Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 0.0e+00 1075.1 548 100.0
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 4.3e-250 867.8 537 80.4
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 3.6e-249 864.8 547 78.6
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 1.4e-240 836.3 536 78.2
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 3.8e-238 828.2 535 77.0
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 1.4e-237 826.2 543 76.1
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 4.6e-236 821.2 539 76.8
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 1.8e-235 819.3 533 77.1
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 1.1e-234 816.6 546 74.7
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 3.3e-234 815.1 527 76.9
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 4.3e-234 814.7 533 77.3
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 4.0e-232 808.1 525 77.9
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 6.9e-232 807.4 520 76.5
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 9.0e-232 807.0 534 76.8
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 3.4e-231 805.1 536 75.4
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 6.5e-230 800.8 537 75.8
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 1.4e-229 799.7 528 75.4
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.2e-228 796.6 538 74.5
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 1.9e-226 789.3 526 77.0
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.5e-226 788.9 534 73.2
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 3.3e-226 788.5 528 74.4
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 1.6e-225 786.2 536 74.1
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 8.2e-225 783.9 545 72.8
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 1.1e-224 783.5 528 74.2
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 3.1e-224 781.9 540 73.9
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 5.3e-224 781.2 521 76.0
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 9.0e-224 780.4 398 100.0
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 2.6e-223 778.9 534 71.5
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 3.4e-223 778.5 532 75.0
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 4.5e-223 778.1 535 73.8
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 1.3e-222 776.5 536 71.3
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 1.3e-222 776.5 522 75.1
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 1.7e-222 776.2 538 72.3
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 1.9e-221 772.7 524 73.5
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 1.9e-221 772.7 535 71.0
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 7.2e-221 770.8 534 72.8
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 1.6e-220 769.6 524 72.5
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 6.1e-220 767.7 529 73.7
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 1.0e-219 766.9 523 73.0
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 2.3e-219 765.8 505 76.6
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 3.0e-219 765.4 527 72.5
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.0e-219 765.4 524 72.5
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 5.1e-219 764.6 536 70.3
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 4.3e-218 761.5 515 74.0
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 6.3e-217 757.7 465 80.2
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 5.3e-216 754.6 483 76.4
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 6.9e-216 754.2 528 71.8
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 6.9e-216 754.2 483 76.4
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 9.1e-216 753.8 527 71.9
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.4e-215 751.9 529 72.8
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 5.0e-214 748.0 519 71.1
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 8.5e-214 747.3 519 71.1
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 1.4e-213 746.5 503 73.6
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 1.9e-213 746.1 529 71.6
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 5.5e-213 744.6 464 79.7
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 9.4e-213 743.8 518 70.8
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 9.4e-213 743.8 526 69.6
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 1.6e-212 743.0 525 70.7
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.6e-212 743.0 515 72.0
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 2.3e-211 739.2 534 70.4
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 8.8e-211 737.3 536 70.0
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 8.8e-211 737.3 537 70.2
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.1e-210 736.9 536 69.8
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 2.6e-210 735.7 535 70.1
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 2.6e-210 735.7 535 70.1
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 2.6e-210 735.7 535 70.1
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 2.6e-210 735.7 478 77.2
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 3.3e-210 735.3 535 70.5
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 7.4e-210 734.2 520 70.4
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 9.7e-210 733.8 521 69.9
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 2.8e-209 732.3 520 72.3
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 2.8e-209 732.3 533 70.0
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 1.1e-208 730.3 520 70.0
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.8e-208 729.6 535 70.7
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 2.4e-208 729.2 538 69.1
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 2.4e-208 729.2 532 70.3
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.4e-208 729.2 530 69.6
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 1.5e-207 726.5 541 68.2
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 2.0e-207 726.1 540 67.6
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 4.5e-207 724.9 540 68.1
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 5.9e-207 724.5 524 69.5
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 7.7e-207 724.2 524 69.5
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 7.7e-207 724.2 524 69.5
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.2e-206 722.6 528 69.5
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 2.9e-206 722.2 537 68.3
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 2.9e-206 722.2 539 67.9
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 6.5e-206 721.1 519 68.6
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 1.1e-205 720.3 537 68.0
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 3.6e-204 715.3 530 66.8
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 8.0e-204 714.1 521 67.4
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 1.4e-203 713.4 534 68.2
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 2.3e-203 712.6 537 65.9
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 2.3e-203 712.6 525 67.0
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 2.3e-203 712.6 526 70.3
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 3.3e-202 708.8 519 66.7
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 7.4e-202 707.6 521 68.7
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 1.7e-201 706.4 534 64.8
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 2.2e-201 706.1 533 65.7
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 6.3e-201 704.5 534 66.1
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 1.4e-200 703.4 519 66.7
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 2.4e-200 702.6 453 78.6
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 1.6e-199 699.9 532 67.1
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 2.6e-199 699.1 519 66.5
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 5.9e-199 698.0 530 67.5
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 2.2e-198 696.0 437 79.6
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 8.5e-198 694.1 529 65.6
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 4.2e-197 691.8 523 66.3
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 1.0e-190 670.6 461 69.8
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 1.6e-188 663.3 471 68.8
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 5.7e-186 654.8 533 60.8
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 1.1e-184 650.6 527 61.5
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 3.8e-182 642.1 403 78.2
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 6.6e-182 641.3 438 72.8
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 4.0e-179 632.1 531 60.5
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 5.9e-175 618.2 547 56.5
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 6.1e-172 608.2 463 63.5
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 1.7e-169 600.1 522 58.8
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 1.9e-168 596.7 386 76.4
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 3.6e-164 582.4 461 62.7
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 2.7e-159 566.2 537 55.9
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 7.6e-154 548.1 395 67.1
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 6.2e-148 528.5 380 66.6
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 6.8e-147 525.0 362 71.5
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 1.1e-139 501.1 324 75.6
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.3e-134 484.2 343 69.7
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 3.4e-130 469.5 469 49.9
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 1.8e-126 457.2 523 47.0
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 4.3e-125 452.6 456 48.7
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 9.6e-125 451.4 326 67.5
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 4.1e-115 419.5 508 43.1
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 7.2e-104 382.1 507 39.6
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 3.6e-103 379.8 258 73.6
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 7.2e-96 355.5 227 79.3
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 3.0e-78 297.0 149 99.3
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 3.6e-71 273.5 194 67.5
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.4e-69 266.9 188 70.7
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 8.9e-62 242.3 180 69.4
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 9.5e-56 222.2 155 73.5
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 2.0e-53 214.5 173 60.1
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.4e-51 208.4 139 74.8
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 7.3e-48 196.1 156 66.0
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 8.9e-46 189.1 160 59.4
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 3.0e-41 174.1 132 65.9
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 2.5e-32 144.4 97 71.1
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 1.5e-29 135.2 150 52.0
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 4.2e-27 127.1 110 59.1
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.6e-21 107.8 504 24.6
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 1.7e-20 105.1 75 70.7
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 1.1e-16 92.4 71 62.0
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 3.4e-13 80.9 67 58.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 3.4e-13 80.9 67 58.2
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 2.8e-07 61.2 46 58.7
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 6.2e-07 60.1 50 52.0
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.4e-06 58.9 46 54.3
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 3.1e-06 57.8 49 57.1


User provided reference genes

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