Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045155 Camellia sinensis var. sinensis HOM05D007148 ORTHO05D009047 3.4e-52 208.0 100 100.0
Rhsim04G0143400 Rhododendron simsii HOM05D007148 ORTHO05D009047 6.2e-22 107.5 98 59.2
Actinidia31326 Actinidia chinensis HOM05D007148 ORTHO05D009047 1.1e-21 106.7 97 60.8
Sopen09g003080 Solanum pennellii HOM05D007148 ORTHO05D009047 1.8e-16 89.4 100 54.0
Solyc09g008260.3 Solanum lycopersicum HOM05D007148 ORTHO05D009047 3.0e-16 88.6 98 58.2
Dinv35791 Davidia involucrata HOM05D007148 ORTHO05D009047 8.7e-16 87.0 98 54.1
COL.COLO4_26948 Corchorus olitorius HOM05D007148 ORTHO05D009047 2.8e-14 82.0 98 51.0
Nitab4.5_0008624g0020 Nicotiana tabacum HOM05D007148 ORTHO05D009047 3.7e-14 81.6 96 53.1
Duzib128G0502 Durio zibethinus HOM05D007148 ORTHO05D009047 6.2e-14 80.9 99 50.5
Oeu053686.1 Olea europaea HOM05D007148 ORTHO05D009047 6.2e-14 80.9 95 52.6
Gohir.A01G213200 Gossypium hirsutum HOM05D007148 ORTHO05D009047 8.1e-14 80.5 98 52.0
Manes.08G011400 Manihot esculenta HOM05D007148 ORTHO05D009047 1.1e-13 80.1 98 49.0
ClCG04G009380 Citrullus lanatus HOM05D007148 ORTHO05D009047 1.4e-13 79.7 100 46.0
Nn6g35277 Nelumbo nucifera HOM05D007148 ORTHO05D009047 1.4e-13 79.7 104 46.2
MSTRG.10326 Avicennia marina HOM05D007148 ORTHO05D009047 1.8e-13 79.3 99 48.5
DCAR_014515 Daucus carota HOM05D007148 ORTHO05D009047 2.4e-13 79.0 98 46.9
QL07p043079 Quercus lobata HOM05D007148 ORTHO05D009047 2.4e-13 79.0 100 47.0
Duzib093G0361 Durio zibethinus HOM05D007148 ORTHO05D009047 4.0e-13 78.2 100 48.0
Sabra06G0097500 Salix brachista HOM05D001037 ORTHO05D000888 5.3e-13 77.8 98 46.9
Haze_20525 Corylus avellana HOM05D007534 ORTHO05D009540 9.0e-13 77.0 98 49.0
SalBow3G0477 Salvia bowleyana HOM05D007148 ORTHO05D009047 9.0e-13 77.0 100 48.0
Gorai.002G246600 Gossypium raimondii HOM05D007148 ORTHO05D009047 1.2e-12 76.6 98 50.0
Potri.006G123300 Populus trichocarpa HOM05D007148 ORTHO05D009047 1.2e-12 76.6 98 48.0
CiPaw.09G171600 Carya illinoinensis HOM05D007148 ORTHO05D009047 3.4e-12 75.1 104 47.1
TAR633G2546 Trochodendron aralioides HOM05D007148 ORTHO05D009047 3.4e-12 75.1 100 44.0
GSVIVG01033649001 Vitis vinifera HOM05D007148 ORTHO05D009047 3.4e-12 75.1 96 49.0
Thecc.05G068300 Theobroma cacao HOM05D007148 ORTHO05D009047 4.5e-12 74.7 99 46.5
Migut.J00650 Erythranthe guttata HOM05D007148 ORTHO05D009047 5.8e-12 74.3 100 53.0
Thhalv10013433m.g Eutrema salsugineum HOM05D007148 ORTHO05D009047 5.8e-12 74.3 113 40.7
Gohir.D01G204200 Gossypium hirsutum HOM05D007148 ORTHO05D009047 2.9e-11 72.0 98 48.0
