Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045042 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 5.9e-83 310.8 158 100.0
CSS0009907 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 1.3e-74 283.1 151 97.4
CSS0014342 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 1.8e-52 209.5 151 79.5
CSS0046209 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 2.5e-49 199.1 158 74.1
Lj3A10G10 Lonicera japonica HOM05D001647 ORTHO05D001191 9.8e-38 160.6 115 74.8
Dinv22746 Davidia involucrata HOM05D001647 ORTHO05D001191 2.2e-37 159.5 143 67.8
Duzib212G0802 Durio zibethinus HOM05D001647 ORTHO05D001191 2.8e-37 159.1 142 64.1
QL01p055435 Quercus lobata HOM05D001647 ORTHO05D017173 6.3e-37 157.9 145 65.5
QL10p050116 Quercus lobata HOM05D001647 ORTHO05D001191 6.3e-37 157.9 145 65.5
CiPaw.02G054100 Carya illinoinensis HOM05D001647 ORTHO05D001191 4.5e-35 151.8 142 62.0
ClCG10G015540 Citrullus lanatus HOM05D001647 ORTHO05D001191 2.3e-34 149.4 146 65.1
Prupe.1G196500 Prunus persica HOM05D001647 ORTHO05D001191 3.3e-33 145.6 135 65.2
Thecc.04G177300 Theobroma cacao HOM05D001647 ORTHO05D001191 3.3e-33 145.6 142 63.4
Atru.chr4.2956 Acer truncatum HOM05D001647 ORTHO05D001191 5.6e-33 144.8 143 62.2
Rhsim02G0081300 Rhododendron simsii HOM05D001647 ORTHO05D001191 5.6e-33 144.8 143 64.3
MD04G1042300 Malus domestica HOM05D001647 ORTHO05D001191 2.8e-32 142.5 136 65.4
Gorai.006G229000 Gossypium raimondii HOM05D001647 ORTHO05D001191 4.7e-32 141.7 142 60.6
Gohir.A09G211500 Gossypium hirsutum HOM05D001647 ORTHO05D001191 6.1e-32 141.4 142 60.6
COL.COLO4_16174 Corchorus olitorius HOM05D001647 ORTHO05D001191 3.0e-31 139.0 145 58.6
Gohir.D09G205000 Gossypium hirsutum HOM05D001647 ORTHO05D001191 1.5e-30 136.7 142 59.2
MELO3C009824.2 Cucumis melo HOM05D001647 ORTHO05D001191 2.6e-30 136.0 142 59.9
Aqoxy6G01582 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 5.7e-30 134.8 143 60.1
Aqoxy6G01579 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 1.3e-29 133.7 143 59.4
AUR62002323 Chenopodium quinoa HOM05D001647 ORTHO05D001191 4.9e-29 131.7 142 57.7
MBI08_g20601_MAGBIO Magnolia biondii HOM05D001647 ORTHO05D001191 4.9e-29 131.7 146 58.9
Lj6C11T4 Lonicera japonica HOM05D001647 ORTHO05D017173 1.8e-28 129.8 132 63.6
Cfa015176 Carpinus fangiana HOM05D001647 ORTHO05D001191 2.4e-28 129.4 157 54.8
Potri.007G129600 Populus trichocarpa HOM05D001647 ORTHO05D001191 3.2e-28 129.0 137 61.3
AUR62023863 Chenopodium quinoa HOM05D001647 ORTHO05D001191 5.4e-28 128.3 142 56.3
Manes.04G043600 Manihot esculenta HOM05D001647 ORTHO05D001191 5.4e-28 128.3 137 58.4
Nn1g09609 Nelumbo nucifera HOM05D001647 ORTHO05D001191 2.0e-27 126.3 139 58.3
Ciclev10020228m.g Citrus clementina HOM05D001647 ORTHO05D001191 2.7e-27 125.9 139 55.4
RcHm_v2.0_Chr4g0406531 Rosa chinensis HOM05D001647 ORTHO05D001191 3.5e-27 125.6 89 76.4
arahy.Tifrunner.gnm1.ann1.0Q1I8G Arachis hypogaea HOM05D001647 ORTHO05D001191 4.6e-27 125.2 142 52.1
VMungo1127G2188 Vigna mungo HOM05D001647 ORTHO05D001191 5.9e-27 124.8 112 61.6
