Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045261 Camellia sinensis var. sinensis HOM05D004163 ORTHO05D004882 4.8e-149 531.2 276 100.0
CSS0028699 Camellia sinensis var. sinensis HOM05D004163 ORTHO05D004882 2.4e-148 528.9 276 99.3
Actinidia30080 Actinidia chinensis HOM05D004163 ORTHO05D004882 1.5e-102 376.7 291 72.9
Actinidia37588 Actinidia chinensis HOM05D004163 ORTHO05D004882 9.8e-102 374.0 295 71.9
Dinv19207 Davidia involucrata HOM05D004163 ORTHO05D004882 7.0e-100 367.9 290 71.7
vmacro14756 Vaccinium macrocarpon HOM05D004163 ORTHO05D004882 1.5e-94 350.1 284 67.6
Lj2A1132G68 Lonicera japonica HOM05D004163 ORTHO05D004882 5.8e-94 348.2 282 69.5
Rhsim13G0044700 Rhododendron simsii HOM05D004163 ORTHO05D004882 1.7e-93 346.7 284 69.0
Nitab4.5_0006192g0030 Nicotiana tabacum HOM05D004163 ORTHO05D004882 2.4e-92 342.8 281 69.4
vmacro02754 Vaccinium macrocarpon HOM05D004163 ORTHO05D004882 1.2e-91 340.5 286 68.2
Nitab4.5_0000045g0110 Nicotiana tabacum HOM05D004163 ORTHO05D004882 6.0e-91 338.2 281 68.7
Potri.002G241700 Populus trichocarpa HOM05D004163 ORTHO05D004882 6.0e-91 338.2 286 67.5
Sopen09g024070 Solanum pennellii HOM05D004163 ORTHO05D004882 7.8e-91 337.8 274 67.2
TWI18G0775 Tripterygium wilfordii HOM05D004163 ORTHO05D004882 2.3e-90 336.3 286 66.1
PGSC0003DMG400017659 Solanum tuberosum HOM05D004163 ORTHO05D004882 3.0e-90 335.9 274 67.9
Solyc09g061310.3 Solanum lycopersicum HOM05D004163 ORTHO05D004882 6.6e-90 334.7 274 67.2
SGA_v2.0_scaffold1G00744 Striga asiatica HOM05D004163 ORTHO05D004882 2.5e-89 332.8 284 67.6
MD10G1165200 Malus domestica HOM05D004163 ORTHO05D004882 3.3e-89 332.4 281 65.8
Gohir.A11G137300 Gossypium hirsutum HOM05D004163 ORTHO05D004882 4.3e-89 332.0 285 67.7
Eucgr.K02173 Eucalyptus grandis HOM05D004163 ORTHO05D004882 5.6e-89 331.6 285 64.9
Migut.D00532 Erythranthe guttata HOM05D004163 ORTHO05D004882 7.3e-89 331.3 280 66.4
PGR044G0385 Punica granatum HOM05D004163 ORTHO05D004882 7.3e-89 331.3 282 64.5
Sabra02G0184100 Salix brachista HOM05D004163 ORTHO05D004882 7.3e-89 331.3 291 64.9
Gohir.D11G143700 Gossypium hirsutum HOM05D004163 ORTHO05D004882 1.6e-88 330.1 285 67.0
MSTRG.17551 Avicennia marina HOM05D004163 ORTHO05D004882 2.1e-88 329.7 291 64.6
QL09p054666 Quercus lobata HOM05D004163 ORTHO05D004882 2.1e-88 329.7 279 65.9
Gohir.A08G194200 Gossypium hirsutum HOM05D004163 ORTHO05D004882 2.8e-88 329.3 288 64.9
Hma1.2p1_0970F.1_g242660 Hydrangea macrophylla HOM05D004163 ORTHO05D004882 4.7e-88 328.6 284 67.6
Prupe.8G203600 Prunus persica HOM05D004163 ORTHO05D004882 6.2e-88 328.2 281 64.8
