Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045256 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 2.4e-31 138.3 73 100.0
vmacro08831 Vaccinium macrocarpon HOM05D006439 ORTHO05D008152 4.6e-14 80.9 50 80.0
Actinidia31281 Actinidia chinensis HOM05D006439 ORTHO05D008152 1.3e-13 79.3 53 73.6
Dinv21235 Davidia involucrata HOM05D000103 ORTHO05D008152 2.9e-13 78.2 53 71.7
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 9.5e-12 73.2 53 67.9
Peaxi162Scf00146g00718 Petunia axillaris HOM05D006439 ORTHO05D008152 8.0e-11 70.1 53 62.3
arahy.Tifrunner.gnm1.ann1.YQ8CLY Arachis hypogaea HOM05D006439 ORTHO05D008152 1.4e-10 69.3 69 52.2
Sopen10g035010 Solanum pennellii HOM05D006439 ORTHO05D008152 2.3e-10 68.6 53 60.4
CAN.G1099.9 Capsicum annuum HOM05D006439 ORTHO05D008152 4.0e-10 67.8 53 60.4
Glyma.03G192900 Glycine max HOM05D006439 ORTHO05D008152 4.0e-10 67.8 69 50.7
VMungo1383G0775 Vigna mungo HOM05D006439 ORTHO05D008152 5.2e-10 67.4 69 50.7
arahy.Tifrunner.gnm1.ann1.JQB9X3 Arachis hypogaea HOM05D006439 ORTHO05D008152 6.8e-10 67.0 68 51.5
Lj3A1001T30 Lonicera japonica HOM05D006439 ORTHO05D008152 6.8e-10 67.0 48 66.7
Cfa016567 Carpinus fangiana HOM05D006439 ORTHO05D008152 1.2e-09 66.2 53 62.3
Haze_19565 Corylus avellana HOM05D006439 ORTHO05D008152 1.2e-09 66.2 53 62.3
Solyc10g085600.2 Solanum lycopersicum HOM05D006439 ORTHO05D008152 1.2e-09 66.2 53 58.5
Psat3g034720 Pisum sativum HOM05D006439 ORTHO05D008152 1.5e-09 65.9 69 50.7
TPR.G19544 Trifolium pratense HOM05D006439 ORTHO05D008152 1.5e-09 65.9 69 53.6
Phvul.001G188000 Phaseolus vulgaris HOM05D006439 ORTHO05D008152 2.0e-09 65.5 53 60.4
Medtr7g104170 Medicago truncatula HOM05D006439 ORTHO05D008152 3.4e-09 64.7 50 62.0
Ca_08981_v3 Cicer arietinum L. HOM05D006439 ORTHO05D008152 5.8e-09 63.9 69 50.7
QL07p039851 Quercus lobata HOM05D006439 ORTHO05D008152 5.8e-09 63.9 53 58.5
SalBow5G0766 Salvia bowleyana HOM05D006439 ORTHO05D008152 5.8e-09 63.9 50 60.0
TAR623G1631 Trochodendron aralioides HOM05D006439 ORTHO05D008152 5.8e-09 63.9 53 60.4
Lsat_1_v5_gn_6_69500 Lactuca sativa HOM05D006439 ORTHO05D008152 7.5e-09 63.5 68 48.5
Cpa.g.sc5.59 Carica papaya HOM05D006439 ORTHO05D008152 9.8e-09 63.2 49 65.3
Lalb_Chr01g0018261 Lupinus albus HOM05D006439 ORTHO05D008152 9.8e-09 63.2 53 58.5
Oeu034357.1 Olea europaea HOM05D006439 ORTHO05D008152 1.3e-08 62.8 53 56.6
Gohir.D11G340900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 1.7e-08 62.4 48 64.6
Gorai.007G371000 Gossypium raimondii HOM05D006439 ORTHO05D008152 1.7e-08 62.4 48 64.6
Nitab4.5_0000381g0240 Nicotiana tabacum HOM05D006439 ORTHO05D008152 1.7e-08 62.4 53 56.6
HanXRQChr09g0247281 Helianthus annuus HOM05D006439 ORTHO05D008152 2.2e-08 62.0 67 49.3
Prupe.7G115000 Prunus persica HOM05D006439 ORTHO05D008152 2.2e-08 62.0 49 63.3
