Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045223 Camellia sinensis var. sinensis HOM05D004467 ORTHO05D004918 2.1e-211 738.8 374 100.0
CSS0050424 Camellia sinensis var. sinensis HOM05D004467 ORTHO05D004918 2.3e-202 708.8 375 96.5
Rhsim05G0042300 Rhododendron simsii HOM05D004467 ORTHO05D004918 5.0e-133 478.4 341 73.3
Actinidia09440 Actinidia chinensis HOM05D004467 ORTHO05D004918 1.2e-131 473.8 355 70.7
Actinidia20407 Actinidia chinensis HOM05D004467 ORTHO05D004918 5.7e-129 464.9 342 72.8
vmacro10868 Vaccinium macrocarpon HOM05D004467 ORTHO05D004918 3.3e-124 449.1 341 69.5
CSS0030226 Camellia sinensis var. sinensis HOM05D004467 ORTHO05D004918 2.4e-111 406.4 350 65.4
Atru.chr7.1422 Acer truncatum HOM05D004467 ORTHO05D004918 9.5e-108 394.4 352 61.6
Cfa003215 Carpinus fangiana HOM05D004467 ORTHO05D004918 4.0e-106 389.0 339 62.2
MD15G1193100 Malus domestica HOM05D004467 ORTHO05D004918 2.9e-104 382.9 339 61.4
Haze_25793 Corylus avellana HOM05D004467 ORTHO05D004918 1.4e-103 380.6 339 61.4
Lj7C659T11 Lonicera japonica HOM05D004467 ORTHO05D004918 3.0e-101 372.9 355 61.4
QL02p042959 Quercus lobata HOM05D004467 ORTHO05D004918 6.6e-101 371.7 374 58.0
Dinv41649 Davidia involucrata HOM05D004467 ORTHO05D004918 1.1e-100 370.9 354 59.0
Prupe.7G224200 Prunus persica HOM05D004467 ORTHO05D004918 1.5e-100 370.5 339 60.5
COL.COLO4_34790 Corchorus olitorius HOM05D004467 ORTHO05D004918 3.3e-100 369.4 350 57.1
CiPaw.03G227200 Carya illinoinensis HOM05D004467 ORTHO05D004918 4.3e-100 369.0 368 56.8
QL02p042682 Quercus lobata HOM05D004467 ORTHO05D004918 5.6e-100 368.6 338 60.9
Potri.018G085100 Populus trichocarpa HOM05D004467 ORTHO05D004918 1.1e-98 364.4 351 58.4
FAN19G0416 Fragaria x ananassa HOM05D004467 ORTHO05D004918 1.5e-97 360.5 338 59.5
Ciclev10008049m.g Citrus clementina HOM05D004467 ORTHO05D004918 2.6e-97 359.8 357 56.3
Manes.03G024900 Manihot esculenta HOM05D004467 ORTHO05D004918 2.6e-97 359.8 350 58.6
FvH4_1g05760 Fragaria vesca HOM05D004467 ORTHO05D004918 3.4e-97 359.4 338 59.5
RcHm_v2.0_Chr2g0091401 Rosa chinensis HOM05D004467 ORTHO05D004918 9.9e-97 357.8 338 60.1
FAN26G1468 Fragaria x ananassa HOM05D004467 ORTHO05D004918 1.3e-96 357.5 338 59.5
FAN23G1822 Fragaria x ananassa HOM05D004467 ORTHO05D004918 1.7e-96 357.1 338 59.2
Hma1.2p1_0945F.1_g240200 Hydrangea macrophylla HOM05D004467 ORTHO05D004918 1.7e-96 357.1 339 59.6
FAN28G1510 Fragaria x ananassa HOM05D004467 ORTHO05D004918 2.2e-96 356.7 338 58.9
FAN26G2528 Fragaria x ananassa HOM05D004467 ORTHO05D004918 2.9e-96 356.3 338 59.2
Gorai.009G027000 Gossypium raimondii HOM05D004467 ORTHO05D004918 3.8e-96 355.9 350 54.9
Thecc.09G104300 Theobroma cacao HOM05D004467 ORTHO05D004918 4.9e-96 355.5 353 55.5
Duzib168G1064 Durio zibethinus HOM05D004467 ORTHO05D004918 8.4e-96 354.8 350 55.7
Gohir.D05G026900 Gossypium hirsutum HOM05D004467 ORTHO05D004918 4.2e-95 352.4 350 54.9
Sabra18G0073600 Salix brachista HOM05D004467 ORTHO05D004918 9.2e-95 351.3 351 56.7