Gohir.D08G212000 Gossypium hirsutum HOM05D004163 ORTHO05D004882 8.1e-88 327.8 288 64.6
Atru.chr5.2002 Acer truncatum HOM05D004163 ORTHO05D004882 1.1e-87 327.4 291 63.9
Gorai.004G225400 Gossypium raimondii HOM05D004163 ORTHO05D004882 1.4e-87 327.0 288 64.2
Psat3g145080 Pisum sativum HOM05D004163 ORTHO05D004882 1.4e-87 327.0 282 64.2
GSVIVG01028648001 Vitis vinifera HOM05D004163 ORTHO05D004882 1.4e-87 327.0 281 64.8
CAN.G154.3 Capsicum annuum HOM05D004163 ORTHO05D004882 1.8e-87 326.6 290 64.1
Ca_07522_v3 Cicer arietinum L. HOM05D004163 ORTHO05D004882 1.8e-87 326.6 291 64.9
MD05G1176500 Malus domestica HOM05D004163 ORTHO05D004882 1.8e-87 326.6 281 64.4
CANSAT01G0846 Cannabis sativa HOM05D004163 ORTHO05D004882 2.4e-87 326.2 283 66.4
Manes.12G047002 Manihot esculenta HOM05D004163 ORTHO05D004882 5.2e-87 325.1 286 65.4
RcHm_v2.0_Chr6g0284951 Rosa chinensis HOM05D004163 ORTHO05D004882 6.8e-87 324.7 281 64.8
Hund05534 Selenicereus undatus HOM05D004163 ORTHO05D004882 6.8e-87 324.7 283 65.4
Hund05538 Selenicereus undatus HOM05D004163 ORTHO05D004882 6.8e-87 324.7 283 65.4
Gorai.007G153900 Gossypium raimondii HOM05D004163 ORTHO05D004882 1.2e-86 323.9 285 66.0
Thecc.01G226700 Theobroma cacao HOM05D004163 ORTHO05D004882 1.2e-86 323.9 285 66.0
Manes.13G045400 Manihot esculenta HOM05D004163 ORTHO05D004882 1.5e-86 323.6 288 63.5
Cc01_g17110 Coffea canephora HOM05D004163 ORTHO05D004882 2.0e-86 323.2 296 63.2
FAN15G0391 Fragaria x ananassa HOM05D004163 ORTHO05D004882 2.0e-86 323.2 286 63.3
TWI36G1488 Tripterygium wilfordii HOM05D004163 ORTHO05D004882 2.0e-86 323.2 287 63.4
CiPaw.03G150300 Carya illinoinensis HOM05D004163 ORTHO05D004882 2.6e-86 322.8 290 63.8
FvH4_4g33290 Fragaria vesca HOM05D004163 ORTHO05D004882 2.6e-86 322.8 281 64.4
TAR633G1583 Trochodendron aralioides HOM05D004163 ORTHO05D004882 2.6e-86 322.8 291 63.9
COL.COLO4_08179 Corchorus olitorius HOM05D004163 ORTHO05D004882 3.4e-86 322.4 285 64.6
Nn1g07844 Nelumbo nucifera HOM05D004163 ORTHO05D004882 3.4e-86 322.4 287 64.5
Medtr7g058510 Medicago truncatula HOM05D004163 ORTHO05D004882 4.4e-86 322.0 289 62.3
TPR.G9029 Trifolium pratense HOM05D004163 ORTHO05D004882 7.6e-86 321.2 285 63.9
Cpa.g.sc8.162 Carica papaya HOM05D004163 ORTHO05D004882 9.9e-86 320.9 282 66.0
CiPaw.04G105700 Carya illinoinensis HOM05D004163 ORTHO05D004882 9.9e-86 320.9 289 62.6
MSTRG.21422 Avicennia marina HOM05D004163 ORTHO05D004882 1.3e-85 320.5 291 62.9
Lj1g0012524 Lotus japonicus HOM05D004163 ORTHO05D004882 1.3e-85 320.5 282 63.1
Nn3g19955 Nelumbo nucifera HOM05D004163 ORTHO05D004882 2.2e-85 319.7 286 63.6
