Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045166 Camellia sinensis var. sinensis HOM05D007512 ORTHO05D009524 8.1e-100 367.1 185 100.0
CSS0030250 Camellia sinensis var. sinensis HOM05D007512 ORTHO05D009524 2.1e-92 342.4 195 91.3
Rhsim12G0013200 Rhododendron simsii HOM05D007512 ORTHO05D009524 1.2e-63 246.9 192 68.2
GSVIVG01020824001 Vitis vinifera HOM05D007512 ORTHO05D009524 5.8e-58 228.0 187 61.5
LjContig00049g0018887 Lotus japonicus HOM05D007512 ORTHO05D009524 1.0e-57 227.3 193 60.6
Nn7g38060 Nelumbo nucifera HOM05D007512 ORTHO05D009524 4.9e-57 224.9 195 62.6
Cfa005459 Carpinus fangiana HOM05D007512 ORTHO05D009524 1.1e-56 223.8 193 63.7
Haze_01852 Corylus avellana HOM05D007512 ORTHO05D009524 1.4e-56 223.4 193 64.8
Nn7g38052 Nelumbo nucifera HOM05D007512 ORTHO05D009524 9.3e-56 220.7 186 62.4
CiPaw.09G218400 Carya illinoinensis HOM05D007512 ORTHO05D009524 2.1e-55 219.5 191 60.2
Glyma.02G283200 Glycine max HOM05D007512 ORTHO05D009524 4.6e-55 218.4 183 62.8
QL08p045474 Quercus lobata HOM05D007512 ORTHO05D009524 7.9e-55 217.6 182 63.2
RcHm_v2.0_Chr2g0152451 Rosa chinensis HOM05D007512 ORTHO05D009524 1.0e-54 217.2 190 62.1
arahy.Tifrunner.gnm1.ann1.EFEG4J Arachis hypogaea HOM05D007512 ORTHO05D009524 1.3e-54 216.9 188 59.0
Prupe.3G178900 Prunus persica HOM05D007512 ORTHO05D009524 1.3e-54 216.9 196 57.7
Thecc.01G167000 Theobroma cacao HOM05D007512 ORTHO05D009524 1.5e-53 213.4 192 58.9
Manes.12G132100 Manihot esculenta HOM05D007512 ORTHO05D009524 3.3e-53 212.2 187 59.4
CAN.G946.8 Capsicum annuum HOM05D007512 ORTHO05D009524 5.7e-53 211.5 194 56.7
Migut.J01325 Erythranthe guttata HOM05D007512 ORTHO05D009524 7.4e-53 211.1 191 59.7
TAR626G1484 Trochodendron aralioides HOM05D007512 ORTHO05D009524 7.4e-53 211.1 191 57.6
Gohir.A11G061700 Gossypium hirsutum HOM05D007512 ORTHO05D009524 9.6e-53 210.7 183 60.7
VMungo0647G1345 Vigna mungo HOM05D007512 ORTHO05D009524 9.6e-53 210.7 184 60.3
Gorai.007G071100 Gossypium raimondii HOM05D007512 ORTHO05D009524 1.3e-52 210.3 183 60.7
Sabra02G0045700 Salix brachista HOM05D007512 ORTHO05D009524 1.3e-52 210.3 184 60.3
Lj1C588G3 Lonicera japonica HOM05D007512 ORTHO05D009524 1.6e-52 209.9 186 60.8
MBI18_g45404_MAGBIO Magnolia biondii HOM05D007512 ORTHO05D009524 1.6e-52 209.9 186 57.5
Potri.002G056400 Populus trichocarpa HOM05D007512 ORTHO05D009524 1.6e-52 209.9 189 59.3
ECA246G3016 Erigeron canadensis HOM05D007512 ORTHO05D009524 2.8e-52 209.1 196 57.7
Peaxi162Scf00359g00113 Petunia axillaris HOM05D007512 ORTHO05D009524 8.2e-52 207.6 189 58.7
Psat2g017680 Pisum sativum HOM05D007512 ORTHO05D009524 1.1e-51 207.2 185 59.5
Duzib147G0049 Durio zibethinus HOM05D007512 ORTHO05D009524 1.4e-51 206.8 184 60.9
Gohir.A11G061633 Gossypium hirsutum HOM05D007512 ORTHO05D009524 1.4e-51 206.8 176 60.2
Lalb_Chr11g0069491 Lupinus albus HOM05D007512 ORTHO05D009524 1.4e-51 206.8 185 57.8
Nitab4.5_0001552g0120 Nicotiana tabacum HOM05D007512 ORTHO05D009524 1.4e-51 206.8 186 57.0
Phvul.008G196000 Phaseolus vulgaris HOM05D007512 ORTHO05D009524 1.4e-51 206.8 183 59.6
