Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.3e-51 206.1 105 100.0
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.5e-45 185.3 105 92.4
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.9e-38 161.8 106 82.1
CSS0001505 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 4.7e-36 154.5 101 86.1
CSS0016211 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 5.7e-34 147.5 106 78.3
CSS0049977 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.0e-31 139.0 101 79.2
vmacro05819 Vaccinium macrocarpon HOM05D007293 ORTHO05D009143 1.5e-29 132.9 104 71.2
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 9.4e-29 130.2 111 66.7
Rhsim10G0022800 Rhododendron simsii HOM05D007293 ORTHO05D009143 2.3e-27 125.6 104 69.2
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 4.4e-26 121.3 110 61.8
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 1.3e-25 119.8 107 65.4
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 2.2e-25 119.0 107 68.2
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 2.7e-23 112.1 102 63.7
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 2.7e-23 112.1 110 64.5
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 7.7e-23 110.5 103 63.1
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 1.0e-22 110.2 110 63.6
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 2.2e-22 109.0 111 59.5
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 6.8e-19 97.4 108 56.5
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 2.6e-18 95.5 57 82.5
Hma1.2p1_0802F.1_g220360 Hydrangea macrophylla HOM05D007293 ORTHO05D009143 2.6e-18 95.5 107 61.7
Lsat_1_v5_gn_4_182280 Lactuca sativa HOM05D007293 ORTHO05D009143 4.8e-17 91.3 107 54.2
HanXRQChr08g0220621 Helianthus annuus HOM05D007293 ORTHO05D009143 8.3e-17 90.5 108 56.5
SalBow1G2453 Salvia bowleyana HOM05D005882 ORTHO05D009143 2.4e-16 89.0 96 58.3
ECA246G2262 Erigeron canadensis HOM05D007293 ORTHO05D009143 4.5e-15 84.7 65 69.2
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 4.5e-15 84.7 108 50.0
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 4.5e-15 84.7 109 50.5
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 5.9e-15 84.3 110 51.8
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 1.3e-14 83.2 110 50.9
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 2.2e-14 82.4 110 51.8
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 2.9e-14 82.0 107 51.4
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 3.8e-14 81.6 107 49.5
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 3.8e-14 81.6 106 50.9
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 3.8e-14 81.6 106 48.1
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 3.8e-14 81.6 106 50.0
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 6.5e-14 80.9 111 49.5
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 8.5e-14 80.5 105 50.5
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 8.5e-14 80.5 106 50.0
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 1.1e-13 80.1 105 48.6
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 1.9e-13 79.3 105 46.7
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.9e-13 79.3 105 46.7
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.9e-13 79.3 105 46.7
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 3.2e-13 78.6 105 46.7
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 3.2e-13 78.6 105 46.7
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 3.2e-13 78.6 106 49.1
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 3.2e-13 78.6 105 48.6
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 4.2e-13 78.2 105 48.6
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 7.2e-13 77.4 113 49.6
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 7.2e-13 77.4 105 47.6
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 7.2e-13 77.4 106 50.0
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 9.5e-13 77.0 47 78.7
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 1.2e-12 76.6 106 45.3
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 1.6e-12 76.3 108 48.1
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 2.1e-12 75.9 106 50.0
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 2.1e-12 75.9 107 50.5
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 4.7e-12 74.7 108 47.2
CDE04G1122 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 4.7e-12 74.7 69 59.4
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 4.7e-12 74.7 105 47.6
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 8.0e-12 73.9 108 46.3
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 8.0e-12 73.9 108 46.3
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 8.0e-12 73.9 106 50.9
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 1.8e-11 72.8 106 48.1
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 2.3e-11 72.4 105 46.7
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 2.3e-11 72.4 107 49.5
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 2.3e-11 72.4 107 49.5
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 2.3e-11 72.4 105 46.7
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 3.0e-11 72.0 97 50.5
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 3.0e-11 72.0 107 49.5
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 4.0e-11 71.6 108 49.1
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 5.2e-11 71.2 99 44.4
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 5.2e-11 71.2 106 44.3
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 6.8e-11 70.9 107 44.9
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 8.8e-11 70.5 99 44.4
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 1.2e-10 70.1 108 45.4
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 1.2e-10 70.1 108 45.4
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 2.0e-10 69.3 106 44.3
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 2.6e-10 68.9 106 44.3
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 2.6e-10 68.9 110 44.5
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 3.4e-10 68.6 109 45.0
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 4.4e-10 68.2 110 47.3
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 5.7e-10 67.8 94 48.9
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 5.7e-10 67.8 105 42.9
MBI10_g11075_MAGBIO Magnolia biondii HOM05D007293 ORTHO05D009143 5.7e-10 67.8 56 66.1
PSO063G5020 Papaver somniferum HOM05D007293 ORTHO05D009143 5.7e-10 67.8 99 45.5
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 2.2e-09 65.9 102 49.0
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 2.2e-09 65.9 113 41.6
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 2.8e-09 65.5 106 43.4
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 3.7e-09 65.1 106 45.3
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 4.9e-09 64.7 108 43.5
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 6.3e-09 64.3 43 69.8
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 1.8e-08 62.8 101 43.6
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 2.4e-08 62.4 105 45.7
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 2.4e-08 62.4 101 40.6
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 2.4e-08 62.4 113 45.1
PSO832G1108 Papaver somniferum HOM05D007293 ORTHO05D009143 3.1e-08 62.0 99 44.4
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 5.4e-08 61.2 106 40.6
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 1.6e-07 59.7 101 41.6
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 1.6e-07 59.7 101 41.6
ATR0730G001 Amborella trichopoda HOM05D007293 ORTHO05D009143 2.7e-07 58.9 72 54.2
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 2.7e-07 58.9 98 44.9
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 3.5e-07 58.5 90 42.2
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 4.5e-07 58.2 80 46.2
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 4.5e-07 58.2 97 39.2
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 7.7e-07 57.4 85 45.9
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 1.7e-06 56.2 82 40.2
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 1.7e-06 56.2 102 44.1
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 1.7e-06 56.2 73 47.9
Zm00001eb153880 Zea mays HOM05D007293 ORTHO05D009143 1.7e-06 56.2 106 40.6
Ca_13998_v3 Cicer arietinum L. HOM05D007293 ORTHO05D009143 2.3e-06 55.8 103 38.8
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 2.3e-06 55.8 112 40.2
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 2.3e-06 55.8 98 40.8
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 3.8e-06 55.1 105 41.0
PSO339G0117 Papaver somniferum HOM05D007293 ORTHO05D009143 3.8e-06 55.1 99 40.4
CsaV3_5G038050 Cucumis sativus L. HOM05D002091 ORTHO05D002140 5.0e-06 54.7 102 40.2
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 5.0e-06 54.7 102 38.2
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 6.6e-06 54.3 100 38.0
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 6.6e-06 54.3 66 48.5
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 8.6e-06 53.9 99 37.4
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 8.6e-06 53.9 68 50.0


User provided reference genes

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