Lalb_Chr03g0026081 Lupinus albus HOM05D001647 ORTHO05D001191 7.8e-27 124.4 142 54.2
Sabra07G0105500 Salix brachista HOM05D001647 ORTHO05D001191 7.8e-27 124.4 89 74.2
CsaV3_3G040890 Cucumis sativus L. HOM05D001647 ORTHO05D001191 1.0e-26 124.0 141 56.7
Cc04_g16720 Coffea canephora HOM05D001647 ORTHO05D001191 1.3e-26 123.6 138 54.3
arahy.Tifrunner.gnm1.ann1.G4MAIF Arachis hypogaea HOM05D001647 ORTHO05D001191 1.7e-26 123.2 142 52.1
Hund03168 Selenicereus undatus HOM05D001647 ORTHO05D017173 8.6e-26 120.9 115 63.5
Cpa.g.sc9.296 Carica papaya HOM05D001647 ORTHO05D001191 1.9e-25 119.8 91 70.3
DCAR_009853 Daucus carota HOM05D001647 ORTHO05D001191 1.9e-25 119.8 144 52.8
THA.LOC104815857 Tarenaya hassleriana HOM05D001647 ORTHO05D001191 1.9e-25 119.8 137 56.2
TWI15G0581 Tripterygium wilfordii HOM05D001647 ORTHO05D001191 2.5e-25 119.4 134 56.7
EL10Ac3g05979 Beta vulgaris HOM05D001647 ORTHO05D001191 5.6e-25 118.2 143 55.2
MSTRG.27406 Avicennia marina HOM05D001647 ORTHO05D001191 9.5e-25 117.5 147 55.8
Lj3g0005963 Lotus japonicus HOM05D001647 ORTHO05D001191 1.2e-24 117.1 140 55.0
Aa31LG5G7750 Aethionema arabicum HOM05D001528 ORTHO05D002760 1.6e-24 116.7 144 52.8
A03p26360 Brassica napus HOM05D001647 ORTHO05D001191 3.6e-24 115.5 136 57.4
Ca_20792_v3 Cicer arietinum L. HOM05D001647 ORTHO05D001191 3.6e-24 115.5 141 55.3
Sc19g0002950 Simmondsia chinensis HOM05D001647 ORTHO05D001191 4.7e-24 115.2 107 66.4
Sed0028231 Sechium edule HOM05D001647 ORTHO05D001191 6.2e-24 114.8 142 56.3
Actinidia34598 Actinidia chinensis HOM05D001647 ORTHO05D017173 8.0e-24 114.4 96 62.5
AL4G21530 Arabidopsis lyrata HOM05D001647 ORTHO05D001191 8.0e-24 114.4 137 56.2
BcaC01g04968 Brassica carinata HOM05D001647 ORTHO05D001191 8.0e-24 114.4 136 58.1
BolC3t15505H Brassica oleracea HOM05D001647 ORTHO05D001191 8.0e-24 114.4 136 58.1
Phvul.011G053900 Phaseolus vulgaris HOM05D001647 ORTHO05D001191 1.8e-23 113.2 87 70.1
Ah.07g202130 Amaranthus hybridus HOM05D001647 ORTHO05D001191 3.1e-23 112.5 85 75.3
CARHR121430 Cardamine hirsuta HOM05D001647 ORTHO05D001191 3.1e-23 112.5 135 54.1
Cc03_g11950 Coffea canephora HOM05D001647 ORTHO05D001191 3.1e-23 112.5 125 56.0
C03p31620 Brassica napus HOM05D001647 ORTHO05D001191 4.0e-23 112.1 136 57.4
PSO732G0352 Papaver somniferum HOM05D000793 ORTHO05D001191 5.2e-23 111.7 141 52.5
Psat7g209920 Pisum sativum HOM05D001647 ORTHO05D001191 5.2e-23 111.7 138 53.6
SGA_v2.0_scaffold221G42702 Striga asiatica HOM05D001647 ORTHO05D001191 6.8e-23 111.3 78 84.6
Sp4g11300 Schrenkiella parvula HOM05D001647 ORTHO05D001191 8.9e-23 110.9 138 52.9
AT2G28480 Arabidopsis thaliana HOM05D001647 ORTHO05D001191 1.5e-22 110.2 139 55.4
FvH4_4g10890 Fragaria vesca HOM05D001647 ORTHO05D001191 3.4e-22 109.0 85 74.1
FAN12G2494 Fragaria x ananassa HOM05D001647 ORTHO05D001191 1.7e-21 106.7 85 71.8
FAN17G2196 Fragaria x ananassa HOM05D001647 ORTHO05D001191 1.7e-21 106.7 85 72.9
ATR0824G265 Amborella trichopoda HOM05D001647 ORTHO05D017173 2.9e-21 105.9 154 50.6