Gohir.A05G025400 Gossypium hirsutum HOM05D004467 ORTHO05D004918 2.1e-94 350.1 350 54.3
Potri.006G162900 Populus trichocarpa HOM05D004467 ORTHO05D004918 6.0e-94 348.6 352 57.1
Manes.16G111600 Manihot esculenta HOM05D004467 ORTHO05D004918 1.8e-90 337.0 350 57.4
Duzib187G1021 Durio zibethinus HOM05D004467 ORTHO05D004918 9.0e-90 334.7 350 54.0
MD02G1058800 Malus domestica HOM05D004467 ORTHO05D004918 2.0e-89 333.6 314 58.0
PGSC0003DMG401027437 Solanum tuberosum HOM05D004467 ORTHO05D004918 2.0e-89 333.6 350 56.0
Sopen05g015080 Solanum pennellii HOM05D004467 ORTHO05D004918 5.8e-89 332.0 354 54.8
Solyc05g018320.3 Solanum lycopersicum HOM05D004467 ORTHO05D004918 4.9e-88 328.9 354 54.2
Nitab4.5_0004727g0020 Nicotiana tabacum HOM05D004467 ORTHO05D004918 1.1e-87 327.8 350 54.6
CANSAT56G0937 Cannabis sativa HOM05D004467 ORTHO05D004918 1.2e-86 324.3 339 53.1
Oeu053753.2 Olea europaea HOM05D004467 ORTHO05D004918 3.5e-86 322.8 358 53.4
Peaxi162Scf00539g00210 Petunia axillaris HOM05D004467 ORTHO05D004918 1.7e-85 320.5 354 52.8
Nitab4.5_0000012g0160 Nicotiana tabacum HOM05D004467 ORTHO05D004918 2.5e-84 316.6 350 53.4
TAR626G1578 Trochodendron aralioides HOM05D004467 ORTHO05D004918 1.2e-81 307.8 382 49.0
TAR636G0217 Trochodendron aralioides HOM05D004467 ORTHO05D004918 2.0e-81 307.0 382 49.0
CAN.G587.15 Capsicum annuum HOM05D004467 ORTHO05D004918 2.9e-80 303.1 354 51.4
MSTRG.10616 Avicennia marina HOM05D004467 ORTHO05D004918 1.2e-78 297.7 359 50.1
SalBow5G0997 Salvia bowleyana HOM05D004467 ORTHO05D004918 2.7e-78 296.6 352 50.0
ECA240G1275 Erigeron canadensis HOM05D004467 ORTHO05D004918 4.6e-78 295.8 358 50.0
Glyma.01G146400 Glycine max HOM05D004467 ORTHO05D004918 6.0e-78 295.4 339 52.5
Dinv36673 Davidia involucrata HOM05D004467 ORTHO05D004918 7.9e-78 295.0 249 64.3
Gohir.A06G065600 Gossypium hirsutum HOM05D004467 ORTHO05D004918 1.1e-76 291.2 353 49.0
Gorai.010G074900 Gossypium raimondii HOM05D004467 ORTHO05D004918 2.1e-75 287.0 353 49.6
Cpa.g.sc40.31 Carica papaya HOM05D004467 ORTHO05D004918 3.7e-75 286.2 349 50.7
Lj2g0027738 Lotus japonicus HOM05D004467 ORTHO05D004918 4.8e-75 285.8 357 49.6
TWI32G0931 Tripterygium wilfordii HOM05D004467 ORTHO05D004918 3.1e-74 283.1 351 49.3
TAR383G0828 Trochodendron aralioides HOM05D004467 ORTHO05D004918 4.0e-74 282.7 382 47.4
DCAR_024697 Daucus carota HOM05D004467 ORTHO05D004918 6.9e-74 282.0 350 48.3
Cc06_g10170 Coffea canephora HOM05D004467 ORTHO05D004918 2.6e-73 280.0 356 50.0
TWI63G0792 Tripterygium wilfordii HOM05D004467 ORTHO05D004918 2.6e-73 280.0 351 49.6
Phvul.004G169100 Phaseolus vulgaris HOM05D004467 ORTHO05D004918 4.9e-72 275.8 338 49.7
Ca_25554_v3 Cicer arietinum L. HOM05D004467 ORTHO05D004918 1.1e-71 274.6 361 47.9
VMungo0464G1817 Vigna mungo HOM05D004467 ORTHO05D004918 9.3e-71 271.6 334 49.7
Nn3g18160 Nelumbo nucifera HOM05D004467 ORTHO05D004918 2.1e-70 270.4 383 44.4
arahy.Tifrunner.gnm1.ann1.4I8WV5 Arachis hypogaea HOM05D004467 ORTHO05D004918 6.0e-70 268.9 341 47.8