CAN.G900.26 Capsicum annuum HOM05D007148 ORTHO05D009047 4.9e-11 71.2 40 80.0
TWI74G0491 Tripterygium wilfordii HOM05D007148 ORTHO05D009047 4.9e-11 71.2 53 67.9
CsaV3_6G039960 Cucumis sativus L. HOM05D007148 ORTHO05D009047 8.4e-11 70.5 99 44.4
MELO3C024473.2 Cucumis melo HOM05D007148 ORTHO05D009047 1.9e-10 69.3 102 44.1
Eucgr.A01669 Eucalyptus grandis HOM05D007148 ORTHO05D009047 3.2e-10 68.6 105 42.9
Cc06_g04310 Coffea canephora HOM05D007148 ORTHO05D009047 4.2e-10 68.2 92 47.8
ECA233G5868 Erigeron canadensis HOM05D007148 ORTHO05D009047 5.5e-10 67.8 95 42.1
Lsat_1_v5_gn_6_24961 Lactuca sativa HOM05D007148 ORTHO05D009047 5.5e-10 67.8 50 70.0
MD12G1110100 Malus domestica HOM05D007148 ORTHO05D009047 5.5e-10 67.8 100 44.0
Rhsim04G0144100 Rhododendron simsii HOM05D007148 ORTHO05D009047 9.3e-10 67.0 42 71.4
vmacro08783 Vaccinium macrocarpon HOM05D007148 ORTHO05D009047 9.3e-10 67.0 53 62.3
PGR004G2178 Punica granatum HOM05D007148 ORTHO05D009047 1.6e-09 66.2 48 64.6
HanXRQChr13g0400991 Helianthus annuus HOM05D007148 ORTHO05D009047 2.1e-09 65.9 91 45.1
MD04G1092300 Malus domestica HOM05D007148 ORTHO05D009047 2.7e-09 65.5 97 44.3
Peaxi162Scf00847g00313 Petunia axillaris HOM05D007148 ORTHO05D009047 2.7e-09 65.5 40 72.5
BcaC06g32057 Brassica carinata HOM05D002509 ORTHO05D002758 3.5e-09 65.1 84 42.9
THA.LOC104826916 Tarenaya hassleriana HOM05D007148 ORTHO05D009047 3.5e-09 65.1 49 57.1
Aqoxy2G01740 Aquilegia oxysepala HOM05D007148 ORTHO05D009047 4.6e-09 64.7 54 50.0
Carub.0006s0223 Capsella rubella HOM05D007148 ORTHO05D009047 4.6e-09 64.7 49 59.2
MBI19_g45279_MAGBIO Magnolia biondii HOM05D007148 ORTHO05D009047 4.6e-09 64.7 60 50.0
Sed0015836 Sechium edule HOM05D007148 ORTHO05D009047 4.6e-09 64.7 99 41.4
RcHm_v2.0_Chr3g0470391 Rosa chinensis HOM05D007148 ORTHO05D009047 7.9e-09 63.9 101 43.6
AT5G03420 Arabidopsis thaliana HOM05D007148 ORTHO05D009047 1.0e-08 63.5 49 55.1
Sc20g0005580 Simmondsia chinensis HOM05D007148 ORTHO05D009047 1.0e-08 63.5 99 45.5
FAN05G5619 Fragaria x ananassa HOM05D007148 ORTHO05D009047 1.3e-08 63.2 48 58.3
Sp6g39320 Schrenkiella parvula HOM05D007148 ORTHO05D009047 1.8e-08 62.8 49 57.1
AL6G12750 Arabidopsis lyrata HOM05D007148 ORTHO05D009047 2.3e-08 62.4 92 42.4
CANSAT80G2677 Cannabis sativa HOM05D007148 ORTHO05D009047 2.3e-08 62.4 97 39.2
FvH4_6g16490 Fragaria vesca HOM05D007148 ORTHO05D009047 2.3e-08 62.4 70 50.0
FAN14G3336 Fragaria x ananassa HOM05D007148 ORTHO05D009047 2.3e-08 62.4 70 50.0