Lalb_Chr01g0022371 Lupinus albus HOM05D004163 ORTHO05D004882 1.9e-84 316.6 282 63.1
Duzib133G0118 Durio zibethinus HOM05D004163 ORTHO05D004882 3.2e-84 315.8 282 62.8
FAN27G1937 Fragaria x ananassa HOM05D004163 ORTHO05D004882 3.2e-84 315.8 279 63.1
Glyma.08G354700 Glycine max HOM05D004163 ORTHO05D004882 3.2e-84 315.8 283 63.6
Aqoxy2G03890 Aquilegia oxysepala HOM05D004163 ORTHO05D004882 4.1e-84 315.5 280 64.3
CDE02G0060 Ceratophyllum demersum HOM05D004163 ORTHO05D004882 5.4e-84 315.1 277 62.1
Lalb_Chr03g0041791 Lupinus albus HOM05D004163 ORTHO05D004882 1.2e-83 313.9 282 61.3
HanXRQChr10g0279771 Helianthus annuus HOM05D004163 ORTHO05D004882 1.6e-83 313.5 282 63.1
VMungo1383G2575 Vigna mungo HOM05D004163 ORTHO05D004882 2.1e-83 313.2 283 61.5
arahy.Tifrunner.gnm1.ann1.IH4GAK Arachis hypogaea HOM05D004163 ORTHO05D004882 3.5e-83 312.4 275 62.9
Ciclev10021450m.g Citrus clementina HOM05D004163 ORTHO05D004882 7.8e-83 311.2 291 60.1
MBI10_g18940_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 7.8e-83 311.2 295 61.4
Peaxi162Scf00107g01625 Petunia axillaris HOM05D004163 ORTHO05D004882 7.8e-83 311.2 299 60.9
Phvul.008G125200 Phaseolus vulgaris HOM05D004163 ORTHO05D004882 7.8e-83 311.2 282 61.0
arahy.Tifrunner.gnm1.ann1.PP5Q2Q Arachis hypogaea HOM05D004163 ORTHO05D004882 1.0e-82 310.8 280 61.8
HanXRQChr15g0468291 Helianthus annuus HOM05D004163 ORTHO05D004882 1.7e-82 310.1 282 63.8
ECA247G0816 Erigeron canadensis HOM05D004163 ORTHO05D004882 2.3e-82 309.7 282 62.8
PSO832G2991 Papaver somniferum HOM05D004163 ORTHO05D004882 2.3e-82 309.7 278 62.9
PSO339G4819 Papaver somniferum HOM05D004163 ORTHO05D004882 6.6e-82 308.1 278 62.6
PSO339G2763 Papaver somniferum HOM05D004163 ORTHO05D004882 8.7e-82 307.8 278 62.6
THA.LOC104822505 Tarenaya hassleriana HOM05D004163 ORTHO05D004882 1.1e-81 307.4 288 61.1
ClCG09G009070 Citrullus lanatus HOM05D004163 ORTHO05D004882 1.5e-81 307.0 282 62.1
PSO675G2819 Papaver somniferum HOM05D004163 ORTHO05D004882 1.5e-81 307.0 274 63.1
AUR62008905 Chenopodium quinoa HOM05D004163 ORTHO05D004882 1.9e-81 306.6 296 59.1
CsaV3_7G025890 Cucumis sativus L. HOM05D004163 ORTHO05D004882 2.5e-81 306.2 282 61.7
Glyma.18G170900 Glycine max HOM05D004163 ORTHO05D004882 4.3e-81 305.4 275 62.9
DCAR_012637 Daucus carota HOM05D004163 ORTHO05D004882 8.1e-80 301.2 282 60.6
BcaC05g29756 Brassica carinata HOM05D004163 ORTHO05D004882 1.8e-79 300.1 283 60.1
Aa31LG5G17650 Aethionema arabicum HOM05D004163 ORTHO05D004882 2.4e-79 299.7 279 58.4
Aa31sc164G40 Aethionema arabicum HOM05D004163 ORTHO05D004882 1.2e-78 297.4 284 59.5
Sed0020546 Sechium edule HOM05D004163 ORTHO05D004882 4.4e-78 295.4 287 57.1