Psat1g045360 Pisum sativum HOM05D004467 ORTHO05D004918 3.9e-69 266.2 339 48.1
Medtr6g087140 Medicago truncatula HOM05D004467 ORTHO05D004918 5.1e-69 265.8 338 47.9
Glyma.09G193900 Glycine max HOM05D004467 ORTHO05D004918 1.1e-68 264.6 340 49.4
arahy.Tifrunner.gnm1.ann1.6QT9XW Arachis hypogaea HOM05D004467 ORTHO05D004918 3.3e-68 263.1 343 47.2
Lalb_Chr05g0223111 Lupinus albus HOM05D004467 ORTHO05D004918 4.0e-66 256.1 357 45.1
Eucgr.C03788 Eucalyptus grandis HOM05D004467 ORTHO05D004918 7.6e-65 251.9 338 45.3
Lalb_Chr16g0388041 Lupinus albus HOM05D004467 ORTHO05D004918 2.5e-63 246.9 338 45.0
PGR102G2224 Punica granatum HOM05D004467 ORTHO05D004918 2.5e-63 246.9 346 46.5
ClCG11G002290 Citrullus lanatus HOM05D004467 ORTHO05D004918 6.7e-61 238.8 332 45.2
Lj8C70G12 Lonicera japonica HOM05D004467 ORTHO05D004918 1.5e-60 237.7 356 47.5
CsaV3_2G002070 Cucumis sativus L. HOM05D004467 ORTHO05D004918 2.2e-59 233.8 332 44.9
TPR.G28824 Trifolium pratense HOM05D004467 ORTHO05D004918 2.8e-59 233.4 339 45.4
Gohir.D06G064200 Gossypium hirsutum HOM05D004467 ORTHO05D004918 3.1e-58 229.9 353 42.5
MELO3C004575.2 Cucumis melo HOM05D004467 ORTHO05D004918 5.3e-58 229.2 332 44.3
Lsat_1_v5_gn_7_41160 Lactuca sativa HOM05D004467 ORTHO05D004918 3.4e-57 226.5 354 43.5
Hund26245 Selenicereus undatus HOM05D004467 ORTHO05D004918 1.4e-55 221.1 338 40.2
Sed0000460 Sechium edule HOM05D004467 ORTHO05D004918 3.2e-55 219.9 327 44.3
EL10Ac8g18417 Beta vulgaris HOM05D004467 ORTHO05D004918 3.0e-53 213.4 341 41.1
AUR62021444 Chenopodium quinoa HOM05D004467 ORTHO05D004918 1.3e-51 208.0 333 41.7
Aqoxy7G01500 Aquilegia oxysepala HOM05D004467 ORTHO05D004918 5.9e-49 199.1 379 37.7
AUR62010932 Chenopodium quinoa HOM05D004467 ORTHO05D004918 5.9e-49 199.1 333 41.1
Migut.K00515 Erythranthe guttata HOM05D004467 ORTHO05D004918 1.0e-48 198.4 352 39.8
SGA_v2.0_scaffold5G02535 Striga asiatica HOM05D004467 ORTHO05D004918 1.3e-48 198.0 359 40.7
CsaV3_6G021320 Cucumis sativus L. HOM05D004467 ORTHO05D004918 3.8e-48 196.4 336 40.2
MELO3C024641.2 Cucumis melo HOM05D004467 ORTHO05D004918 3.9e-45 186.4 359 37.9
HanXRQChr03g0061251 Helianthus annuus HOM05D004467 ORTHO05D004918 5.0e-40 169.5 311 38.9
Hund09233 Selenicereus undatus HOM05D004467 ORTHO05D004918 6.5e-40 169.1 339 36.6
PSO210G6045 Papaver somniferum HOM05D004467 ORTHO05D004918 1.6e-38 164.5 378 37.0
THA.LOC104820046 Tarenaya hassleriana HOM05D004467 ORTHO05D004918 3.6e-38 163.3 338 40.5
Sed0017359 Sechium edule HOM05D004467 ORTHO05D004918 2.3e-37 160.6 384 36.2
PSO210G7819 Papaver somniferum HOM05D004467 ORTHO05D004918 3.9e-37 159.8 378 36.5
AT4G28910 Arabidopsis thaliana HOM05D004467 ORTHO05D004918 5.2e-37 159.5 350 39.7
HanXRQChr09g0239001 Helianthus annuus HOM05D004467 ORTHO05D004918 6.7e-37 159.1 314 38.9
AL7G23580 Arabidopsis lyrata HOM05D004467 ORTHO05D004918 2.0e-36 157.5 356 39.0
CARHR236680 Cardamine hirsuta HOM05D004467 ORTHO05D004918 2.0e-36 157.5 329 40.4