FvH4_6g38852 Fragaria vesca HOM05D007512 ORTHO05D009524 2.4e-51 206.1 181 60.8
Gohir.D11G065600 Gossypium hirsutum HOM05D007512 ORTHO05D009524 4.1e-51 205.3 183 60.1
Cpa.g.sc53.33 Carica papaya HOM05D007512 ORTHO05D009524 6.9e-51 204.5 184 59.2
Sc23g0003420 Simmondsia chinensis HOM05D007512 ORTHO05D009524 1.5e-50 203.4 182 58.8
Ciclev10032522m.g Citrus clementina HOM05D007512 ORTHO05D009524 3.4e-50 202.2 202 55.0
ClCG11G016580 Citrullus lanatus HOM05D007512 ORTHO05D009524 4.5e-50 201.8 191 57.6
Solyc07g044970.1 Solanum lycopersicum HOM05D007512 ORTHO05D009524 4.5e-50 201.8 196 55.1
Nitab4.5_0007814g0010 Nicotiana tabacum HOM05D007512 ORTHO05D009524 7.6e-50 201.1 185 56.2
Oeu021245.2 Olea europaea HOM05D007512 ORTHO05D009524 7.6e-50 201.1 183 58.5
Dinv27197 Davidia involucrata HOM05D007512 ORTHO05D009524 1.3e-49 200.3 168 64.3
PGSC0003DMG400045865 Solanum tuberosum HOM05D007512 ORTHO05D009524 1.3e-49 200.3 196 54.6
PGSC0003DMG402000923 Solanum tuberosum HOM05D007512 ORTHO05D009524 1.3e-49 200.3 196 54.6
Sopen07g023500 Solanum pennellii HOM05D007512 ORTHO05D009524 1.7e-49 199.9 196 55.1
CsaV3_4G032050 Cucumis sativus L. HOM05D007512 ORTHO05D009524 6.5e-49 198.0 191 55.5
HanXRQChr05g0157121 Helianthus annuus HOM05D007512 ORTHO05D009524 6.5e-49 198.0 189 57.7
MELO3C022965.2 Cucumis melo HOM05D007512 ORTHO05D009524 1.1e-48 197.2 191 55.5
TPR.G8778 Trifolium pratense HOM05D007512 ORTHO05D009524 1.4e-48 196.8 174 58.0
Gohir.D11G065833 Gossypium hirsutum HOM05D007512 ORTHO05D009524 2.5e-48 196.1 166 60.8
Sed0022455 Sechium edule HOM05D007512 ORTHO05D009524 2.5e-48 196.1 189 55.0
Aqoxy1G01494 Aquilegia oxysepala HOM05D007512 ORTHO05D009524 3.2e-48 195.7 187 54.5
COL.COLO4_29884 Corchorus olitorius HOM05D007512 ORTHO05D009524 1.6e-47 193.4 187 56.7
Medtr5g090740 Medicago truncatula HOM05D007512 ORTHO05D009524 1.6e-47 193.4 176 55.7
Ca_06252_v3 Cicer arietinum L. HOM05D007512 ORTHO05D009524 2.1e-47 193.0 180 57.8
TWI14G0908 Tripterygium wilfordii HOM05D007512 ORTHO05D009524 6.1e-47 191.4 195 52.8
AUR62004262 Chenopodium quinoa HOM05D007512 ORTHO05D009524 1.1e-45 187.2 192 52.1
SGA_v2.0_scaffold45G17047 Striga asiatica HOM05D007512 ORTHO05D009524 1.5e-45 186.8 196 54.6
MBI18_g43440_MAGBIO Magnolia biondii HOM05D007512 ORTHO05D009524 4.3e-45 185.3 186 53.2
HPP92_026664 Vanilla planifolia HOM05D007512 ORTHO05D009524 9.7e-45 184.1 187 53.5
Eucgr.A02034 Eucalyptus grandis HOM05D007512 ORTHO05D009524 8.2e-44 181.0 173 56.6
AUR62042750 Chenopodium quinoa HOM05D007512 ORTHO05D009524 5.3e-43 178.3 183 52.5
Os07g0160300 Oryza sativa ssp. japonica HOM05D007512 ORTHO05D009524 2.0e-42 176.4 194 50.5
Ah.05g175540 Amaranthus hybridus HOM05D007512 ORTHO05D009524 2.6e-42 176.0 184 51.1
ATR0763G176 Amborella trichopoda HOM05D007512 ORTHO05D009524 4.5e-42 175.3 198 48.5
unitig_747.g21446 Utricularia gibba HOM05D007512 ORTHO05D009524 5.9e-42 174.9 177 52.0
Zm00001eb300410 Zea mays HOM05D007512 ORTHO05D009524 5.9e-42 174.9 186 52.2
CAN.G358.11 Capsicum annuum HOM05D007512 ORTHO05D009524 1.7e-41 173.3 181 53.6