BolC5t34677H Brassica oleracea HOM05D001545 ORTHO05D001600 5.8e-78 295.0 279 57.3
ATR0736G127 Amborella trichopoda HOM05D004163 ORTHO05D004882 9.9e-78 294.3 284 59.9
C05p60290 Brassica napus HOM05D001545 ORTHO05D001600 1.3e-77 293.9 279 57.3
BcaC05g29838 Brassica carinata HOM05D004163 ORTHO05D004882 1.7e-77 293.5 279 57.0
BraA05t22837Z Brassica rapa HOM05D001545 ORTHO05D001600 1.7e-77 293.5 279 57.3
Sed0004920 Sechium edule HOM05D004163 ORTHO05D004882 2.9e-77 292.7 287 57.5
unitig_22.g6322 Utricularia gibba HOM05D004163 ORTHO05D004882 8.4e-77 291.2 277 59.2
AT3G07090 Arabidopsis thaliana HOM05D004163 ORTHO05D004882 2.4e-76 289.7 283 56.2
AUR62031805 Chenopodium quinoa HOM05D004163 ORTHO05D004882 4.2e-76 288.9 292 58.2
DCAR_000532 Daucus carota HOM05D004163 ORTHO05D004882 4.2e-76 288.9 283 58.0
AL3G18320 Arabidopsis lyrata HOM05D004163 ORTHO05D004882 1.2e-75 287.3 277 57.8
Carub.0003s0660 Capsella rubella HOM05D004163 ORTHO05D004882 1.2e-75 287.3 283 55.5
Thhalv10021308m.g Eutrema salsugineum HOM05D004163 ORTHO05D004882 1.2e-75 287.3 279 56.6
Zm00001eb258670 Zea mays HOM05D004163 ORTHO05D004882 2.7e-75 286.2 282 61.0
BcaB04g21311 Brassica carinata HOM05D004163 ORTHO05D004882 3.5e-75 285.8 286 55.9
BNapus_Darmor_BZH_scaffold_109p00240 Brassica napus HOM05D001545 ORTHO05D001600 3.5e-75 285.8 280 55.7
Sp3g06030 Schrenkiella parvula HOM05D004163 ORTHO05D004882 3.5e-75 285.8 283 56.5
A05p41110 Brassica napus HOM05D004163 ORTHO05D004882 1.7e-74 283.5 272 57.0
BolC1t05569H Brassica oleracea HOM05D001545 ORTHO05D001600 2.3e-74 283.1 280 55.4
BcaC09g47939 Brassica carinata HOM05D004163 ORTHO05D004882 3.9e-74 282.3 279 55.6
Duzib138G0078 Durio zibethinus HOM05D004163 ORTHO05D004882 6.6e-74 281.6 258 62.0
HPP92_008969 Vanilla planifolia HOM05D004163 ORTHO05D004882 1.6e-72 276.9 280 56.4
CARHR081680 Cardamine hirsuta HOM05D004163 ORTHO05D004882 2.8e-72 276.2 279 56.3
Os02g0814000 Oryza sativa ssp. japonica HOM05D004163 ORTHO05D004882 6.2e-72 275.0 282 57.8
BraA01t04398Z Brassica rapa HOM05D004163 ORTHO05D004882 1.5e-70 270.4 277 54.2
Eucgr.K02178 Eucalyptus grandis HOM05D004163 ORTHO05D004882 1.5e-70 270.4 246 63.0
TAR362G1211 Trochodendron aralioides HOM05D004163 ORTHO05D004882 2.6e-70 269.6 264 59.5
ECA236G3105 Erigeron canadensis HOM05D004163 ORTHO05D004882 3.2e-68 262.7 279 53.0
BcaB04g21309 Brassica carinata HOM05D004163 ORTHO05D004882 4.2e-68 262.3 286 53.1
HanXRQChr10g0287331 Helianthus annuus HOM05D004163 ORTHO05D004882 1.1e-65 254.2 275 52.4
Lsat_1_v5_gn_5_180180 Lactuca sativa HOM05D004163 ORTHO05D004882 1.1e-65 254.2 290 53.4
