Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045184 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.3e-82 309.7 159 100.0
CSS0010224 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 6.5e-82 307.4 159 99.4
CSS0032709 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 7.2e-81 303.9 159 98.1
CSS0047095 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 6.1e-80 300.8 159 97.5
CSS0043236 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 8.0e-80 300.4 159 96.9
CSS0031021 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.4e-79 299.7 159 96.2
CSS0007988 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.8e-79 299.3 159 96.9
CSS0037322 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.6e-78 295.4 159 96.2
CSS0037751 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 8.5e-74 280.4 159 92.5
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 3.7e-37 158.7 87 93.1
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 8.6e-34 147.5 87 83.9
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 1.6e-32 143.3 87 82.8
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 1.6e-32 143.3 87 81.6
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 5.8e-30 134.8 87 77.0
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 1.3e-29 133.7 87 75.9
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 1.3e-29 133.7 87 75.9
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 6.4e-29 131.3 87 74.7
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 1.4e-28 130.2 85 75.3
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 1.4e-28 130.2 85 75.3
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 1.4e-28 130.2 87 77.0
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 3.2e-28 129.0 87 72.4
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 3.2e-28 129.0 87 73.6
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 3.2e-28 129.0 87 73.6
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 3.2e-28 129.0 87 77.0
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 4.1e-28 128.6 87 73.6
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 5.4e-28 128.3 87 75.9
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 5.4e-28 128.3 87 73.6
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 7.1e-28 127.9 85 75.3
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 7.1e-28 127.9 87 72.4
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 1.2e-27 127.1 87 72.4
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 1.2e-27 127.1 87 72.4
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 1.6e-27 126.7 104 69.2
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 2.1e-27 126.3 87 69.0
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 3.5e-27 125.6 87 75.9
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 6.0e-27 124.8 87 70.1
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 7.8e-27 124.4 87 69.0
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 3.0e-26 122.5 87 71.3
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 6.6e-26 121.3 87 72.4
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 1.5e-25 120.2 87 67.8
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 1.5e-25 120.2 87 71.3
CAN.G798.12 Capsicum annuum HOM05D003697 ORTHO05D005452 1.9e-25 119.8 87 71.3
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 1.9e-25 119.8 87 67.8
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 3.3e-25 119.0 88 68.2
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 3.3e-25 119.0 87 69.0
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 9.6e-25 117.5 87 66.7
ClCG05G009570 Citrullus lanatus HOM05D003697 ORTHO05D005452 1.2e-24 117.1 87 65.5
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 1.6e-24 116.7 87 70.1
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 2.8e-24 115.9 87 69.0
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 2.8e-24 115.9 87 69.0
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 6.2e-24 114.8 85 65.9
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 6.2e-24 114.8 87 67.8
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 1.4e-23 113.6 87 65.5
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 3.1e-23 112.5 87 66.7
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 3.1e-23 112.5 87 67.8
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 3.1e-23 112.5 87 67.8
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 3.1e-23 112.5 87 66.7
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 4.0e-23 112.1 87 66.7
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 4.0e-23 112.1 87 66.7
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 4.0e-23 112.1 87 66.7
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 5.2e-23 111.7 87 66.7
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 5.2e-23 111.7 87 67.8
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 6.8e-23 111.3 87 65.5
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 6.8e-23 111.3 87 66.7
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 6.8e-23 111.3 95 61.1
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 1.2e-22 110.5 95 60.0
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 2.0e-22 109.8 87 66.7
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 2.6e-22 109.4 88 67.0
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 3.4e-22 109.0 87 64.4
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 4.4e-22 108.6 89 62.9
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 5.8e-22 108.2 87 64.4
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 7.6e-22 107.8 87 63.2
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 1.3e-21 107.1 87 63.2
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 1.3e-21 107.1 87 64.4
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 1.3e-21 107.1 87 62.1
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 1.3e-21 107.1 87 62.1
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 1.3e-21 107.1 87 60.9
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 1.3e-21 107.1 87 63.2
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 1.7e-21 106.7 96 60.4
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 1.7e-21 106.7 87 63.2
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 1.7e-21 106.7 87 62.1
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 3.8e-21 105.5 87 63.2
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 1.1e-20 104.0 96 59.4
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 2.4e-20 102.8 117 43.6
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 3.2e-20 102.4 85 60.0
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 3.2e-20 102.4 85 60.0
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 3.2e-20 102.4 85 60.0
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 4.2e-20 102.1 85 58.8
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 4.2e-20 102.1 85 58.8
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 4.2e-20 102.1 96 58.3
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 5.4e-20 101.7 85 60.0
Psat1g220520 Pisum sativum HOM05D003697 ORTHO05D005452 5.4e-20 101.7 96 58.3
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 7.1e-20 101.3 85 60.0
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 9.3e-20 100.9 85 58.8
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 1.2e-19 100.5 87 57.5
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 1.2e-19 100.5 84 59.5
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 1.6e-19 100.1 95 55.8
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 2.7e-19 99.4 87 62.1
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 3.5e-19 99.0 110 47.3
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 3.5e-19 99.0 85 57.6
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 4.6e-19 98.6 86 60.5
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 4.6e-19 98.6 87 56.3
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 7.8e-19 97.8 87 58.6
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 1.0e-18 97.4 110 46.4
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 5.1e-18 95.1 85 58.8
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 8.7e-18 94.4 87 58.6
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 1.1e-17 94.0 87 55.2
SHI16668 Sapria himalayana HOM05D003697 ORTHO05D005452 1.1e-17 94.0 78 59.0
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 1.9e-17 93.2 96 55.2
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 5.6e-17 91.7 110 42.7
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 1.8e-15 86.7 93 50.5
Psat4g083840 Pisum sativum HOM05D003697 ORTHO05D014541 2.0e-14 83.2 81 58.0
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 2.0e-14 83.2 88 54.5
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 2.0e-14 83.2 99 46.5
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 3.4e-14 82.4 113 41.6
Cpa.g.sc30.4 Carica papaya HOM05D003697 ORTHO05D005452 3.4e-14 82.4 62 67.7
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 1.1e-12 77.4 80 50.0
TPR.G34678 Trifolium pratense HOM05D003697 ORTHO05D014541 3.0e-10 69.3 85 49.4
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 1.1e-09 67.4 90 41.1
Psat7g199600 Pisum sativum HOM05D003697 ORTHO05D023078 4.3e-09 65.5 72 51.4
Psat5g083120 Pisum sativum HOM05D003697 ORTHO05D002190 1.3e-08 63.9 62 56.5


User provided reference genes

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