D000086 ORTHO05D004422 6.5e-27 125.6 178 47.2
Lsat_1_v5_gn_1_82780 Lactuca sativa HOM05D000086 ORTHO05D004422 1.4e-26 124.4 188 45.7
Migut.B01490 Erythranthe guttata HOM05D000086 ORTHO05D004422 3.2e-26 123.2 188 48.4
CsaV3_3G010450 Cucumis sativus L. HOM05D000086 ORTHO05D004422 1.2e-25 121.3 171 44.4
ClCG00G002490 Citrullus lanatus HOM05D000086 ORTHO05D004422 6.1e-25 119.0 171 43.9
Sed0027435 Sechium edule HOM05D000086 ORTHO05D004422 7.9e-25 118.6 177 42.9
SGA_v2.0_scaffold52G19265 Striga asiatica HOM05D000086 ORTHO05D004422 1.0e-24 118.2 180 48.3
MELO3C006269.2 Cucumis melo HOM05D000086 ORTHO05D004422 1.4e-24 117.9 172 43.0
Oeu037415.1 Olea europaea HOM05D000086 ORTHO05D004422 2.3e-24 117.1 198 43.4
unitig_750.g28407 Utricularia gibba HOM05D000086 ORTHO05D004422 5.1e-24 115.9 192 46.4
Cfa011026 Carpinus fangiana HOM05D000086 ORTHO05D004422 8.8e-24 115.2 176 41.5
Sed0000015 Sechium edule HOM05D000086 ORTHO05D004422 8.8e-24 115.2 167 41.9
HanXRQChr16g0521031 Helianthus annuus HOM05D000086 ORTHO05D004422 1.1e-23 114.8 179 44.7
Nitab4.5_0000204g0080 Nicotiana tabacum HOM05D000086 ORTHO05D004422 2.0e-23 114.0 170 47.6
Haze_02899 Corylus avellana HOM05D000086 ORTHO05D004422 2.6e-23 113.6 176 40.9
Rhsim07G0039200 Rhododendron simsii HOM05D000086 ORTHO05D004422 3.3e-23 113.2 176 47.2
HanXRQChr01g0017541 Helianthus annuus HOM05D000086 ORTHO05D004422 4.4e-23 112.8 188 43.1
MSTRG.20664 Avicennia marina HOM05D000086 ORTHO05D004422 1.7e-22 110.9 195 43.6
Rhsim07G0039300 Rhododendron simsii HOM05D000086 ORTHO05D004422 1.7e-22 110.9 176 46.0
HanXRQChr12g0383291 Helianthus annuus HOM05D000086 ORTHO05D004422 4.8e-22 109.4 176 43.8
DCAR_025029 Daucus carota HOM05D000086 ORTHO05D004422 8.2e-22 108.6 178 43.8
Cpa.g.sc52.73 Carica papaya HOM05D000086 ORTHO05D004422 1.4e-21 107.8 183 38.8
Thecc.01G402200 Theobroma cacao HOM05D000086 ORTHO05D004422 1.4e-21 107.8 182 40.1
COL.COLO4_12355 Corchorus olitorius HOM05D000086 ORTHO05D004422 5.3e-21 105.9 182 40.7
Duzib138G0523 Durio zibethinus HOM05D000086 ORTHO05D004422 1.5e-20 104.4 174 39.7
Gohir.D08G065600 Gossypium hirsutum HOM05D000086 ORTHO05D004422 1.5e-20 104.4 176 39.2
Gorai.004G067900 Gossypium raimondii HOM05D000086 ORTHO05D004422 1.5e-20 104.4 176 39.2
CiPaw.13G022200 Carya illinoinensis HOM05D000086 ORTHO05D004422 4.5e-20 102.8 178 38.2
CiPaw.14G017100 Carya illinoinensis HOM05D000086 ORTHO05D004422 1.0e-19 101.7 179 38.5
Gohir.A08G056200 Gossypium hirsutum HOM05D000086 ORTHO05D004422 1.0e-19 101.7 176 38.1
