Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045207 Camellia sinensis var. sinensis HOM05D024541 ORTHO05D024705 1.1e-192 676.4 321 100.0
CSS0040705 Camellia sinensis var. sinensis HOM05D024541 ORTHO05D024705 2.0e-183 645.6 318 96.2
CSS0020947 Camellia sinensis var. sinensis HOM05D024541 ORTHO05D024705 5.6e-141 504.6 244 96.7
CSS0035836 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 6.2e-31 139.0 74 90.5
CSS0025900 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 5.2e-30 136.0 74 87.8
CSS0032349 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 2.2e-28 130.6 74 85.1
CSS0002149 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 1.1e-27 128.3 74 85.1
Rhsim08G0168200 Rhododendron simsii HOM05D024541 ORTHO05D024705 2.0e-21 107.5 100 49.0
Hma1.2p1_0359F.1_g135000 Hydrangea macrophylla HOM05D000455 ORTHO05D000434 7.6e-21 105.5 217 31.8
Rhsim11G0015600 Rhododendron simsii HOM05D011344 ORTHO05D016379 6.0e-18 95.9 132 35.6
Dinv01242 Davidia involucrata HOM05D010363 ORTHO05D008693 2.3e-17 94.0 220 25.5
vmacro09225 Vaccinium macrocarpon HOM05D007651 ORTHO05D000898 7.3e-16 89.0 148 34.5
SGA_v2.0_scaffold142G35697 Striga asiatica HOM05D017631 ORTHO05D009908 1.3e-15 88.2 250 26.4
Rhsim02G0102000 Rhododendron simsii HOM05D002347 ORTHO05D000898 2.8e-15 87.0 123 37.4
SGA_v2.0_scaffold81G26003 Striga asiatica HOM05D017631 ORTHO05D009908 4.8e-15 86.3 231 26.4
SGA_v2.0_scaffold74G24629 Striga asiatica HOM05D017631 ORTHO05D009908 8.1e-15 85.5 222 27.0
Rhsim02G0127200 Rhododendron simsii HOM05D011344 ORTHO05D016379 1.1e-14 85.1 97 37.1
SGA_v2.0_scaffold540G52806 Striga asiatica HOM05D017631 ORTHO05D009908 1.4e-14 84.7 231 26.0
CSS0025382 Camellia sinensis var. sinensis HOM05D012118 ORTHO05D009908 1.8e-14 84.3 201 27.9
RhsimUnG0133500 Rhododendron simsii HOM05D024541 ORTHO05D024705 2.4e-14 84.0 94 42.6
Rhsim01G0207900 Rhododendron simsii HOM05D012118 ORTHO05D009908 2.0e-13 80.9 136 29.4
RhsimUnG0074900 Rhododendron simsii HOM05D011344 ORTHO05D016379 1.7e-12 77.8 119 31.9
Rhsim04G0161400 Rhododendron simsii HOM05D012118 ORTHO05D009908 3.8e-12 76.6 163 27.0
Lj2g0027504 Lotus japonicus HOM05D009725 ORTHO05D007788 6.4e-12 75.9 224 25.4
Lj5g0015857 Lotus japonicus HOM05D009725 ORTHO05D007788 2.4e-11 73.9 132 30.3
arahy.Tifrunner.gnm1.ann1.AXL83M Arachis hypogaea HOM05D008645 ORTHO05D007788 5.4e-11 72.8 218 27.1
COL.COLO4_20373 Corchorus olitorius HOM05D007993 ORTHO05D000898 2.1e-10 70.9 137 28.5
FAN09G4807 Fragaria x ananassa HOM05D004096 ORTHO05D029602 1.8e-09 67.8 220 24.5
Rhsim02G0142200 Rhododendron simsii HOM05D007651 ORTHO05D000898 8.7e-09 65.5 66 45.5
Thhalv10020659m.g Eutrema salsugineum HOM05D002639 ORTHO05D003094 5.6e-08 62.8 182 26.9
Phvul.003G106100 Phaseolus vulgaris HOM05D002639 ORTHO05D003094 5.6e-08 62.8 187 23.5
Gohir.D10G170600 Gossypium hirsutum HOM05D002639 ORTHO05D003094 3.7e-07 60.1 207 23.7
AL3G18030 Arabidopsis lyrata HOM05D002639 ORTHO05D003094 4.8e-07 59.7 182 25.8
arahy.Tifrunner.gnm1.ann1.7RK78I Arachis hypogaea HOM05D002639 ORTHO05D003094 4.8e-07 59.7 173 26.0
Gorai.011G190600 Gossypium raimondii HOM05D002639 ORTHO05D003094 4.8e-07 59.7 210 24.8
Thecc.04G055800 Theobroma cacao HOM05D008451 ORTHO05D009908 4.8e-07 59.7 112 28.6
BolC1t05578H Brassica oleracea HOM05D002639 ORTHO05D003094 6.2e-07 59.3 182 25.8
BcaC09g47927 Brassica carinata HOM05D002639 ORTHO05D003094 8.1e-07 58.9 182 25.8
BNapus_Darmor_BZH_scaffold_117p00160 Brassica napus HOM05D002639 ORTHO05D003094 8.1e-07 58.9 182 25.8
AT3G06910 Arabidopsis thaliana HOM05D002639 ORTHO05D003094 1.1e-06 58.5 182 25.3
BraA01t04407Z Brassica rapa HOM05D002639 ORTHO05D003094 1.8e-06 57.8 187 24.1
Carub.0003s0643 Capsella rubella HOM05D002639 ORTHO05D003094 1.8e-06 57.8 177 25.4
VMungo1215G3056 Vigna mungo HOM05D002639 ORTHO05D003094 1.8e-06 57.8 187 22.5


User provided reference genes

Program Settings