Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045088 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 8.4e-64 246.9 128 100.0
CSS0036720 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 7.4e-60 233.8 131 94.7
CSS0040700 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 7.4e-60 233.8 131 94.7
CSS0027656 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.1e-59 232.3 131 93.9
Rhsim01G0201300 Rhododendron simsii HOM05D003908 ORTHO05D004488 1.5e-57 226.1 131 89.3
Rhsim01G0270200 Rhododendron simsii HOM05D003908 ORTHO05D004488 2.0e-57 225.7 131 89.3
arahy.Tifrunner.gnm1.ann1.95Q6AF Arachis hypogaea HOM05D003908 ORTHO05D004488 2.6e-57 225.3 131 90.1
arahy.Tifrunner.gnm1.ann1.Y10HXA Arachis hypogaea HOM05D003908 ORTHO05D004488 4.5e-57 224.6 131 89.3
Actinidia19977 Actinidia chinensis HOM05D003908 ORTHO05D004488 5.8e-57 224.2 131 89.3
Actinidia27523 Actinidia chinensis HOM05D003908 ORTHO05D004488 5.8e-57 224.2 131 89.3
arahy.Tifrunner.gnm1.ann1.LT9XWZ Arachis hypogaea HOM05D003908 ORTHO05D004488 5.8e-57 224.2 131 88.5
Dinv34562 Davidia involucrata HOM05D003908 ORTHO05D004488 7.6e-57 223.8 131 89.3
TAR633G1149 Trochodendron aralioides HOM05D003908 ORTHO05D004488 7.6e-57 223.8 131 89.3
Aqoxy5G00367 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 1.7e-56 222.6 131 87.8
Aqoxy6G02470 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 1.7e-56 222.6 131 87.0
Hma1.2p1_0760F.1_g214230 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 2.9e-56 221.9 131 87.0
MBI07_g21062_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 3.8e-56 221.5 131 87.8
CSS0040042 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 4.9e-56 221.1 131 87.8
Potri.005G217600 Populus trichocarpa HOM05D003908 ORTHO05D004488 4.9e-56 221.1 131 88.5
GSVIVG01031574001 Vitis vinifera HOM05D003908 ORTHO05D004488 4.9e-56 221.1 131 87.0
VMungo0251G3698 Vigna mungo HOM05D003908 ORTHO05D004488 6.5e-56 220.7 131 87.8
Hma1.2p1_0172F.1_g076150 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 8.4e-56 220.3 131 87.8
unitig_22.g5278 Utricularia gibba HOM05D003908 ORTHO05D004488 8.4e-56 220.3 131 87.8
Gohir.D08G206400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.1e-55 219.9 131 87.0
Gorai.004G218600 Gossypium raimondii HOM05D003908 ORTHO05D004488 1.1e-55 219.9 131 87.0
Thecc.01G268300 Theobroma cacao HOM05D003908 ORTHO05D004488 1.1e-55 219.9 131 87.8
CiPaw.08G123800 Carya illinoinensis HOM05D003908 ORTHO05D004488 1.4e-55 219.5 131 87.8
Duzib138G1305 Durio zibethinus HOM05D003908 ORTHO05D004488 1.4e-55 219.5 131 87.0
MBI10_g16831_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 1.4e-55 219.5 131 86.3
Glyma.05G135300 Glycine max HOM05D003908 ORTHO05D004488 1.9e-55 219.2 131 86.3
Glyma.08G090500 Glycine max HOM05D003908 ORTHO05D004488 1.9e-55 219.2 131 86.3
Nitab4.5_0000360g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 3.2e-55 218.4 131 87.0
Nitab4.5_0002776g0060 Nicotiana tabacum HOM05D003908 ORTHO05D004488 3.2e-55 218.4 131 87.0
Phvul.002G186900 Phaseolus vulgaris HOM05D003908 ORTHO05D004488 3.2e-55 218.4 131 86.3
Psat7g086640 Pisum sativum HOM05D003908 ORTHO05D004488 3.2e-55 218.4 131 87.0
