Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 3.5e-79 298.1 142 100.0
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 6.8e-22 107.8 69 73.9
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 6.8e-22 107.8 69 73.9
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 3.4e-21 105.5 69 72.5
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 9.8e-21 104.0 69 71.0
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 3.1e-19 99.0 69 68.1
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 4.1e-19 98.6 55 83.6
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 5.4e-19 98.2 55 81.8
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 1.2e-18 97.1 69 65.2
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.6e-18 96.7 61 70.5
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.6e-18 96.7 58 77.6
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 1.6e-18 96.7 69 66.7
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 2.0e-18 96.3 69 66.7
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 2.0e-18 96.3 69 66.7
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 2.7e-18 95.9 69 65.2
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 3.5e-18 95.5 55 80.0
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 4.5e-18 95.1 60 75.0
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 4.5e-18 95.1 69 65.2
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 4.5e-18 95.1 69 65.2
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 5.9e-18 94.7 69 66.7
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 5.9e-18 94.7 69 65.2
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 5.9e-18 94.7 55 80.0
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 7.7e-18 94.4 69 65.2
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 1.0e-17 94.0 69 63.8
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 1.3e-17 93.6 55 78.2
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 1.3e-17 93.6 57 75.4
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 1.7e-17 93.2 69 63.8
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.7e-17 93.2 69 66.7
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 1.7e-17 93.2 69 62.3
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 2.3e-17 92.8 60 73.3
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 2.3e-17 92.8 56 78.6
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 2.9e-17 92.4 55 80.0
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 2.9e-17 92.4 55 80.0
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 3.8e-17 92.0 60 73.3
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 3.8e-17 92.0 57 73.7
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.8e-17 92.0 55 78.2
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 5.0e-17 91.7 69 63.8
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 5.0e-17 91.7 69 62.3
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 6.5e-17 91.3 57 73.7
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 6.5e-17 91.3 57 73.7
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 6.5e-17 91.3 57 73.7
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 6.5e-17 91.3 55 78.2
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 6.5e-17 91.3 55 74.5
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 6.5e-17 91.3 55 74.5
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 8.6e-17 90.9 69 62.3
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 8.6e-17 90.9 55 76.4
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 8.6e-17 90.9 55 76.4
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 8.6e-17 90.9 55 76.4
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 8.6e-17 90.9 55 74.5
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 8.6e-17 90.9 60 71.7
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 8.6e-17 90.9 69 62.3
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 8.6e-17 90.9 69 62.3
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 8.6e-17 90.9 56 73.2
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 8.6e-17 90.9 55 74.5
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 8.6e-17 90.9 69 62.3
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 8.6e-17 90.9 69 63.8
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 1.1e-16 90.5 55 76.4
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 1.1e-16 90.5 56 78.6
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 1.1e-16 90.5 69 62.3
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 1.1e-16 90.5 69 62.3
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 1.1e-16 90.5 69 59.4
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 1.9e-16 89.7 60 71.7
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.9e-16 89.7 60 71.7
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.9e-16 89.7 60 71.7
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 1.9e-16 89.7 63 68.3
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.9e-16 89.7 69 60.9
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 2.5e-16 89.4 69 62.3
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 2.5e-16 89.4 69 62.3
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 2.5e-16 89.4 55 74.5
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 3.3e-16 89.0 55 74.5
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 3.3e-16 89.0 55 74.5
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 3.3e-16 89.0 69 60.9
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 3.3e-16 89.0 69 60.9
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 3.3e-16 89.0 69 62.3
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 3.3e-16 89.0 69 60.9
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 3.3e-16 89.0 56 71.4
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 3.3e-16 89.0 55 74.5
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 4.2e-16 88.6 57 70.2
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 4.2e-16 88.6 55 72.7
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 4.2e-16 88.6 69 62.3
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 4.2e-16 88.6 57 71.9
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 5.5e-16 88.2 55 74.5
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 5.5e-16 88.2 55 72.7
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 7.2e-16 87.8 60 70.0
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 7.2e-16 87.8 55 72.7
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 7.2e-16 87.8 55 72.7
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 9.5e-16 87.4 53 75.5
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 9.5e-16 87.4 69 59.4
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 9.5e-16 87.4 69 60.9
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 1.2e-15 87.0 55 72.7
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 1.2e-15 87.0 55 74.5
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 1.2e-15 87.0 55 72.7
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 1.6e-15 86.7 55 72.7
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 1.6e-15 86.7 58 67.2
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 1.6e-15 86.7 57 71.9
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.6e-15 86.7 69 59.4
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 2.1e-15 86.3 55 72.7
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 2.8e-15 85.9 60 70.0
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 2.8e-15 85.9 55 72.7
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 2.8e-15 85.9 69 59.4
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 3.6e-15 85.5 57 70.2
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 3.6e-15 85.5 63 65.1
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 6.1e-15 84.7 55 70.9
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 6.1e-15 84.7 69 60.9
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 1.0e-14 84.0 55 70.9
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 1.8e-14 83.2 55 69.1
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 2.3e-14 82.8 55 70.9
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 2.3e-14 82.8 52 75.0
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 6.8e-14 81.3 69 55.1
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 1.5e-13 80.1 55 67.3
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 9.8e-13 77.4 69 56.5
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 4.9e-12 75.1 87 46.0
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 2.5e-08 62.8 36 80.6
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 8.0e-07 57.8 33 78.8
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 1.4e-06 57.0 78 39.7


User provided reference genes

Program Settings