Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045290 Camellia sinensis var. sinensis HOM05D053259 ORTHO05D000013 3.6e-177 624.8 307 100.0
CSS0022299 Camellia sinensis var. sinensis HOM05D053259 ORTHO05D000013 3.2e-109 399.1 309 70.9
CSS0042409 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 5.7e-34 149.1 110 70.9
CSS0008184 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 7.5e-34 148.7 110 70.9
CSS0031758 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 7.5e-34 148.7 107 70.1
CSS0001578 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 1.3e-33 147.9 110 70.0
CSS0007981 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 1.3e-33 147.9 110 70.0
CSS0014296 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 1.3e-33 147.9 110 70.0
CSS0025680 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 1.7e-33 147.5 110 70.0
CSS0015352 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 2.2e-33 147.1 110 70.0
CSS0017905 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.3e-33 145.6 110 69.1
CSS0024078 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 6.3e-33 145.6 97 75.3
CSS0015681 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 1.1e-32 144.8 95 72.6
CSS0006340 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.4e-32 144.4 110 70.0
CSS0026252 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.8e-32 144.1 97 75.3
CSS0007859 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 4.1e-32 142.9 97 74.2
CSS0035420 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 4.1e-32 142.9 98 74.5
CSS0000290 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 2.9e-30 136.7 106 66.0
CSS0048468 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 2.5e-29 133.7 106 63.2
CSS0024128 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 5.9e-23 112.5 131 48.1
CSS0029718 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D002159 4.9e-17 92.8 52 82.7
CSS0044101 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D002159 4.9e-17 92.8 52 82.7
Actinidia32323 Actinidia chinensis HOM05D000367 ORTHO05D002159 1.3e-14 84.7 52 78.8
Actinidia20687 Actinidia chinensis HOM05D000367 ORTHO05D002159 2.3e-14 84.0 52 76.9
Rhsim07G0053700 Rhododendron simsii HOM05D000367 ORTHO05D002159 1.1e-13 81.6 52 75.0
Dinv43905 Davidia involucrata HOM05D000367 ORTHO05D002159 2.5e-13 80.5 52 73.1
Dinv43472 Davidia involucrata HOM05D000367 ORTHO05D002159 4.3e-13 79.7 52 73.1
CsaV3_7G031320 Cucumis sativus L. HOM05D000367 ORTHO05D002159 5.6e-13 79.3 67 59.7
vmacro01203 Vaccinium macrocarpon HOM05D000367 ORTHO05D002159 1.6e-12 77.8 78 53.8
MELO3C023526.2 Cucumis melo HOM05D000367 ORTHO05D002159 2.1e-12 77.4 52 71.2
GSVIVG01032045001 Vitis vinifera HOM05D000367 ORTHO05D002159 2.1e-12 77.4 47 83.0
Sed0026143 Sechium edule HOM05D000367 ORTHO05D002159 2.8e-12 77.0 57 64.9
Sed0023878 Sechium edule HOM05D000367 ORTHO05D002159 3.6e-12 76.6 52 69.2
ClCG09G003900 Citrullus lanatus HOM05D000367 ORTHO05D002159 8.0e-12 75.5 52 71.2