THA.LOC104825983 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 3.2e-55 218.4 131 87.0
TWI12G1100 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 3.2e-55 218.4 131 84.7
Cfa006421 Carpinus fangiana HOM05D003908 ORTHO05D004488 4.2e-55 218.0 131 87.0
Gohir.A08G188000 Gossypium hirsutum HOM05D003908 ORTHO05D004488 4.2e-55 218.0 131 86.3
Sabra05G0166800 Salix brachista HOM05D003908 ORTHO05D004488 4.2e-55 218.0 131 86.3
Nitab4.5_0000443g0180 Nicotiana tabacum HOM05D003908 ORTHO05D004488 5.5e-55 217.6 131 85.5
ECA240G0363 Erigeron canadensis HOM05D003908 ORTHO05D004488 9.3e-55 216.9 131 85.5
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 9.3e-55 216.9 131 85.5
Thecc.05G283700 Theobroma cacao HOM05D003908 ORTHO05D004488 9.3e-55 216.9 131 85.5
Ca_18213_v3 Cicer arietinum L. HOM05D003908 ORTHO05D004488 1.2e-54 216.5 131 86.3
Gohir.A08G215400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.2e-54 216.5 131 85.5
Gorai.004G246600 Gossypium raimondii HOM05D003908 ORTHO05D004488 1.2e-54 216.5 131 85.5
THA.LOC104801254 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 1.2e-54 216.5 131 86.3
ClCG03G017370 Citrullus lanatus HOM05D003908 ORTHO05D004488 1.6e-54 216.1 131 86.3
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 1.6e-54 216.1 131 85.5
Ciclev10002833m.g Citrus clementina HOM05D003908 ORTHO05D004488 2.1e-54 215.7 131 86.3
MELO3C015218.2 Cucumis melo HOM05D003908 ORTHO05D004488 2.7e-54 215.3 129 86.8
CsaV3_1G042520 Cucumis sativus L. HOM05D003908 ORTHO05D004488 2.7e-54 215.3 129 86.8
Prupe.5G006500 Prunus persica HOM05D003908 ORTHO05D004488 2.7e-54 215.3 131 85.5
PGSC0003DMG400009421 Solanum tuberosum HOM05D003908 ORTHO05D004488 2.7e-54 215.3 131 85.5
Peaxi162Scf00199g00925 Petunia axillaris HOM05D003908 ORTHO05D004488 3.5e-54 214.9 131 85.5
Duzib106G0327 Durio zibethinus HOM05D003908 ORTHO05D004488 4.6e-54 214.5 129 85.3
Prupe.6G005500 Prunus persica HOM05D003908 ORTHO05D004488 4.6e-54 214.5 131 85.5
Zm00001eb330190 Zea mays HOM05D003908 ORTHO05D004488 4.6e-54 214.5 131 84.7
Lj4g0023890 Lotus japonicus HOM05D003908 ORTHO05D004488 6.0e-54 214.2 131 84.0
Nn3g19495 Nelumbo nucifera HOM05D003908 ORTHO05D004488 6.0e-54 214.2 131 86.3
ATR0787G044 Amborella trichopoda HOM05D003908 ORTHO05D004488 7.9e-54 213.8 131 84.7
CAN.G1299.5 Capsicum annuum HOM05D003908 ORTHO05D004488 7.9e-54 213.8 131 84.0
Sed0024016 Sechium edule HOM05D003908 ORTHO05D004488 7.9e-54 213.8 131 84.7
Hund02874 Selenicereus undatus HOM05D003908 ORTHO05D004488 7.9e-54 213.8 129 83.7
Sc17g0001030 Simmondsia chinensis HOM05D003908 ORTHO05D004488 7.9e-54 213.8 131 83.2
Solyc02g068450.3 Solanum lycopersicum HOM05D003908 ORTHO05D004488 7.9e-54 213.8 131 84.7
Sopen02g017590 Solanum pennellii HOM05D003908 ORTHO05D004488 7.9e-54 213.8 131 84.7
CANSAT21G0496 Cannabis sativa HOM05D003908 ORTHO05D004488 1.0e-53 213.4 131 84.0
Lj1g0011223 Lotus japonicus HOM05D003908 ORTHO05D004488 1.0e-53 213.4 131 87.0
TPR.G34752 Trifolium pratense HOM05D003908 ORTHO05D004488 1.0e-53 213.4 131 83.2
Ah.02g111400 Amaranthus hybridus HOM05D003908 ORTHO05D004488 1.3e-53 213.0 129 83.7
MSTRG.21514 Avicennia marina HOM05D003908 ORTHO05D004488 1.3e-53 213.0 131 84.0
