Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 5.1e-45 184.9 167 100.0
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.2e-41 173.7 167 97.0
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 5.9e-25 118.2 162 61.1
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 7.7e-25 117.9 162 50.6
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 1.6e-22 110.2 138 64.5
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.7e-22 109.4 173 43.4
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 2.7e-22 109.4 106 65.1
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 1.8e-21 106.7 169 52.7
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 3.0e-21 105.9 138 71.0
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 3.9e-21 105.5 162 66.7
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 2.0e-20 103.2 162 42.6
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 3.1e-18 95.9 68 75.0
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.1e-18 95.9 138 44.9
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.1e-18 95.9 138 55.8
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 5.3e-18 95.1 169 53.8
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 5.3e-18 95.1 163 50.3
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 9.1e-18 94.4 101 55.4
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 1.2e-17 94.0 132 46.2
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 1.6e-17 93.6 139 55.4
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 5.9e-17 91.7 106 51.9
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 7.7e-17 91.3 138 71.7
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 7.7e-17 91.3 138 71.7
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 1.3e-16 90.5 73 65.8
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 2.9e-16 89.4 106 49.1
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 3.8e-16 89.0 72 62.5
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 5.0e-16 88.6 73 67.1
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 8.5e-16 87.8 71 63.4
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 4.2e-15 85.5 84 60.7
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 7.2e-15 84.7 137 40.9
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 9.4e-15 84.3 67 70.1
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 9.4e-15 84.3 66 66.7
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 9.4e-15 84.3 136 41.2
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 1.6e-14 83.6 138 50.7
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 2.1e-14 83.2 72 63.9
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 2.1e-14 83.2 73 63.0
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 2.1e-14 83.2 132 55.3
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 4.7e-14 82.0 71 66.2
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 6.1e-14 81.6 73 61.6
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 6.1e-14 81.6 75 58.7
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 8.0e-14 81.3 74 62.2
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 8.0e-14 81.3 137 39.4
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 1.4e-13 80.5 138 52.2
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 1.4e-13 80.5 137 49.6
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 2.3e-13 79.7 74 62.2
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 2.3e-13 79.7 66 69.7
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 2.3e-13 79.7 66 71.2
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 3.0e-13 79.3 81 59.3
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 5.2e-13 78.6 76 56.6
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 5.2e-13 78.6 76 55.3
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 6.7e-13 78.2 75 57.3
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 8.8e-13 77.8 98 45.9
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 8.8e-13 77.8 101 58.4
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 8.8e-13 77.8 140 50.0
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.2e-12 77.4 73 57.5
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 1.2e-12 77.4 107 48.6
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 1.2e-12 77.4 74 62.2
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 1.5e-12 77.0 73 57.5
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 2.0e-12 76.6 71 59.2
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.6e-12 76.3 75 56.0
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 3.3e-12 75.9 76 57.9
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 3.3e-12 75.9 73 56.2
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 3.3e-12 75.9 77 51.9
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 3.3e-12 75.9 73 56.2
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 3.3e-12 75.9 105 44.8
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 3.3e-12 75.9 69 56.5
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 4.4e-12 75.5 72 56.9
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 4.4e-12 75.5 73 56.2
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 4.4e-12 75.5 73 56.2
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 4.4e-12 75.5 73 56.2
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 4.4e-12 75.5 73 56.2
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 4.4e-12 75.5 73 56.2
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 4.4e-12 75.5 77 59.7
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.7e-12 75.1 71 56.3
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 5.7e-12 75.1 68 55.9
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 7.5e-12 74.7 74 55.4
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 7.5e-12 74.7 75 53.3
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 9.7e-12 74.3 74 55.4
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 9.7e-12 74.3 99 52.5
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 1.3e-11 73.9 73 53.4
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 1.3e-11 73.9 107 52.3
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 1.3e-11 73.9 140 54.3
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.3e-11 73.9 80 50.0
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 1.7e-11 73.6 101 41.6
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 1.7e-11 73.6 73 54.8
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.7e-11 73.6 74 54.1