FAN07G0844 Fragaria x ananassa HOM05D001647 ORTHO05D001191 2.9e-21 105.9 85 70.6
Thhalv10016829m.g Eutrema salsugineum HOM05D001647 ORTHO05D001191 3.7e-21 105.5 83 69.9
BcaB01g03105 Brassica carinata HOM05D001647 ORTHO05D001191 6.4e-21 104.8 137 55.5
Migut.D01562 Erythranthe guttata HOM05D001647 ORTHO05D001191 6.4e-21 104.8 122 58.2
SalBow3G2902 Salvia bowleyana HOM05D001647 ORTHO05D001191 1.1e-20 104.0 125 56.8
Medtr4g067300 Medicago truncatula HOM05D001647 ORTHO05D001191 1.9e-20 103.2 147 49.7
C04p22880 Brassica napus HOM05D001647 ORTHO05D001191 3.2e-20 102.4 139 53.2
Lsat_1_v5_gn_1_77501 Lactuca sativa HOM05D001647 ORTHO05D001191 4.1e-20 102.1 160 45.0
Carub.0004s0942 Capsella rubella HOM05D001647 ORTHO05D001191 7.0e-20 101.3 137 54.0
Glyma.12G051900 Glycine max HOM05D001647 ORTHO05D001191 7.0e-20 101.3 88 64.8
Peaxi162Scf00141g00924 Petunia axillaris HOM05D001647 ORTHO05D001191 1.6e-19 100.1 97 61.9
unitig_37.g12021 Utricularia gibba HOM05D001647 ORTHO05D001191 1.0e-18 97.4 96 64.6
ECA248G3160 Erigeron canadensis HOM05D001647 ORTHO05D001191 2.3e-18 96.3 78 74.4
PGSC0003DMG400011786 Solanum tuberosum HOM05D001647 ORTHO05D001191 3.0e-18 95.9 123 54.5
Oeu053823.2 Olea europaea HOM05D001647 ORTHO05D001191 5.0e-18 95.1 93 64.5
BolC4t23784H Brassica oleracea HOM05D001647 ORTHO05D001191 5.6e-17 91.7 139 50.4
Solyc09g005270.3 Solanum lycopersicum HOM05D001647 ORTHO05D001191 7.3e-17 91.3 117 52.1
Rhsim05G0023400 Rhododendron simsii HOM05D010576 ORTHO05D012109 9.5e-17 90.9 145 47.6
TPR.G34241 Trifolium pratense HOM05D001647 ORTHO05D001191 2.1e-16 89.7 140 45.7
CAN.G1002.19 Capsicum annuum HOM05D001647 ORTHO05D001191 8.1e-16 87.8 105 51.4
Eucgr.A00093 Eucalyptus grandis HOM05D001647 ORTHO05D001191 4.0e-15 85.5 104 50.0
PGR083G0602 Punica granatum HOM05D001647 ORTHO05D001191 1.5e-14 83.6 138 44.2
Sopen09g001240 Solanum pennellii HOM05D001647 ORTHO05D001191 1.5e-14 83.6 117 49.6
HanXRQChr01g0023811 Helianthus annuus HOM05D001647 ORTHO05D001191 7.5e-14 81.3 128 47.7
BcaB02g10162 Brassica carinata HOM05D001647 ORTHO05D001191 7.1e-12 74.7 136 45.6
CDE02G4217 Ceratophyllum demersum HOM05D001647 ORTHO05D001191 7.8e-11 71.2 61 72.1
Os01g0958400 Oryza sativa ssp. japonica HOM05D001647 ORTHO05D001191 1.7e-10 70.1 141 42.6
PGSC0003DMG400015335 Solanum tuberosum HOM05D001647 ORTHO05D001191 2.3e-10 69.7 114 43.9
Nitab4.5_0000335g0080 Nicotiana tabacum HOM05D001647 ORTHO05D001191 5.1e-10 68.6 104 47.1
Solyc12g014280.2 Solanum lycopersicum HOM05D001647 ORTHO05D001191 5.1e-10 68.6 122 40.2
Nitab4.5_0000511g0050 Nicotiana tabacum HOM05D001647 ORTHO05D001191 8.6e-10 67.8 46 73.9
Zm00001eb140480 Zea mays HOM05D001647 ORTHO05D001191 2.8e-08 62.8 138 39.9
Cc03_g12360 Coffea canephora HOM05D001647 ORTHO05D001191 1.1e-07 60.8 44 84.1
Sopen12g006070 Solanum pennellii HOM05D001647 ORTHO05D001191 1.4e-07 60.5 122 37.7
GSVIVG01010789001 Vitis vinifera HOM05D001647 ORTHO05D001191 2.3e-07 59.7 44 84.1


User provided reference genes

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