Os10g0472400 Oryza sativa ssp. japonica HOM05D004163 ORTHO05D004882 1.5e-65 253.8 282 52.5
CsaV3_3G029920 Cucumis sativus L. HOM05D004163 ORTHO05D004882 5.6e-65 251.9 295 52.2
AagrBONN_evm.TU.Sc2ySwM_117.3750 Anthoceros agrestis HOM05D004163 ORTHO05D004882 1.3e-64 250.8 283 52.7
HanXRQChr04g0110741 Helianthus annuus HOM05D004163 ORTHO05D004882 4.8e-64 248.8 278 52.2
Zm00001eb221910 Zea mays HOM05D004163 ORTHO05D004882 5.8e-62 241.9 296 51.7
Lsat_1_v5_gn_9_12141 Lactuca sativa HOM05D004163 ORTHO05D004882 9.9e-62 241.1 243 58.4
Mapoly0051s0047 Marchantia polymorpha HOM05D004163 ORTHO05D004882 8.4e-61 238.0 289 49.8
SMO146G0295 Selaginella moellendorffii HOM05D004163 ORTHO05D004882 3.5e-59 232.6 273 51.6
MD05G1176100 Malus domestica HOM05D004163 ORTHO05D004882 8.7e-58 228.0 160 71.2
Pp3c14_10250 Physcomitrium patens HOM05D004163 ORTHO05D004882 1.6e-56 223.8 305 48.2
MELO3C026664.2 Cucumis melo HOM05D004163 ORTHO05D004882 1.7e-53 213.8 259 49.8
MBI15_g26747_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 8.4e-53 211.5 246 53.7
Cpa.g.sc997.5 Carica papaya HOM05D004163 ORTHO05D004882 1.9e-52 210.3 298 44.6
ClCG07G001940 Citrullus lanatus HOM05D004163 ORTHO05D004882 1.9e-49 200.3 260 47.7
MBI16_g22910_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 5.7e-49 198.7 264 48.9
CBR_g567 Chara braunii HOM05D004163 ORTHO05D004882 1.8e-47 193.7 356 38.5
EL10Ac7g17826 Beta vulgaris HOM05D004163 ORTHO05D004882 2.4e-47 193.4 221 53.8
Lsat_1_v5_gn_8_90020 Lactuca sativa HOM05D004163 ORTHO05D004882 1.2e-46 191.0 245 47.3
MBI18_g31614_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 1.1e-44 184.5 206 54.4
MELO3C021008.2 Cucumis melo HOM05D004163 ORTHO05D004882 5.5e-44 182.2 216 52.8
Sc24g0003580 Simmondsia chinensis HOM05D004163 ORTHO05D004882 2.1e-43 180.3 196 56.6
MBI05_g47467_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 2.0e-41 173.7 234 48.3
PRCOL_00000114 Prasinoderma coloniale HOM05D004163 ORTHO05D004882 3.1e-39 166.4 153 54.2
CDE01G0537 Ceratophyllum demersum HOM05D004163 ORTHO05D004882 9.1e-39 164.9 262 42.0
MBI05_g08208_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 9.1e-39 164.9 243 45.7
Pp3c11_1330 Physcomitrium patens HOM05D004163 ORTHO05D004882 1.5e-38 164.1 184 47.8
MBI05_g47552_MAGBIO Magnolia biondii HOM05D004163 ORTHO05D004882 2.5e-36 156.8 247 43.3
MCO11G711 Micromonas commoda HOM05D004163 ORTHO05D004882 2.1e-35 153.7 132 53.8
C07p12700 Brassica napus HOM05D004163 ORTHO05D004882 3.1e-31 139.8 177 48.6
BcaC06g35635 Brassica carinata HOM05D004163 ORTHO05D004882 3.5e-30 136.3 227 41.4