Duzib093G0471 Durio zibethinus HOM05D006439 ORTHO05D008152 2.9e-08 61.6 48 62.5
Lj1g0012097 Lotus japonicus HOM05D006439 ORTHO05D008152 2.9e-08 61.6 49 59.2
TWI74G0883 Tripterygium wilfordii HOM05D006439 ORTHO05D008152 2.9e-08 61.6 53 58.5
GSVIVG01033817001 Vitis vinifera HOM05D006439 ORTHO05D008152 2.9e-08 61.6 53 56.6
Thecc.05G084500 Theobroma cacao HOM05D006439 ORTHO05D008152 3.7e-08 61.2 48 60.4
Atru.chr8.1601 Acer truncatum HOM05D006439 ORTHO05D008152 4.9e-08 60.8 48 64.6
DCAR_009146 Daucus carota HOM05D006439 ORTHO05D008152 1.4e-07 59.3 50 60.0
Gohir.A11G321900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 1.9e-07 58.9 48 62.5
Aa31LG5G21550 Aethionema arabicum HOM05D006439 ORTHO05D008152 3.2e-07 58.2 53 58.5
EL10Ac7g16960 Beta vulgaris HOM05D006439 ORTHO05D008152 3.2e-07 58.2 53 54.7
CARHR130670 Cardamine hirsuta HOM05D006439 ORTHO05D008152 3.2e-07 58.2 51 52.9
Cc06_g05440 Coffea canephora HOM05D006439 ORTHO05D008152 3.2e-07 58.2 50 56.0
Manes.08G022900 Manihot esculenta HOM05D006439 ORTHO05D008152 3.2e-07 58.2 50 58.0
ECA233G3232 Erigeron canadensis HOM05D006439 ORTHO05D008152 4.1e-07 57.8 53 56.6
FvH4_6g18170 Fragaria vesca HOM05D006439 ORTHO05D008152 5.4e-07 57.4 53 54.7
FAN14G3294 Fragaria x ananassa HOM05D006439 ORTHO05D008152 5.4e-07 57.4 53 54.7
CiPaw.09G010200 Carya illinoinensis HOM05D006439 ORTHO05D008152 7.0e-07 57.0 53 54.7
BraA04t18280Z Brassica rapa HOM05D006439 ORTHO05D008152 1.2e-06 56.2 51 54.9
FAN02G3052 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.2e-06 56.2 53 52.8
Ah.15g091040 Amaranthus hybridus HOM05D006439 ORTHO05D008152 1.6e-06 55.8 50 52.0
Ciclev10011131m.g Citrus clementina HOM05D006439 ORTHO05D008152 1.6e-06 55.8 51 58.8
MD12G1021400 Malus domestica HOM05D006439 ORTHO05D008152 1.6e-06 55.8 49 59.2
SGA_v2.0_scaffold184G39949 Striga asiatica HOM05D006439 ORTHO05D008152 1.6e-06 55.8 53 58.5
BcaB06g28933 Brassica carinata HOM05D006439 ORTHO05D008152 2.0e-06 55.5 51 52.9
AUR62028585 Chenopodium quinoa HOM05D006439 ORTHO05D008152 2.0e-06 55.5 53 54.7
Sp4g18660 Schrenkiella parvula HOM05D006439 ORTHO05D008152 2.7e-06 55.1 51 51.0
RcHm_v2.0_Chr3g0472491 Rosa chinensis HOM05D006439 ORTHO05D008152 4.6e-06 54.3 49 57.1
A04p27880 Brassica napus HOM05D006439 ORTHO05D008152 6.0e-06 53.9 51 52.9
Carub.0004s1817 Capsella rubella HOM05D006439 ORTHO05D008152 6.0e-06 53.9 51 51.0
Thhalv10017885m.g Eutrema salsugineum HOM05D006439 ORTHO05D008152 6.0e-06 53.9 51 51.0
THA.LOC104823488 Tarenaya hassleriana HOM05D006439 ORTHO05D008152 6.0e-06 53.9 53 49.1
AL4G32530 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 7.8e-06 53.5 51 52.9
AT2G36370 Arabidopsis thaliana HOM05D006439 ORTHO05D008152 7.8e-06 53.5 51 51.0
Sc07g0005420 Simmondsia chinensis HOM05D006439 ORTHO05D008152 7.8e-06 53.5 50 52.0


User provided reference genes

Program Settings