Thhalv10025262m.g Eutrema salsugineum HOM05D004467 ORTHO05D004918 5.7e-36 156.0 347 41.2
Carub.0007s1175 Capsella rubella HOM05D004467 ORTHO05D004918 7.4e-36 155.6 332 40.4
Sp7g26880 Schrenkiella parvula HOM05D004467 ORTHO05D004918 6.3e-35 152.5 329 40.4
Sc08g0007800 Simmondsia chinensis HOM05D004467 ORTHO05D004918 7.2e-31 139.0 339 34.8
BraA01t00851Z Brassica rapa HOM05D004467 ORTHO05D004918 2.1e-30 137.5 357 38.9
unitig_22.g6724 Utricularia gibba HOM05D004467 ORTHO05D004918 2.7e-30 137.1 334 35.3
TAR636G1964 Trochodendron aralioides HOM05D004467 ORTHO05D004918 4.0e-29 133.3 287 39.0
BolC1t01020H Brassica oleracea HOM05D004467 ORTHO05D004918 2.6e-28 130.6 348 38.2
BcaC09g51670 Brassica carinata HOM05D004467 ORTHO05D004918 4.4e-28 129.8 347 38.3
A01p09030 Brassica napus HOM05D004467 ORTHO05D004918 7.5e-28 129.0 369 38.2
C01p10580 Brassica napus HOM05D004467 ORTHO05D004918 9.7e-28 128.6 347 38.0
BcaNung01350 Brassica carinata HOM05D004467 ORTHO05D004918 3.7e-27 126.7 335 39.4
CsaV3_1G019490 Cucumis sativus L. HOM05D004467 ORTHO05D004918 1.8e-26 124.4 218 38.5
MBI01_g39827_MAGBIO Magnolia biondii HOM05D004467 ORTHO05D004918 3.1e-26 123.6 379 34.3
ATR0705G047 Amborella trichopoda HOM05D004467 ORTHO05D004918 2.9e-24 117.1 356 31.5
BcaNung06399 Brassica carinata HOM05D004467 ORTHO05D004918 2.3e-21 107.5 309 37.5
HPP92_027881 Vanilla planifolia HOM05D004467 ORTHO05D004918 6.3e-19 99.4 396 29.5
CDE05G2925 Ceratophyllum demersum HOM05D004467 ORTHO05D004918 1.8e-18 97.8 354 30.8
Aa31LG2G21270 Aethionema arabicum HOM05D004467 ORTHO05D004918 2.4e-18 97.4 327 34.9
CDE05G0303 Ceratophyllum demersum HOM05D004467 ORTHO05D004918 2.4e-18 97.4 346 29.2
THA.LOC104814564 Tarenaya hassleriana HOM05D004467 ORTHO05D004918 1.6e-17 94.7 374 31.6
A03p58480 Brassica napus HOM05D004467 ORTHO05D004918 3.5e-17 93.6 319 32.6
BraA03t14909Z Brassica rapa HOM05D004467 ORTHO05D004918 4.5e-17 93.2 319 32.6
MBI01_g24452_MAGBIO Magnolia biondii HOM05D004467 ORTHO05D004918 1.3e-16 91.7 392 30.1
BcaNung02901 Brassica carinata HOM05D004467 ORTHO05D004918 5.0e-16 89.7 320 32.2
C07p56500 Brassica napus HOM05D004467 ORTHO05D004918 5.0e-16 89.7 320 32.2
BolC7t46129H Brassica oleracea HOM05D004467 ORTHO05D004918 1.5e-15 88.2 321 32.4
Os05g0558800 Oryza sativa ssp. japonica HOM05D004467 ORTHO05D004918 1.3e-11 75.1 376 26.9
Zm00001eb343360 Zea mays HOM05D004467 ORTHO05D004918 3.7e-11 73.6 352 28.1
Aa31LG8G16970 Aethionema arabicum HOM05D004467 ORTHO05D004918 5.4e-10 69.7 179 36.3
SEGI_06055 Sequoiadendron giganteum HOM05D025566 ORTHO05D004918 7.0e-10 69.3 373 29.0
HPP92_006324 Vanilla planifolia HOM05D004467 ORTHO05D004918 3.3e-07 60.5 195 36.4
CsaV3_1G019480 Cucumis sativus L. HOM05D004467 ORTHO05D004918 7.3e-07 59.3 66 50.0
GSVIVG01015335001 Vitis vinifera HOM05D004467 ORTHO05D004918 2.8e-06 57.4 47 57.4
BcaNung01354 Brassica carinata HOM05D004467 ORTHO05D004918 8.0e-06 55.8 184 34.2


User provided reference genes

Program Settings