Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 3.7e-67 258.1 129 100.0
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 6.7e-45 184.1 132 72.0
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 4.8e-43 177.9 134 67.2
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 5.3e-42 174.5 128 70.3
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 2.2e-40 169.1 115 70.4
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.9e-39 166.0 139 61.2
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 9.4e-39 163.7 126 63.5
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 1.2e-38 163.3 132 65.2
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 2.7e-38 162.2 128 61.7
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 8.0e-38 160.6 131 59.5
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 1.4e-37 159.8 129 63.6
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 1.4e-37 159.8 126 64.3
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 1.4e-37 159.8 126 64.3
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 1.8e-37 159.5 121 66.1
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 2.3e-37 159.1 126 61.9
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 2.3e-37 159.1 126 65.1
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 2.3e-37 159.1 127 61.4
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 2.3e-37 159.1 127 61.4
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 2.3e-37 159.1 126 62.7
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 3.0e-37 158.7 122 67.2
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 3.0e-37 158.7 127 60.6
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 3.0e-37 158.7 127 64.6
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 3.0e-37 158.7 120 62.5
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 4.0e-37 158.3 128 60.9
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 5.2e-37 157.9 129 63.6
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 6.8e-37 157.5 132 61.4
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 6.8e-37 157.5 108 67.6
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 8.8e-37 157.1 129 60.5
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 1.2e-36 156.8 122 60.7
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 1.2e-36 156.8 126 62.7
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 1.5e-36 156.4 129 61.2
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.5e-36 156.4 124 65.3
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 2.0e-36 156.0 115 63.5
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 4.4e-36 154.8 126 61.9
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 4.4e-36 154.8 118 62.7
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 9.8e-36 153.7 120 66.7
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 1.3e-35 153.3 125 58.4
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 1.3e-35 153.3 124 59.7
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 1.7e-35 152.9 127 63.8
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 1.7e-35 152.9 131 58.8
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 2.2e-35 152.5 117 61.5
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 2.2e-35 152.5 115 67.8
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 2.2e-35 152.5 126 61.9
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 2.2e-35 152.5 129 59.7
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 2.8e-35 152.1 123 63.4
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 2.8e-35 152.1 122 60.7
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 4.8e-35 151.4 130 61.5
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 4.8e-35 151.4 122 61.5
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 6.3e-35 151.0 125 59.2
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 8.3e-35 150.6 129 57.4
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 8.3e-35 150.6 126 59.5
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 8.3e-35 150.6 126 59.5
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 1.1e-34 150.2 127 59.8
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 1.1e-34 150.2 131 63.4
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 2.4e-34 149.1 129 56.6
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 2.4e-34 149.1 108 63.0
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 2.4e-34 149.1 120 61.7
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 4.1e-34 148.3 128 60.9
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 4.1e-34 148.3 125 56.8
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 5.4e-34 147.9 119 65.5
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 5.4e-34 147.9 119 65.5
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 5.4e-34 147.9 112 63.4
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 5.4e-34 147.9 132 56.8
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 5.4e-34 147.9 87 72.4
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 7.0e-34 147.5 119 60.5
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 7.0e-34 147.5 119 60.5
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 7.0e-34 147.5 119 65.5
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 7.0e-34 147.5 93 73.1
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 7.0e-34 147.5 87 72.4
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 9.1e-34 147.1 111 63.1
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 9.1e-34 147.1 128 60.2
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 1.2e-33 146.7 127 59.8
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 1.2e-33 146.7 132 58.3
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 1.2e-33 146.7 119 60.5
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 1.2e-33 146.7 104 69.2
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 1.6e-33 146.4 119 63.9
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 1.6e-33 146.4 119 60.5
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 1.6e-33 146.4 128 60.2
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 2.0e-33 146.0 112 60.7
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 2.0e-33 146.0 130 56.2
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 2.0e-33 146.0 128 59.4
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 2.0e-33 146.0 129 55.8
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 2.7e-33 145.6 119 63.0
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 2.7e-33 145.6 129 57.4
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 2.7e-33 145.6 129 58.1
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 2.7e-33 145.6 129 58.1
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 2.7e-33 145.6 128 60.9
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 2.7e-33 145.6 96 71.9
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 3.5e-33 145.2 112 63.4
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 3.5e-33 145.2 119 59.7
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 4.5e-33 144.8 119 58.8
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 1.0e-32 143.7 138 54.3
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 1.0e-32 143.7 119 63.0
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 1.0e-32 143.7 121 57.0
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 1.7e-32 142.9 130 55.4
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 1.7e-32 142.9 129 55.8
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 2.3e-32 142.5 130 56.9
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 3.8e-32 141.7 118 59.3
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 6.5e-32 141.0 121 57.9
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 6.5e-32 141.0 116 60.3
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 8.6e-32 140.6 118 60.2
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 1.1e-31 140.2 126 53.2
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 1.1e-31 140.2 128 56.2
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 1.9e-31 139.4 119 61.3
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 1.9e-31 139.4 119 61.3
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 5.5e-31 137.9 114 57.9
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 9.5e-31 137.1 89 65.2
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 1.2e-30 136.7 124 54.8
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 1.6e-30 136.3 134 51.5
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 4.7e-30 134.8 128 57.0
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 6.1e-30 134.4 94 67.0
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 6.8e-29 131.0 119 53.8
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 5.4e-26 121.3 82 63.4
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 5.9e-25 117.9 108 49.1
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 7.8e-25 117.5 108 50.0
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 3.3e-23 112.1 108 50.0
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 3.3e-23 112.1 128 43.0
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 2.8e-22 109.0 88 56.8
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 3.6e-22 108.6 90 53.3
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 3.6e-22 108.6 90 53.3
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 4.7e-22 108.2 110 45.5
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 1.8e-21 106.3 85 57.6
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 6.8e-21 104.4 83 55.4
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 2.7e-17 92.4 111 45.0
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.7e-16 89.7 86 50.0
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 1.8e-13 79.7 73 61.6
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 3.1e-13 79.0 90 38.9
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 2.0e-12 76.3 73 56.2
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 4.9e-11 71.6 103 40.8
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 1.9e-10 69.7 84 38.1
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 8.6e-08 60.8 83 32.5


User provided reference genes

Program Settings