Manes.05G058200 Manihot esculenta HOM05D000086 ORTHO05D004422 1.0e-19 101.7 170 38.2
TWI59G0209 Tripterygium wilfordii HOM05D000086 ORTHO05D004422 2.2e-19 100.5 176 41.5
Duzib133G0943 Durio zibethinus HOM05D000086 ORTHO05D004422 8.5e-19 98.6 174 38.5
ECA234G2270 Erigeron canadensis HOM05D000086 ORTHO05D004422 8.5e-19 98.6 174 41.4
CANSAT25G2728 Cannabis sativa HOM05D000086 ORTHO05D004422 2.5e-18 97.1 178 37.6
unitig_0.g1333 Utricularia gibba HOM05D000086 ORTHO05D004422 2.5e-18 97.1 193 38.9
QL02p075861 Quercus lobata HOM05D000086 ORTHO05D004422 3.2e-18 96.7 178 38.2
QL04p026273 Quercus lobata HOM05D000086 ORTHO05D004422 3.2e-18 96.7 178 38.2
Ciclev10020616m.g Citrus clementina HOM05D000086 ORTHO05D004422 5.5e-18 95.9 178 39.3
unitig_26.g8856 Utricularia gibba HOM05D000086 ORTHO05D004422 5.5e-18 95.9 187 41.2
Gohir.D08G161600 Gossypium hirsutum HOM05D000086 ORTHO05D004422 7.2e-18 95.5 174 37.4
TAR636G2273 Trochodendron aralioides HOM05D000086 ORTHO05D004422 1.2e-17 94.7 192 37.5
TAR629G3030 Trochodendron aralioides HOM05D000086 ORTHO05D004422 1.6e-17 94.4 198 37.9
Gorai.004G168000 Gossypium raimondii HOM05D000086 ORTHO05D004422 2.7e-17 93.6 174 36.8
PGR042G1612 Punica granatum HOM05D000086 ORTHO05D004422 3.6e-17 93.2 179 41.9
Ca_23140_v3 Cicer arietinum L. HOM05D000086 ORTHO05D004422 1.4e-16 91.3 175 40.0
Gohir.D12G102100 Gossypium hirsutum HOM05D000086 ORTHO05D004422 1.4e-16 91.3 174 35.6
Gohir.A11G074150 Gossypium hirsutum HOM05D000086 ORTHO05D004422 2.3e-16 90.5 171 37.4
Duzib268G1824 Durio zibethinus HOM05D000086 ORTHO05D004422 3.0e-16 90.1 174 35.6
Sc02g0003250 Simmondsia chinensis HOM05D000086 ORTHO05D004422 3.0e-16 90.1 167 41.9
Potri.014G053600 Populus trichocarpa HOM05D000086 ORTHO05D004422 5.2e-16 89.4 184 37.5
SGA_v2.0_scaffold77G25256 Striga asiatica HOM05D000086 ORTHO05D004422 5.2e-16 89.4 182 41.8
Atru.chr5.46 Acer truncatum HOM05D000086 ORTHO05D004422 6.7e-16 89.0 178 36.5
Atru.chr5.77 Acer truncatum HOM05D000086 ORTHO05D004422 6.7e-16 89.0 178 36.5
Gohir.D11G078850 Gossypium hirsutum HOM05D000086 ORTHO05D004422 6.7e-16 89.0 173 37.0
Gorai.008G111300 Gossypium raimondii HOM05D000086 ORTHO05D004422 6.7e-16 89.0 174 35.1
Sabra14G0040100 Salix brachista HOM05D000086 ORTHO05D004422 6.7e-16 89.0 182 36.8
Gohir.A12G099100 Gossypium hirsutum HOM05D000086 ORTHO05D004422 8.8e-16 88.6 174 35.1
Gorai.007G084400 Gossypium raimondii HOM05D000086 ORTHO05D004422 1.1e-15 88.2 171 36.8