Hma1.2p1_1011F.1_g247465 Hydrangea macrophylla HOM05D000367 ORTHO05D002159 1.0e-11 75.1 54 64.8
Ciclev10031530m.g Citrus clementina HOM05D000367 ORTHO05D002159 1.8e-11 74.3 52 71.2
Hma1.2p1_1745F.1_g300280 Hydrangea macrophylla HOM05D000367 ORTHO05D002159 1.5e-10 71.2 45 71.1
Potri.009G065500 Populus trichocarpa HOM05D000367 ORTHO05D002159 2.0e-10 70.9 52 65.4
Duzib133G0442 Durio zibethinus HOM05D000367 ORTHO05D002159 3.4e-10 70.1 48 72.9
Prupe.2G007700 Prunus persica HOM05D000367 ORTHO05D002159 4.4e-10 69.7 52 71.2
vmacro13646 Vaccinium macrocarpon HOM05D000367 ORTHO05D002159 4.4e-10 69.7 53 69.8
CAN.G1393.19 Capsicum annuum HOM05D000367 ORTHO05D002159 5.8e-10 69.3 51 66.7
Lsat_1_v5_gn_4_46221 Lactuca sativa HOM05D000367 ORTHO05D002159 5.8e-10 69.3 57 64.9
TWI73G1149 Tripterygium wilfordii HOM05D000367 ORTHO05D002159 5.8e-10 69.3 52 63.5
ECA234G3345 Erigeron canadensis HOM05D000367 ORTHO05D002159 7.5e-10 68.9 48 72.9
Duzib138G0929 Durio zibethinus HOM05D000367 ORTHO05D002159 1.3e-09 68.2 48 70.8
Lsat_1_v5_gn_7_36181 Lactuca sativa HOM05D000367 ORTHO05D002159 1.3e-09 68.2 51 66.7
Sabra09G0048700 Salix brachista HOM05D000367 ORTHO05D002159 1.7e-09 67.8 52 65.4
Sopen01g033740 Solanum pennellii HOM05D000367 ORTHO05D002159 1.7e-09 67.8 51 66.7
Solyc01g086740.3 Solanum lycopersicum HOM05D000367 ORTHO05D002159 2.2e-09 67.4 51 66.7
PGSC0003DMG400025245 Solanum tuberosum HOM05D000367 ORTHO05D002159 2.2e-09 67.4 51 66.7
TWI53G1193 Tripterygium wilfordii HOM05D000367 ORTHO05D002159 2.2e-09 67.4 52 63.5
CANSAT21G1269 Cannabis sativa HOM05D000367 ORTHO05D002159 2.9e-09 67.0 52 63.5
HanXRQChr17g0563481 Helianthus annuus HOM05D000367 ORTHO05D002159 2.9e-09 67.0 48 68.8
Haze_03249 Corylus avellana HOM05D000367 ORTHO05D002159 3.7e-09 66.6 52 65.4
THA.LOC104819058 Tarenaya hassleriana HOM05D000367 ORTHO05D002159 3.7e-09 66.6 53 64.2
C07p38870 Brassica napus HOM05D000367 ORTHO05D002159 4.9e-09 66.2 57 59.6
Cfa010724 Carpinus fangiana HOM05D000367 ORTHO05D002159 4.9e-09 66.2 52 65.4
Sabra16G0166700 Salix brachista HOM05D000367 ORTHO05D002159 4.9e-09 66.2 85 47.1
Sc14g0005160 Simmondsia chinensis HOM05D000367 ORTHO05D002159 4.9e-09 66.2 56 58.9
Potri.001G271300 Populus trichocarpa HOM05D000367 ORTHO05D002159 6.4e-09 65.9 56 55.4
ECA236G3999 Erigeron canadensis HOM05D000367 ORTHO05D002159 8.3e-09 65.5 48 66.7
Thecc.01G414700 Theobroma cacao HOM05D000367 ORTHO05D002159 8.3e-09 65.5 48 70.8
BcaC06g30829 Brassica carinata HOM05D000367 ORTHO05D002159 1.1e-08 65.1 57 59.6
BolC7t44406H Brassica oleracea HOM05D000367 ORTHO05D002159 1.1e-08 65.1 57 59.6
QL04p003543 Quercus lobata HOM05D000367 ORTHO05D002159 1.1e-08 65.1 52 65.4
QL04p004749 Quercus lobata HOM05D000367 ORTHO05D002159 1.1e-08 65.1 52 65.4
MSTRG.20608 Avicennia marina HOM05D000367 ORTHO05D002159 1.4e-08 64.7 51 62.7
CARHR258390 Cardamine hirsuta HOM05D000367 ORTHO05D002159 1.4e-08 64.7 55 52.7