FvH4_2g19170 Fragaria vesca HOM05D004163 ORTHO05D004882 8.5e-29 131.7 221 41.2
Cre12.g555850 Chlamydomonas reinhardtii HOM05D004163 ORTHO05D004882 1.9e-28 130.6 149 43.0
SHI28736 Sapria himalayana HOM05D004163 ORTHO05D004882 1.2e-27 127.9 114 57.9
C07p01970 Brassica napus HOM05D004163 ORTHO05D004882 2.7e-27 126.7 177 45.8
Haze_24789 Corylus avellana HOM05D004163 ORTHO05D004882 6.1e-27 125.6 154 53.9
Os02g0788133 Oryza sativa ssp. japonica HOM05D004163 ORTHO05D004882 1.0e-21 108.2 67 74.6
SMO173G0033 Selaginella moellendorffii HOM05D004163 ORTHO05D004882 6.5e-21 105.5 92 55.4
C07p01630 Brassica napus HOM05D004163 ORTHO05D004882 4.2e-20 102.8 190 43.2
Peaxi162Scf00517g00519 Petunia axillaris HOM05D004163 ORTHO05D004882 2.6e-17 93.6 156 46.2
Cre16.g662450 Chlamydomonas reinhardtii HOM05D004163 ORTHO05D004882 1.4e-15 87.8 155 31.0
BcaC06g36633 Brassica carinata HOM05D004163 ORTHO05D004882 4.1e-15 86.3 144 45.1
Peaxi162Scf00107g01626 Petunia axillaris HOM05D004163 ORTHO05D004882 4.1e-15 86.3 138 45.7
Hma1.2p1_0812F.1_g222380 Hydrangea macrophylla HOM05D004163 ORTHO05D004882 1.2e-14 84.7 133 47.4
C07p01620 Brassica napus HOM05D004163 ORTHO05D004882 2.2e-13 80.5 48 66.7
BolC7t40606H Brassica oleracea HOM05D004163 ORTHO05D004882 5.5e-12 75.9 134 42.5
Lsat_1_v5_gn_9_120120 Lactuca sativa HOM05D004163 ORTHO05D004882 7.2e-12 75.5 58 65.5
Cfa025778 Carpinus fangiana HOM05D004163 ORTHO05D004882 1.5e-09 67.8 130 35.4
MSTRG.18388 Avicennia marina HOM05D004163 ORTHO05D004882 2.6e-09 67.0 36 83.3
SHI28738 Sapria himalayana HOM05D004163 ORTHO05D004882 5.4e-07 59.3 164 36.0
Lalb_Chr09g0329921 Lupinus albus HOM05D000481 ORTHO05D000471 9.1e-07 58.5 135 31.9
Lsat_1_v5_gn_9_120100 Lactuca sativa HOM05D004163 ORTHO05D004882 2.0e-06 57.4 39 66.7
VMungo0251G2492 Vigna mungo HOM05D000481 ORTHO05D000471 2.7e-06 57.0 133 32.3
Gohir.D13G188400 Gossypium hirsutum HOM05D000481 ORTHO05D000471 3.5e-06 56.6 118 34.7
Lalb_Chr05g0221061 Lupinus albus HOM05D000481 ORTHO05D000471 3.5e-06 56.6 169 29.6
Peaxi162Scf00444g00120 Petunia axillaris HOM05D000481 ORTHO05D003804 4.5e-06 56.2 134 29.9
Migut.E01829 Erythranthe guttata HOM05D000481 ORTHO05D000471 5.9e-06 55.8 129 34.1
Medtr4g100500 Medicago truncatula HOM05D000481 ORTHO05D000471 5.9e-06 55.8 138 31.2
Lj4g0020875 Lotus japonicus HOM05D000481 ORTHO05D000471 7.7e-06 55.5 176 27.8
Medtr5g013040 Medicago truncatula HOM05D000481 ORTHO05D000471 7.7e-06 55.5 127 33.9
Psat4g073600 Pisum sativum HOM05D000481 ORTHO05D000471 7.7e-06 55.5 128 33.6


User provided reference genes

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