Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.4e-66 256.1 130 100.0
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 5.6e-31 137.9 111 61.3
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 8.9e-29 130.6 111 64.0
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.5e-28 129.8 116 62.1
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 7.5e-28 127.5 117 63.2
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 9.9e-28 127.1 111 60.4
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 1.7e-27 126.3 111 60.4
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.7e-27 126.3 111 60.4
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.7e-27 126.3 111 60.4
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 2.2e-27 125.9 118 55.9
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 2.2e-27 125.9 117 61.5
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.9e-27 125.6 111 60.4
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 3.7e-27 125.2 112 58.9
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 4.9e-27 124.8 116 60.3
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 4.9e-27 124.8 117 63.2
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 8.3e-27 124.0 114 61.4
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 1.4e-26 123.2 118 60.2
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 1.4e-26 123.2 116 61.2
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.9e-26 122.9 111 61.3
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 2.4e-26 122.5 111 59.5
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 2.4e-26 122.5 117 59.0
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 3.2e-26 122.1 115 56.5
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 5.4e-26 121.3 116 58.6
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 7.1e-26 120.9 117 54.7
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.2e-25 120.2 118 59.3
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 1.6e-25 119.8 114 55.3
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 3.5e-25 118.6 116 57.8
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 6.0e-25 117.9 118 57.6
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 6.0e-25 117.9 116 57.8
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 6.0e-25 117.9 112 58.9
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 1.0e-24 117.1 110 57.3
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.3e-24 116.7 112 57.1
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 2.3e-24 115.9 117 57.3
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 2.3e-24 115.9 116 56.0
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 3.9e-24 115.2 114 57.0
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 3.9e-24 115.2 113 56.6
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 5.1e-24 114.8 115 55.7
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 6.6e-24 114.4 111 58.6
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 6.6e-24 114.4 112 51.8
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 1.9e-23 112.8 116 56.9
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 3.3e-23 112.1 113 54.9
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 5.6e-23 111.3 116 53.4
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 5.6e-23 111.3 116 57.8
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 9.5e-23 110.5 112 54.5
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.2e-22 110.2 111 55.9
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 6.2e-22 107.8 118 55.1
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 6.2e-22 107.8 120 53.3
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 3.1e-21 105.5 112 51.8
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.2e-20 103.6 115 49.6
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 1.5e-20 103.2 111 49.5
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.5e-20 103.2 118 52.5
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.6e-20 102.4 118 53.4
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.6e-20 102.4 118 53.4
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 2.6e-20 102.4 112 50.0
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 9.9e-20 100.5 114 50.9
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.7e-19 99.8 115 50.4
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.7e-19 99.8 112 50.0
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 2.9e-19 99.0 112 50.0
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.9e-19 99.0 114 52.6
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 4.9e-19 98.2 125 48.8
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.9e-19 98.2 114 51.8
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 1.1e-18 97.1 110 53.6
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.4e-18 96.7 112 50.0
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 2.4e-18 95.9 111 50.5
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 1.2e-17 93.6 112 52.7
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 2.7e-17 92.4 112 47.3
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.7e-17 92.4 111 46.8
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 3.5e-17 92.0 110 49.1
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 6.0e-17 91.3 116 47.4
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.3e-16 90.1 111 45.9
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.3e-16 90.1 114 50.0
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 2.3e-16 89.4 111 52.3
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.3e-16 89.4 109 48.6
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 2.3e-16 89.4 109 52.3
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 3.9e-16 88.6 114 51.8
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 3.9e-16 88.6 114 48.2
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 5.1e-16 88.2 109 53.2
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 6.6e-16 87.8 117 48.7
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 8.7e-16 87.4 117 48.7
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 8.7e-16 87.4 113 49.6
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.1e-15 87.0 117 47.9
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.1e-15 87.0 112 50.0
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 4.3e-15 85.1 112 45.5
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 5.6e-15 84.7 112 50.9
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 7.3e-15 84.3 111 43.2
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 9.6e-15 84.0 112 43.8
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 2.1e-14 82.8 116 43.1
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 3.6e-14 82.0 111 44.1
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 3.6e-14 82.0 113 46.0
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 4.8e-14 81.6 123 42.3
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 6.2e-14 81.3 112 46.4
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 6.2e-14 81.3 111 46.8
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 8.1e-14 80.9 110 49.1
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 1.1e-13 80.5 112 44.6
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.8e-13 79.7 118 49.2
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 9.0e-13 77.4 111 43.2
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.2e-12 77.0 116 44.0
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 1.2e-12 77.0 112 42.9
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.5e-12 76.6 112 42.9
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 3.4e-12 75.5 110 41.8
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 4.4e-12 75.1 114 46.5
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 7.6e-12 74.3 112 44.6
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 1.7e-11 73.2 113 45.1
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 3.8e-11 72.0 106 45.3
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 6.4e-11 71.2 112 44.6
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 2.4e-10 69.3 111 41.4
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 2.4e-10 69.3 119 41.2
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.2e-09 67.0 112 42.9
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 1.2e-09 67.0 112 42.9
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 6.0e-09 64.7 107 38.3
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 6.0e-09 64.7 107 38.3
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.7e-08 63.2 99 44.4
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.3e-08 62.8 110 39.1
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 6.6e-08 61.2 54 59.3
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 8.7e-08 60.8 113 38.9
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 1.5e-07 60.1 112 42.0
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 2.5e-07 59.3 118 34.7
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 3.3e-07 58.9 113 42.5
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 9.6e-07 57.4 112 40.2
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.3e-06 57.0 116 33.6
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 2.1e-06 56.2 112 34.8
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 2.1e-06 56.2 119 37.0
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 2.8e-06 55.8 111 42.3
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 2.8e-06 55.8 116 32.8
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 4.8e-06 55.1 111 42.3
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 6.2e-06 54.7 130 32.3
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 8.1e-06 54.3 116 32.8


User provided reference genes

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