Gorai.004G065200 Gossypium raimondii HOM05D000367 ORTHO05D002159 1.4e-08 64.7 47 68.1
FAN27G3328 Fragaria x ananassa HOM05D000367 ORTHO05D002159 2.4e-08 63.9 54 63.0
Gohir.A08G053500 Gossypium hirsutum HOM05D000367 ORTHO05D002159 2.4e-08 63.9 47 70.2
Nitab4.5_0004883g0010 Nicotiana tabacum HOM05D000367 ORTHO05D002159 2.4e-08 63.9 51 62.7
BcaB07g30000 Brassica carinata HOM05D000367 ORTHO05D002159 3.2e-08 63.5 53 58.5
CARHR184280 Cardamine hirsuta HOM05D000367 ORTHO05D002159 3.2e-08 63.5 57 54.4
Sp2g18480 Schrenkiella parvula HOM05D000367 ORTHO05D002159 3.2e-08 63.5 57 57.9
Carub.0008s0758 Capsella rubella HOM05D000367 ORTHO05D002159 4.1e-08 63.2 57 54.4
FAN01G1627 Fragaria x ananassa HOM05D000367 ORTHO05D002159 4.1e-08 63.2 47 68.1
FAN01G3019 Fragaria x ananassa HOM05D000367 ORTHO05D002159 4.1e-08 63.2 47 68.1
Gohir.D08G063000 Gossypium hirsutum HOM05D000367 ORTHO05D002159 4.1e-08 63.2 47 66.0
Peaxi162Scf00058g00314 Petunia axillaris HOM05D000367 ORTHO05D002159 4.1e-08 63.2 50 66.0
RcHm_v2.0_Chr1g0314781 Rosa chinensis HOM05D000367 ORTHO05D002159 5.4e-08 62.8 47 66.0
A06p39400 Brassica napus HOM05D000367 ORTHO05D002159 7.0e-08 62.4 53 60.4
BraA06t26855Z Brassica rapa HOM05D000367 ORTHO05D002159 7.0e-08 62.4 53 60.4
DCAR_029634 Daucus carota HOM05D000367 ORTHO05D002159 9.2e-08 62.0 59 50.8
FvH4_7g00600 Fragaria vesca HOM05D000367 ORTHO05D002159 9.2e-08 62.0 47 68.1
FAN06G1089 Fragaria x ananassa HOM05D000367 ORTHO05D002159 9.2e-08 62.0 47 68.1
FAN10G0015 Fragaria x ananassa HOM05D000367 ORTHO05D002159 9.2e-08 62.0 47 68.1
AL8G20290 Arabidopsis lyrata HOM05D000367 ORTHO05D002159 1.2e-07 61.6 57 52.6
Ca_19893_v3 Cicer arietinum L. HOM05D000367 ORTHO05D002159 1.2e-07 61.6 52 61.5
FAN03G2518 Fragaria x ananassa HOM05D000367 ORTHO05D002159 1.2e-07 61.6 47 66.0
Cc02_g27440 Coffea canephora HOM05D000367 ORTHO05D002159 1.6e-07 61.2 55 61.8
PGR031G3372 Punica granatum HOM05D000367 ORTHO05D002159 1.6e-07 61.2 44 63.6
RcHm_v2.0_Chr0c23g0500821 Rosa chinensis HOM05D000367 ORTHO05D002159 1.6e-07 61.2 36 77.8
Aa31LG11G7470 Aethionema arabicum HOM05D000367 ORTHO05D002159 2.0e-07 60.8 52 57.7
AT5G48030 Arabidopsis thaliana HOM05D000367 ORTHO05D002159 2.0e-07 60.8 57 52.6
Glyma.09G003500 Glycine max HOM05D000367 ORTHO05D002159 2.0e-07 60.8 51 60.8
Psat5g198600 Pisum sativum HOM05D000367 ORTHO05D002159 2.0e-07 60.8 52 59.6
arahy.Tifrunner.gnm1.ann1.SY6123 Arachis hypogaea HOM05D000367 ORTHO05D002159 2.7e-07 60.5 68 48.5
arahy.Tifrunner.gnm1.ann1.XHNB7E Arachis hypogaea HOM05D000367 ORTHO05D002159 2.7e-07 60.5 68 48.5
C02p56230 Brassica napus HOM05D001393 ORTHO05D002159 2.7e-07 60.5 53 56.6
FAN15G1768 Fragaria x ananassa HOM05D000367 ORTHO05D002159 2.7e-07 60.5 48 64.6
BcaC03g17626 Brassica carinata HOM05D000367 ORTHO05D002159 3.5e-07 60.1 53 56.6
A02p37200 Brassica napus HOM05D000367 ORTHO05D002159 3.5e-07 60.1 53 56.6
BolC2t11681H Brassica oleracea HOM05D000367 ORTHO05D002159 3.5e-07 60.1 53 56.6