Lalb_Chr12g0209211 Lupinus albus HOM05D003908 ORTHO05D004488 1.3e-53 213.0 131 84.0
Sed0027410 Sechium edule HOM05D003908 ORTHO05D004488 1.3e-53 213.0 131 84.7
Aa31LG5G2250 Aethionema arabicum HOM05D003908 ORTHO05D004488 1.8e-53 212.6 131 84.0
Eucgr.B02621 Eucalyptus grandis HOM05D003908 ORTHO05D004488 3.0e-53 211.8 131 85.5
Gohir.D08G232100 Gossypium hirsutum HOM05D003908 ORTHO05D004488 3.0e-53 211.8 131 84.7
Cpa.g.sc117.89 Carica papaya HOM05D003908 ORTHO05D004488 3.9e-53 211.5 131 84.0
Eucgr.C04384 Eucalyptus grandis HOM05D003908 ORTHO05D004488 5.1e-53 211.1 131 84.7
FvH4_6g02960 Fragaria vesca HOM05D003908 ORTHO05D004488 5.1e-53 211.1 131 84.0
Manes.07G050600 Manihot esculenta HOM05D003908 ORTHO05D004488 5.1e-53 211.1 131 84.0
SalBow3G3620 Salvia bowleyana HOM05D003908 ORTHO05D004488 5.1e-53 211.1 131 83.2
TWI18G0751 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 5.1e-53 211.1 131 83.2
Zm00001eb111070 Zea mays HOM05D003908 ORTHO05D004488 5.1e-53 211.1 131 83.2
Atru.chr4.2009 Acer truncatum HOM05D003908 ORTHO05D004488 6.7e-53 210.7 131 83.2
Oeu018177.1 Olea europaea HOM05D003908 ORTHO05D004488 6.7e-53 210.7 131 83.2
Os02g0824700 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 6.7e-53 210.7 131 84.0
Os04g0137500 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 6.7e-53 210.7 131 84.0
Lsat_1_v5_gn_6_91060 Lactuca sativa HOM05D003908 ORTHO05D004488 1.1e-52 209.9 131 80.2
PGR031G1854 Punica granatum HOM05D003908 ORTHO05D004488 1.1e-52 209.9 131 85.5
QL03p025800 Quercus lobata HOM05D003908 ORTHO05D004488 1.5e-52 209.5 130 83.1
Atru.chr2.813 Acer truncatum HOM05D003908 ORTHO05D004488 1.9e-52 209.1 131 82.4
COL.COLO4_15346 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.9e-52 209.1 129 83.7
Migut.D00367 Erythranthe guttata HOM05D003908 ORTHO05D004488 1.9e-52 209.1 131 82.4
FAN05G0658 Fragaria x ananassa HOM05D003908 ORTHO05D004488 1.9e-52 209.1 131 83.2
FAN14G5491 Fragaria x ananassa HOM05D003908 ORTHO05D004488 1.9e-52 209.1 131 83.2
Gohir.A13G052900 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.9e-52 209.1 131 83.2
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 2.5e-52 208.8 123 87.0
CDE09G0316 Ceratophyllum demersum HOM05D003908 ORTHO05D004488 2.5e-52 208.8 129 82.9
FAN09G2689 Fragaria x ananassa HOM05D003908 ORTHO05D004488 3.3e-52 208.4 131 83.2
HPP92_018775 Vanilla planifolia HOM05D003908 ORTHO05D004488 3.3e-52 208.4 131 82.4
RcHm_v2.0_Chr3g0451151 Rosa chinensis HOM05D003908 ORTHO05D004488 5.7e-52 207.6 131 83.2
EL10Ac5g10467 Beta vulgaris HOM05D003908 ORTHO05D004488 9.6e-52 206.8 130 80.8
vmacro14877 Vaccinium macrocarpon HOM05D003908 ORTHO05D004488 9.6e-52 206.8 160 72.5
HPP92_001854 Vanilla planifolia HOM05D003908 ORTHO05D004488 9.6e-52 206.8 131 81.7
Gorai.013G079800 Gossypium raimondii HOM05D003908 ORTHO05D004488 1.3e-51 206.5 131 82.4
Thhalv10029066m.g Eutrema salsugineum HOM05D003908 ORTHO05D004488 1.6e-51 206.1 126 83.3
BcaB01g02026 Brassica carinata HOM05D003908 ORTHO05D004488 2.1e-51 205.7 126 82.5
BcaB01g02477 Brassica carinata HOM05D003908 ORTHO05D004488 2.1e-51 205.7 126 82.5
BcaC04g24002 Brassica carinata HOM05D003908 ORTHO05D004488 2.1e-51 205.7 126 82.5