CARHR170530 Cardamine hirsuta HOM05D000086 ORTHO05D004422 1.5e-15 87.8 172 37.8
Nn1g00681 Nelumbo nucifera HOM05D000086 ORTHO05D004422 1.5e-15 87.8 223 35.0
Psat4g221760 Pisum sativum HOM05D000086 ORTHO05D004422 1.5e-15 87.8 171 35.7
AL5G42430 Arabidopsis lyrata HOM05D000086 ORTHO05D004422 2.0e-15 87.4 182 35.2
TWI14G1355 Tripterygium wilfordii HOM05D000086 ORTHO05D004422 2.0e-15 87.4 177 36.2
THA.LOC104817178 Tarenaya hassleriana HOM05D000086 ORTHO05D004422 2.6e-15 87.0 180 40.0
Ca_02285_v3 Cicer arietinum L. HOM05D000086 ORTHO05D004422 5.7e-15 85.9 173 40.5
Lalb_Chr13g0290821 Lupinus albus HOM05D000086 ORTHO05D004422 7.4e-15 85.5 191 36.6
ECA248G1798 Erigeron canadensis HOM05D000086 ORTHO05D004422 9.7e-15 85.1 206 35.9
Thhalv10006088m.g Eutrema salsugineum HOM05D000086 ORTHO05D004422 1.7e-14 84.3 183 37.2
Nn6g33707 Nelumbo nucifera HOM05D000086 ORTHO05D004422 1.7e-14 84.3 209 33.5
Glyma.03G103800 Glycine max HOM05D000086 ORTHO05D004422 4.8e-14 82.8 191 37.7
Carub.0005s2696 Capsella rubella HOM05D000086 ORTHO05D004422 6.3e-14 82.4 178 35.4
Lj3g0001676 Lotus japonicus HOM05D000086 ORTHO05D004422 6.3e-14 82.4 190 36.8
Medtr2g044570 Medicago truncatula HOM05D000086 ORTHO05D004422 6.3e-14 82.4 178 35.4
Aa31LG10G14350 Aethionema arabicum HOM05D000086 ORTHO05D004422 8.2e-14 82.0 188 34.0
Phvul.010G041800 Phaseolus vulgaris HOM05D000086 ORTHO05D004422 1.1e-13 81.6 186 37.1
VMungo0331G0045 Vigna mungo HOM05D000086 ORTHO05D004422 1.1e-13 81.6 186 36.6
C06p26580 Brassica napus HOM05D000086 ORTHO05D004422 1.8e-13 80.9 186 34.4
BcaC08g45028 Brassica carinata HOM05D000086 ORTHO05D004422 2.4e-13 80.5 186 34.4
BcaC08g45039 Brassica carinata HOM05D000086 ORTHO05D004422 2.4e-13 80.5 186 34.4
Glyma.07G120300 Glycine max HOM05D000086 ORTHO05D004422 3.1e-13 80.1 190 35.8
VMungo1309G1397 Vigna mungo HOM05D000086 ORTHO05D004422 3.1e-13 80.1 181 35.9
AT3G60220 Arabidopsis thaliana HOM05D000086 ORTHO05D004422 5.3e-13 79.3 183 34.4
arahy.Tifrunner.gnm1.ann1.FM8SRX Arachis hypogaea HOM05D000086 ORTHO05D004422 7.0e-13 79.0 169 39.1
BcaC07g40416 Brassica carinata HOM05D000086 ORTHO05D004422 7.0e-13 79.0 176 40.9
Glyma.15G183300 Glycine max HOM05D000086 ORTHO05D004422 7.0e-13 79.0 181 38.1
Psat1g137960 Pisum sativum HOM05D000086 ORTHO05D004422 7.0e-13 79.0 172 38.4
Sp5g03000 Schrenkiella parvula HOM05D000086 ORTHO05D004422 7.0e-13 79.0 191 35.6
Ah.05g177660 Amaranthus hybridus HOM05D000086 ORTHO05D004422 9.1e-13 78.6 174 38.5
Aqoxy3G02615 Aquilegia oxysepala HOM05D000086 ORTHO05D004422 9.1e-13 78.6 201 36.8