BraA02t08707Z Brassica rapa HOM05D000367 ORTHO05D002159 3.5e-07 60.1 53 56.6
Medtr4g023470 Medicago truncatula HOM05D000367 ORTHO05D002159 3.5e-07 60.1 71 47.9
CiPaw.13G002000 Carya illinoinensis HOM05D000367 ORTHO05D002159 4.6e-07 59.7 51 60.8
Thhalv10004199m.g Eutrema salsugineum HOM05D000367 ORTHO05D002159 4.6e-07 59.7 57 52.6
MD02G1316500 Malus domestica HOM05D000367 ORTHO05D002159 4.6e-07 59.7 37 73.0
Phvul.011G214000 Phaseolus vulgaris HOM05D000367 ORTHO05D002159 4.6e-07 59.7 51 58.8
RcHm_v2.0_Chr6g0284191 Rosa chinensis HOM05D000367 ORTHO05D002159 4.6e-07 59.7 54 59.3
HanXRQChr04g0117371 Helianthus annuus HOM05D000367 ORTHO05D002159 6.0e-07 59.3 51 58.8
Lalb_Chr01g0015241 Lupinus albus HOM05D000367 ORTHO05D002159 6.0e-07 59.3 52 57.7
Lj3g0008595 Lotus japonicus HOM05D000367 ORTHO05D002159 7.8e-07 58.9 52 59.6
Manes.07G003050 Manihot esculenta HOM05D000367 ORTHO05D002159 7.8e-07 58.9 50 60.0
SGA_v2.0_scaffold260G45867 Striga asiatica HOM05D000367 ORTHO05D002159 7.8e-07 58.9 48 62.5
Ca_26435_v3 Cicer arietinum L. HOM05D000367 ORTHO05D002159 1.0e-06 58.5 48 62.5
FvH4_2g18630 Fragaria vesca HOM05D000367 ORTHO05D002159 1.0e-06 58.5 54 57.4
Glyma.12G239500 Glycine max HOM05D000367 ORTHO05D002159 1.0e-06 58.5 51 58.8
AUR62033187 Chenopodium quinoa HOM05D000367 ORTHO05D002159 1.3e-06 58.2 54 57.4
Medtr3g027580 Medicago truncatula HOM05D000367 ORTHO05D002159 1.3e-06 58.2 52 55.8
Psat7g233360 Pisum sativum HOM05D000367 ORTHO05D002159 1.3e-06 58.2 52 57.7
TAR623G0541 Trochodendron aralioides HOM05D000367 ORTHO05D002159 1.3e-06 58.2 49 63.3
VMungo1127G0263 Vigna mungo HOM05D000367 ORTHO05D002159 1.3e-06 58.2 51 58.8
FAN24G2563 Fragaria x ananassa HOM05D000367 ORTHO05D002159 1.7e-06 57.8 48 60.4
Manes.10G147900 Manihot esculenta HOM05D000367 ORTHO05D002159 1.7e-06 57.8 51 58.8
AUR62043122 Chenopodium quinoa HOM05D000367 ORTHO05D002159 2.3e-06 57.4 50 62.0
TPR.G9851 Trifolium pratense HOM05D000367 ORTHO05D002159 2.3e-06 57.4 52 53.8
CSS0041953 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D002159 3.0e-06 57.0 27 96.3
Cpa.g.sc27.174 Carica papaya HOM05D000367 ORTHO05D002159 3.9e-06 56.6 52 53.8
Migut.N01486 Erythranthe guttata HOM05D000367 ORTHO05D002159 3.9e-06 56.6 76 47.4
Eucgr.G03399 Eucalyptus grandis HOM05D000367 ORTHO05D002159 3.9e-06 56.6 44 65.9
VMungo1080G1644 Vigna mungo HOM05D000367 ORTHO05D002159 3.9e-06 56.6 52 53.8
Hund03677 Selenicereus undatus HOM05D000367 ORTHO05D002159 5.0e-06 56.2 56 55.4
HPP92_008358 Vanilla planifolia HOM05D000367 ORTHO05D002159 5.0e-06 56.2 41 63.4
CSS0050221 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D002159 6.6e-06 55.8 36 75.0
Phvul.005G037400 Phaseolus vulgaris HOM05D000367 ORTHO05D002159 6.6e-06 55.8 52 51.9
Zm00001eb269180 Zea mays HOM05D000367 ORTHO05D002159 6.6e-06 55.8 57 50.9
Lj7C567T7 Lonicera japonica HOM05D000367 ORTHO05D002159 8.6e-06 55.5 27 96.3


User provided reference genes

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