A03p30970 Brassica napus HOM05D003908 ORTHO05D004488 2.1e-51 205.7 126 82.5
A09p02050 Brassica napus HOM05D003908 ORTHO05D004488 2.1e-51 205.7 126 82.5
C09p02140 Brassica napus HOM05D003908 ORTHO05D004488 2.1e-51 205.7 126 82.5
BolC9t53144H Brassica oleracea HOM05D003908 ORTHO05D004488 2.1e-51 205.7 126 82.5
Cc09_g07930 Coffea canephora HOM05D003908 ORTHO05D004488 2.8e-51 205.3 131 79.4
BcaC01g06745 Brassica carinata HOM05D003908 ORTHO05D004488 4.8e-51 204.5 126 81.7
C03p37740 Brassica napus HOM05D003908 ORTHO05D004488 4.8e-51 204.5 126 81.7
BolC3t16064H Brassica oleracea HOM05D003908 ORTHO05D004488 4.8e-51 204.5 126 81.7
BraA09t35854Z Brassica rapa HOM05D003908 ORTHO05D004488 4.8e-51 204.5 129 80.6
CARHR250910 Cardamine hirsuta HOM05D003908 ORTHO05D004488 4.8e-51 204.5 126 81.0
Sp6g02530 Schrenkiella parvula HOM05D003908 ORTHO05D004488 4.8e-51 204.5 126 82.5
AL6G50430 Arabidopsis lyrata HOM05D003908 ORTHO05D004488 8.2e-51 203.8 126 81.0
AT4G02620 Arabidopsis thaliana HOM05D003908 ORTHO05D004488 8.2e-51 203.8 126 81.0
Carub.0006s3452 Capsella rubella HOM05D003908 ORTHO05D004488 8.2e-51 203.8 126 81.0
Gohir.D13G069500 Gossypium hirsutum HOM05D003908 ORTHO05D004488 8.2e-51 203.8 131 80.9
arahy.Tifrunner.gnm1.ann1.XQ21SD Arachis hypogaea HOM05D003908 ORTHO05D004488 1.1e-50 203.4 110 93.6
BraA03t12274Z Brassica rapa HOM05D003908 ORTHO05D004488 1.4e-50 203.0 133 78.2
Nitab4.5_0002305g0050 Nicotiana tabacum HOM05D003908 ORTHO05D004488 3.1e-50 201.8 112 90.2
MD04G1224300 Malus domestica HOM05D003908 ORTHO05D004488 4.1e-50 201.4 115 88.7
MD12G1241000 Malus domestica HOM05D003908 ORTHO05D004488 4.1e-50 201.4 115 89.6
PSO210G0243 Papaver somniferum HOM05D003908 ORTHO05D004488 4.1e-50 201.4 128 82.8
PSO832G4196 Papaver somniferum HOM05D003908 ORTHO05D004488 4.1e-50 201.4 128 82.8
Dinv04731 Davidia involucrata HOM05D003908 ORTHO05D004488 6.9e-50 200.7 115 87.8
HanXRQChr03g0088561 Helianthus annuus HOM05D003908 ORTHO05D004488 2.0e-49 199.1 115 87.8
PSO135G0069 Papaver somniferum HOM05D003908 ORTHO05D004488 2.6e-49 198.7 131 80.9
C02p39240 Brassica napus HOM05D003908 ORTHO05D004488 3.4e-49 198.4 139 74.1
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 3.4e-49 198.4 124 78.2
PSO384G1262 Papaver somniferum HOM05D003908 ORTHO05D004488 7.6e-49 197.2 128 81.2
BolC2t09935H Brassica oleracea HOM05D003908 ORTHO05D004488 1.0e-48 196.8 139 73.4
CSS0044738 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.3e-48 196.4 117 90.6
Duzib133G0635 Durio zibethinus HOM05D003908 ORTHO05D004488 6.5e-48 194.1 115 87.0
Peaxi162Scf00198g01017 Petunia axillaris HOM05D003908 ORTHO05D004488 1.9e-47 192.6 125 80.0
Ciclev10022651m.g Citrus clementina HOM05D003908 ORTHO05D004488 1.8e-45 186.0 156 67.3
Pp3c25_8080 Physcomitrium patens HOM05D003908 ORTHO05D004488 2.3e-45 185.7 128 74.2
Pp3c6_17470 Physcomitrium patens HOM05D003908 ORTHO05D004488 3.0e-45 185.3 125 72.8
CSS0024256 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 6.7e-45 184.1 105 86.7
CSS0029390 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 6.7e-45 184.1 105 86.7
Mapoly0079s0004 Marchantia polymorpha HOM05D003908 ORTHO05D004488 1.5e-44 183.0 123 73.2
