Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045089 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 7.8e-31 137.9 68 100.0
CSS0009451 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 5.2e-27 125.2 68 89.7
CSS0018723 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 1.2e-26 124.0 68 89.7
CSS0020656 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 4.1e-24 115.5 61 91.8
Actinidia26982 Actinidia chinensis HOM05D003506 ORTHO05D004063 3.4e-18 95.9 69 68.1
Rhsim03G0013500 Rhododendron simsii HOM05D003506 ORTHO05D004063 2.9e-17 92.8 70 68.6
Rhsim03G0012900 Rhododendron simsii HOM05D003506 ORTHO05D004063 3.7e-17 92.4 70 68.6
Rhsim03G0013200 Rhododendron simsii HOM05D003506 ORTHO05D004063 3.7e-17 92.4 70 68.6
Rhsim03G0013700 Rhododendron simsii HOM05D003506 ORTHO05D004063 7.1e-16 88.2 70 65.7
Rhsim03G0054300 Rhododendron simsii HOM05D003506 ORTHO05D004063 8.6e-14 81.3 70 62.9
Actinidia11819 Actinidia chinensis HOM05D003506 ORTHO05D004063 3.3e-13 79.3 69 59.4
CSS0021977 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 2.8e-12 76.3 69 56.5
Cc08_g04930 Coffea canephora HOM05D003506 ORTHO05D004063 2.4e-11 73.2 67 64.2
Cc08_g04830 Coffea canephora HOM05D003506 ORTHO05D004063 4.0e-11 72.4 67 62.7
CSS0044487 Camellia sinensis var. sinensis HOM05D003506 ORTHO05D004063 2.0e-10 70.1 69 53.6
Cc10_g11570 Coffea canephora HOM05D003506 ORTHO05D004063 2.0e-10 70.1 67 59.7
Cc00_g33500 Coffea canephora HOM05D003506 ORTHO05D004063 7.6e-10 68.2 50 70.0
RhsimUnG0207500 Rhododendron simsii HOM05D003506 ORTHO05D004063 7.6e-10 68.2 69 58.0
Hma1.2p1_2475F.1_g322790 Hydrangea macrophylla HOM05D003506 ORTHO05D004063 1.7e-09 67.0 70 55.7
Lj1A1215T59 Lonicera japonica HOM05D003506 ORTHO05D004063 2.2e-09 66.6 68 51.5
Thecc.03G312300 Theobroma cacao HOM05D003506 ORTHO05D004063 3.8e-09 65.9 68 54.4
Cc00_g22760 Coffea canephora HOM05D003506 ORTHO05D004063 1.9e-08 63.5 60 65.0
PGR042G2042 Punica granatum HOM05D003506 ORTHO05D004063 3.2e-08 62.8 70 50.0
Lsat_1_v5_gn_1_124100 Lactuca sativa HOM05D003506 ORTHO05D004063 4.2e-08 62.4 61 54.1
CANSAT56G2852 Cannabis sativa HOM05D003506 ORTHO05D004063 9.3e-08 61.2 68 44.1
Lsat_1_v5_gn_1_123181 Lactuca sativa HOM05D003506 ORTHO05D004063 9.3e-08 61.2 61 54.1
FvH4_6g22120 Fragaria vesca HOM05D003506 ORTHO05D004063 1.6e-07 60.5 51 58.8
FAN14G0755 Fragaria x ananassa HOM05D003506 ORTHO05D004063 1.6e-07 60.5 51 58.8
MD14G1055300 Malus domestica HOM05D003506 ORTHO05D004063 1.6e-07 60.5 51 56.9
TWI60G1006 Tripterygium wilfordii HOM05D003506 ORTHO05D004063 2.7e-07 59.7 70 48.6
Atru.chr2.1012 Acer truncatum HOM05D003506 ORTHO05D004063 3.5e-07 59.3 68 45.6
Lj2C372T7 Lonicera japonica HOM05D003506 ORTHO05D004063 6.0e-07 58.5 68 47.1
Prupe.7G078000 Prunus persica HOM05D003506 ORTHO05D004063 7.8e-07 58.2 63 54.0
Prupe.7G078200 Prunus persica HOM05D003506 ORTHO05D004063 7.8e-07 58.2 63 54.0
QL12p009920 Quercus lobata HOM05D003506 ORTHO05D004063 7.8e-07 58.2 68 47.1
Cpa.g.c37786 Carica papaya HOM05D003506 ORTHO05D004063 1.0e-06 57.8 68 48.5
Dinv40460 Davidia involucrata HOM05D003506 ORTHO05D004063 1.0e-06 57.8 77 46.8
QL12p010090 Quercus lobata HOM05D003506 ORTHO05D004063 1.0e-06 57.8 68 47.1
Cpa.g.sc727.3 Carica papaya HOM05D003506 ORTHO05D004063 1.3e-06 57.4 68 51.5
COL.COLO4_16912 Corchorus olitorius HOM05D003506 ORTHO05D004063 2.3e-06 56.6 67 49.3
Cpa.g.sc47.17 Carica papaya HOM05D003506 ORTHO05D004063 3.9e-06 55.8 58 48.3
QL12p010199 Quercus lobata HOM05D003506 ORTHO05D004063 3.9e-06 55.8 68 45.6
Cpa.g.sc27.154 Carica papaya HOM05D003506 ORTHO05D004063 6.6e-06 55.1 68 48.5
Haze_19427 Corylus avellana HOM05D003506 ORTHO05D004063 6.6e-06 55.1 57 54.4
Sed0023391 Sechium edule HOM05D003506 ORTHO05D004063 6.6e-06 55.1 51 51.0
Gohir.A08G152600 Gossypium hirsutum HOM05D003506 ORTHO05D004063 8.7e-06 54.7 60 50.0
QL12p009886 Quercus lobata HOM05D003506 ORTHO05D004063 8.7e-06 54.7 56 55.4
QL12p010549 Quercus lobata HOM05D003506 ORTHO05D004063 8.7e-06 54.7 56 55.4


User provided reference genes

Program Settings