Lsat_1_v5_gn_4_126560 Lactuca sativa HOM05D007148 ORTHO05D009047 2.3e-08 62.4 48 68.8
Hund20337 Selenicereus undatus HOM05D007148 ORTHO05D009047 2.3e-08 62.4 43 62.8
PSO801G0196 Papaver somniferum HOM05D007148 ORTHO05D009047 3.0e-08 62.0 48 54.2
CARHR209920 Cardamine hirsuta HOM05D007148 ORTHO05D009047 5.1e-08 61.2 106 39.6
FAN02G0401 Fragaria x ananassa HOM05D007148 ORTHO05D009047 6.7e-08 60.8 70 48.6
FAN09G1323 Fragaria x ananassa HOM05D007148 ORTHO05D009047 6.7e-08 60.8 70 48.6
VMungo0720G1794 Vigna mungo HOM05D007148 ORTHO05D009047 6.7e-08 60.8 93 41.9
Prupe.7G128700 Prunus persica HOM05D007148 ORTHO05D009047 8.7e-08 60.5 100 41.0
PSO339G4391 Papaver somniferum HOM05D007148 ORTHO05D009047 1.5e-07 59.7 48 52.1
Atru.chr8.1790 Acer truncatum HOM05D007148 ORTHO05D009047 1.9e-07 59.3 107 41.1
THA.LOC104816351 Tarenaya hassleriana HOM05D007148 ORTHO05D009047 1.9e-07 59.3 49 51.0
BcaC06g32060 Brassica carinata HOM05D007148 ORTHO05D009047 2.5e-07 58.9 86 39.5
C09p73390 Brassica napus HOM05D002509 ORTHO05D002758 2.5e-07 58.9 86 39.5
BolC9t60075H Brassica oleracea HOM05D002509 ORTHO05D002758 2.5e-07 58.9 86 39.5
FAN05G4699 Fragaria x ananassa HOM05D007148 ORTHO05D009047 2.5e-07 58.9 38 60.5
AUR62026914 Chenopodium quinoa HOM05D007148 ORTHO05D009047 3.3e-07 58.5 46 58.7
BraA10t45294Z Brassica rapa HOM05D002509 ORTHO05D002758 4.3e-07 58.2 77 44.2
CANSAT80G0842 Cannabis sativa HOM05D007148 ORTHO05D009047 5.7e-07 57.8 97 37.1
ATR1126G054 Amborella trichopoda HOM05D007148 ORTHO05D009047 7.4e-07 57.4 44 50.0
Aa31LG1G21730 Aethionema arabicum HOM05D007148 ORTHO05D009047 9.6e-07 57.0 97 37.1
arahy.Tifrunner.gnm1.ann1.IRYX6E Arachis hypogaea HOM05D007148 ORTHO05D009047 1.3e-06 56.6 39 59.0
arahy.Tifrunner.gnm1.ann1.J3RTVJ Arachis hypogaea HOM05D007148 ORTHO05D009047 1.3e-06 56.6 39 59.0
Ciclev10012080m.g Citrus clementina HOM05D007148 ORTHO05D009047 1.6e-06 56.2 98 41.8
Glyma.13G141800 Glycine max HOM05D007148 ORTHO05D009047 1.6e-06 56.2 38 55.3
Glyma.10G054600 Glycine max HOM05D007148 ORTHO05D009047 2.1e-06 55.8 40 57.5
Phvul.007G147800 Phaseolus vulgaris HOM05D007148 ORTHO05D009047 2.8e-06 55.5 86 36.0
Lj5g0011331 Lotus japonicus HOM05D007148 ORTHO05D009047 3.7e-06 55.1 41 53.7
Lalb_Chr02g0155781 Lupinus albus HOM05D007148 ORTHO05D009047 3.7e-06 55.1 55 40.0
Ah.08g211560 Amaranthus hybridus HOM05D007148 ORTHO05D009047 4.8e-06 54.7 72 40.3
A10p32590 Brassica napus HOM05D002509 ORTHO05D002758 8.2e-06 53.9 83 36.1


User provided reference genes

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