Gohir.A08G140601 Gossypium hirsutum HOM05D000086 ORTHO05D004422 9.1e-13 78.6 132 40.2
BolC6t37823H Brassica oleracea HOM05D000086 ORTHO05D004422 1.2e-12 78.2 188 35.6
A07p25010 Brassica napus HOM05D000086 ORTHO05D004422 1.6e-12 77.8 192 34.4
Phvul.009G223100 Phaseolus vulgaris HOM05D000086 ORTHO05D004422 2.0e-12 77.4 180 34.4
Medtr8g009190 Medicago truncatula HOM05D000086 ORTHO05D004422 3.5e-12 76.6 182 33.0
BcaB02g07427 Brassica carinata HOM05D000086 ORTHO05D004422 4.5e-12 76.3 194 34.0
BraA07t30141Z Brassica rapa HOM05D000086 ORTHO05D004422 4.5e-12 76.3 196 33.7
Prupe.2G116700 Prunus persica HOM05D000086 ORTHO05D004422 4.5e-12 76.3 184 34.8
Potri.002G140600 Populus trichocarpa HOM05D000086 ORTHO05D004422 1.0e-11 75.1 184 33.7
BcaC07g40521 Brassica carinata HOM05D000086 ORTHO05D004422 1.3e-11 74.7 178 35.4
BraA09t40679Z Brassica rapa HOM05D000086 ORTHO05D004422 1.3e-11 74.7 174 36.2
MD02G1223200 Malus domestica HOM05D000086 ORTHO05D004422 1.7e-11 74.3 178 34.3
BolC8t51118H Brassica oleracea HOM05D000086 ORTHO05D004422 2.2e-11 73.9 178 35.4
FvH4_7g08860 Fragaria vesca HOM05D000086 ORTHO05D004422 2.9e-11 73.6 178 34.8
FAN06G2163 Fragaria x ananassa HOM05D000086 ORTHO05D004422 2.9e-11 73.6 178 34.8
RcHm_v2.0_Chr1g0344271 Rosa chinensis HOM05D000086 ORTHO05D004422 2.9e-11 73.6 175 34.9
FAN10G2821 Fragaria x ananassa HOM05D000086 ORTHO05D004422 3.8e-11 73.2 172 36.0
FAN03G0924 Fragaria x ananassa HOM05D000086 ORTHO05D004422 5.0e-11 72.8 173 36.4
C08p35240 Brassica napus HOM05D000086 ORTHO05D004422 6.5e-11 72.4 178 34.8
Eucgr.E01678 Eucalyptus grandis HOM05D000086 ORTHO05D004422 6.5e-11 72.4 186 36.0
Eucgr.E01704 Eucalyptus grandis HOM05D000086 ORTHO05D004422 6.5e-11 72.4 186 36.0
FAN10G0744 Fragaria x ananassa HOM05D000086 ORTHO05D004422 1.1e-10 71.6 178 35.4
A09p52490 Brassica napus HOM05D000086 ORTHO05D004422 1.5e-10 71.2 171 35.7
FAN01G0686 Fragaria x ananassa HOM05D000086 ORTHO05D004422 4.2e-10 69.7 145 39.3
MD07G1091500 Malus domestica HOM05D000086 ORTHO05D004422 5.5e-10 69.3 176 31.2
BcaC07g40515 Brassica carinata HOM05D000086 ORTHO05D004422 1.6e-09 67.8 166 34.9
Peaxi162Scf00103g00144 Petunia axillaris HOM05D000086 ORTHO05D004422 2.1e-09 67.4 161 37.3
AUR62013786 Chenopodium quinoa HOM05D000086 ORTHO05D004422 5.2e-08 62.8 178 34.8
GSVIVG01018343001 Vitis vinifera HOM05D000086 ORTHO05D004422 6.3e-06 55.8 43 60.5


User provided reference genes

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