SEGI_32907 Sequoiadendron giganteum HOM05D007512 ORTHO05D009524 7.7e-34 147.9 162 51.2
AagrBONN_evm.TU.Sc2ySwM_368.3309 Anthoceros agrestis HOM05D007512 ORTHO05D009524 6.5e-33 144.8 197 44.7
Actinidia25705 Actinidia chinensis HOM05D007512 ORTHO05D009524 1.9e-32 143.3 161 50.9
PGR142G3775 Punica granatum HOM05D007512 ORTHO05D009524 3.9e-30 135.6 181 42.0
Actinidia25706 Actinidia chinensis HOM05D007512 ORTHO05D009524 1.5e-29 133.7 168 46.4
Lsat_1_v5_gn_5_21320 Lactuca sativa HOM05D007512 ORTHO05D009524 2.0e-29 133.3 184 44.0
Nitab4.5_0000241g0240 Nicotiana tabacum HOM05D007512 ORTHO05D009524 4.4e-29 132.1 175 45.7
Actinidia18710 Actinidia chinensis HOM05D007512 ORTHO05D009524 5.7e-29 131.7 200 38.0
Actinidia24467 Actinidia chinensis HOM05D007512 ORTHO05D009524 4.8e-28 128.6 127 51.2
Mapoly0032s0087 Marchantia polymorpha HOM05D007512 ORTHO05D009524 2.4e-27 126.3 225 37.3
Pp3c3_10350 Physcomitrium patens HOM05D007512 ORTHO05D009524 2.9e-25 119.4 159 42.1
Pp3c26_9780 Physcomitrium patens HOM05D007512 ORTHO05D009524 6.5e-25 118.2 155 40.6
Actinidia24468 Actinidia chinensis HOM05D007512 ORTHO05D009524 2.5e-24 116.3 166 44.6
Actinidia40448 Actinidia chinensis HOM05D007512 ORTHO05D009524 3.6e-23 112.5 178 41.6
Actinidia02493 Actinidia chinensis HOM05D007512 ORTHO05D009524 1.4e-22 110.5 179 40.8
Actinidia02491 Actinidia chinensis HOM05D007512 ORTHO05D009524 1.3e-20 104.0 184 38.0
SMO367G0698 Selaginella moellendorffii HOM05D007512 ORTHO05D009524 4.8e-20 102.1 144 42.4
Actinidia18709 Actinidia chinensis HOM05D007512 ORTHO05D009524 5.3e-19 98.6 190 35.8
Actinidia22804 Actinidia chinensis HOM05D007512 ORTHO05D009524 1.0e-17 94.4 193 34.2
CSS0013803 Camellia sinensis var. sinensis HOM05D007512 ORTHO05D009524 1.0e-17 94.4 147 36.7
TWI36G1125 Tripterygium wilfordii HOM05D007512 ORTHO05D009524 2.2e-17 93.2 171 32.2
Sabra01G0030800 Salix brachista HOM05D007512 ORTHO05D009524 2.5e-16 89.7 169 33.7
Atru.chr6.2019 Acer truncatum HOM05D007512 ORTHO05D009524 3.6e-15 85.9 86 52.3
Duzib177G0331 Durio zibethinus HOM05D000125 ORTHO05D020513 2.2e-12 76.6 122 36.1
Ca_06242_v3 Cicer arietinum L. HOM05D007512 ORTHO05D009524 3.1e-11 72.8 94 46.8
Sabra09G0120600 Salix brachista HOM05D000125 ORTHO05D020513 3.5e-10 69.3 116 32.8
Actinidia09356 Actinidia chinensis HOM05D007512 ORTHO05D009524 2.9e-09 66.2 87 41.4
Potri.001G044601 Populus trichocarpa HOM05D007512 ORTHO05D009524 1.5e-08 63.9 110 32.7
FAN14G4311 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.9e-08 63.5 116 41.4
FvH4_6g38850 Fragaria vesca HOM05D000876 ORTHO05D000285 3.2e-08 62.8 85 49.4
COL.COLO4_13576 Corchorus olitorius HOM05D007512 ORTHO05D020513 5.5e-08 62.0 110 37.3
Manes.10G123525 Manihot esculenta HOM05D007512 ORTHO05D020513 5.5e-08 62.0 113 31.0
CSS0000822 Camellia sinensis var. sinensis HOM05D000125 ORTHO05D009524 3.6e-07 59.3 58 44.8
Actinidia14260 Actinidia chinensis HOM05D007512 ORTHO05D009524 1.4e-06 57.4 171 31.6
Gohir.A04G031400 Gossypium hirsutum HOM05D000125 ORTHO05D020513 2.3e-06 56.6 127 33.1


User provided reference genes

Program Settings