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.7e-11 73.6 77 50.6
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.7e-11 73.6 171 42.7
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 2.2e-11 73.2 75 54.7
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 2.2e-11 73.2 75 54.7
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 2.2e-11 73.2 73 53.4
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 2.2e-11 73.2 73 53.4
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 2.2e-11 73.2 73 53.4
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 2.8e-11 72.8 75 54.7
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 3.7e-11 72.4 77 58.4
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 4.8e-11 72.0 75 54.7
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 4.8e-11 72.0 81 51.9
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 6.3e-11 71.6 75 53.3
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 6.3e-11 71.6 75 53.3
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 6.3e-11 71.6 74 48.6
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 6.3e-11 71.6 72 54.2
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 6.3e-11 71.6 76 55.3
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 8.2e-11 71.2 73 53.4
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 8.2e-11 71.2 78 55.1
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 8.2e-11 71.2 71 59.2
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 8.2e-11 71.2 91 47.3
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.1e-10 70.9 72 54.2
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 1.1e-10 70.9 69 62.3
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.1e-10 70.9 72 52.8
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 1.4e-10 70.5 73 52.1
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 1.4e-10 70.5 74 52.7
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.4e-10 70.5 76 52.6
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.8e-10 70.1 134 36.6
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 1.8e-10 70.1 61 63.9
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 2.4e-10 69.7 71 53.5
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 2.4e-10 69.7 71 53.5
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 2.4e-10 69.7 69 59.4
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 2.4e-10 69.7 77 49.4
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 2.4e-10 69.7 69 58.0
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 3.1e-10 69.3 72 56.9
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 5.3e-10 68.6 75 50.7
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 5.3e-10 68.6 75 50.7
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 5.3e-10 68.6 68 58.8
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 7.0e-10 68.2 72 51.4
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 9.1e-10 67.8 70 54.3
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 9.1e-10 67.8 72 52.8
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.2e-09 67.4 75 52.0
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.2e-09 67.4 73 52.1
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.2e-09 67.4 73 52.1
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 1.2e-09 67.4 76 50.0
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 1.2e-09 67.4 69 55.1
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.2e-09 67.4 71 52.1
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 2.7e-09 66.2 71 52.1
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 2.7e-09 66.2 69 53.6
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 2.7e-09 66.2 69 55.1
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 2.7e-09 66.2 71 47.9
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 2.7e-09 66.2 75 48.0
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 2.7e-09 66.2 81 45.7
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 3.5e-09 65.9 135 62.2
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 4.5e-09 65.5 73 46.6
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 4.5e-09 65.5 72 50.0
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 5.9e-09 65.1 71 53.5
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 5.9e-09 65.1 71 53.5
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 5.9e-09 65.1 69 55.1
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 5.9e-09 65.1 75 50.7
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 7.7e-09 64.7 139 71.2
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 1.0e-08 64.3 74 48.6
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 1.3e-08 63.9 71 54.9
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 1.7e-08 63.5 70 52.9
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 1.7e-08 63.5 70 52.9
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 1.7e-08 63.5 70 52.9
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.7e-08 63.5 74 52.7
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 2.2e-08 63.2 103 40.8
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 2.2e-08 63.2 76 50.0
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 2.9e-08 62.8 69 49.3
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 3.8e-08 62.4 65 52.3
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 5.0e-08 62.0 71 50.7
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 8.5e-08 61.2 71 53.5
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 8.5e-08 61.2 65 50.8
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 8.5e-08 61.2 70 50.0
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.1e-07 60.8 69 50.7
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 1.5e-07 60.5 104 40.4
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 1.9e-07 60.1 67 49.3
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.9e-07 60.1 80 47.5
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 2.5e-07 59.7 69 49.3
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 4.2e-07 58.9 72 50.0
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 4.2e-07 58.9 74 43.2
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 7.2e-07 58.2 67 47.8
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 1.6e-06 57.0 134 39.6
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 6.1e-06 55.1 69 42.0
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 6.1e-06 55.1 69 42.0


User provided reference genes

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