CSS0046821 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.5e-44 182.2 100 88.0
Haze_21722 Corylus avellana HOM05D003908 ORTHO05D004488 3.7e-43 178.3 129 74.4
SMO367G0680 Selaginella moellendorffii HOM05D003908 ORTHO05D004488 1.1e-42 176.8 126 68.3
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 6.9e-42 174.1 100 87.0
CSS0043230 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.4e-41 171.8 100 83.0
CBR_g38932 Chara braunii HOM05D003908 ORTHO05D004488 2.2e-40 169.1 121 70.2
BcaC03g16154 Brassica carinata HOM05D003908 ORTHO05D004488 5.0e-40 167.9 98 81.6
Actinidia04661 Actinidia chinensis HOM05D003908 ORTHO05D004488 4.2e-39 164.9 110 80.0
Actinidia21151 Actinidia chinensis HOM05D003908 ORTHO05D004488 4.2e-39 164.9 110 80.0
Haze_04363 Corylus avellana HOM05D003908 ORTHO05D004488 6.1e-38 161.0 89 91.0
CSS0038153 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.0e-37 158.7 100 79.0
TAR362G1230 Trochodendron aralioides HOM05D003908 ORTHO05D004488 2.5e-36 155.6 103 77.7
PRCOL_00000544 Prasinoderma coloniale HOM05D003908 ORTHO05D004488 3.7e-35 151.8 113 63.7
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 4.8e-35 151.4 82 89.0
COL.COLO4_06708 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.1e-34 150.2 82 87.8
MCO03G460 Micromonas commoda HOM05D003908 ORTHO05D004488 1.4e-34 149.8 115 65.2
CiPaw.04G181400 Carya illinoinensis HOM05D003908 ORTHO05D004488 1.8e-34 149.4 89 82.0
COL.COLO4_30210 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.8e-34 149.4 131 67.2
Hund09564 Selenicereus undatus HOM05D003908 ORTHO05D004488 3.1e-34 148.7 129 64.3
Cre10.g446550 Chlamydomonas reinhardtii HOM05D003908 ORTHO05D004488 5.0e-32 141.4 115 58.3
SEGI_40634 Sequoiadendron giganteum HOM05D003908 ORTHO05D004488 8.2e-27 124.0 78 78.2
BcaB05g23651 Brassica carinata HOM05D003908 ORTHO05D004488 1.2e-25 120.2 150 50.0
Nitab4.5_0000138g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 2.9e-24 115.5 63 88.9
Lalb_Chr20g0122801 Lupinus albus HOM05D003908 ORTHO05D004488 1.1e-23 113.6 80 75.0
Nitab4.5_0008708g0010 Nicotiana tabacum HOM05D003908 ORTHO05D004488 2.5e-23 112.5 68 80.9
AagrBONN_evm.TU.Sc2ySwM_368.148 Anthoceros agrestis HOM05D003908 ORTHO05D004488 1.8e-21 106.3 74 70.3
Haze_26154 Corylus avellana HOM05D003908 ORTHO05D004488 1.5e-20 103.2 109 44.0
Lalb_Chr20g0122811 Lupinus albus HOM05D003908 ORTHO05D004488 2.0e-20 102.8 55 90.9
DCAR_018445 Daucus carota HOM05D003908 ORTHO05D004488 7.4e-20 100.9 52 92.3
DCAR_012514 Daucus carota HOM05D003908 ORTHO05D004488 9.7e-20 100.5 52 92.3
Actinidia30711 Actinidia chinensis HOM05D005044 ORTHO05D006799 3.1e-18 95.5 69 73.9
SHI24544 Sapria himalayana HOM05D003908 ORTHO05D000023 2.6e-17 92.4 63 71.4
Sopen12g012850 Solanum pennellii HOM05D003908 ORTHO05D004488 1.4e-13 80.1 58 74.1
CSS0012932 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.8e-11 72.4 35 88.6
Peaxi162Scf01294g00317 Petunia axillaris HOM05D003908 ORTHO05D004488 2.4e-10 69.3 35 88.6
AUR62011951 Chenopodium quinoa HOM05D003908 ORTHO05D004488 3.5e-09 65.5 48 68.8


User provided reference genes

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