Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.8e-30 135.2 63 100.0
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 3.4e-26 120.9 63 87.3
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 1.1e-24 115.9 63 85.7
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 1.9e-24 115.2 63 85.7
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 2.5e-24 114.8 63 84.1
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 4.2e-24 114.0 63 85.7
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 4.2e-24 114.0 63 85.7
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 7.1e-24 113.2 57 87.7
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 7.1e-24 113.2 57 87.7
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 9.3e-24 112.8 63 81.0
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 1.6e-23 112.1 63 82.5
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 1.6e-23 112.1 63 82.5
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 1.6e-23 112.1 63 84.1
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 1.6e-23 112.1 63 84.1
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 2.1e-23 111.7 62 83.9
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 2.1e-23 111.7 63 82.5
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 2.7e-23 111.3 59 84.7
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 3.5e-23 110.9 63 81.0
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 3.5e-23 110.9 63 79.4
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 4.6e-23 110.5 59 84.7
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 6.0e-23 110.2 63 82.5
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 7.9e-23 109.8 63 82.5
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 1.0e-22 109.4 53 90.6
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 1.3e-22 109.0 60 83.3
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.3e-22 109.0 62 79.0
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.3e-22 109.0 60 85.0
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.8e-22 108.6 59 83.1
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 1.8e-22 108.6 59 84.7
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 1.8e-22 108.6 63 81.0
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 1.8e-22 108.6 63 79.4
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 2.3e-22 108.2 62 80.6
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 2.3e-22 108.2 59 84.7
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 3.0e-22 107.8 64 82.8
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 3.0e-22 107.8 63 81.0
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 3.0e-22 107.8 57 86.0
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 3.0e-22 107.8 63 81.0
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 3.9e-22 107.5 64 82.8
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 3.9e-22 107.5 65 76.9
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 5.1e-22 107.1 63 81.0
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 5.1e-22 107.1 63 81.0
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 5.1e-22 107.1 59 83.1
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 5.1e-22 107.1 59 83.1
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 5.1e-22 107.1 59 83.1
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 5.1e-22 107.1 59 83.1
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 5.1e-22 107.1 61 83.6
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 6.7e-22 106.7 61 83.6
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 8.7e-22 106.3 60 80.0
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 8.7e-22 106.3 60 81.7
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 8.7e-22 106.3 63 79.4
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 8.7e-22 106.3 63 77.8
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 1.1e-21 105.9 58 86.2
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.1e-21 105.9 53 86.8
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.1e-21 105.9 63 79.4
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 1.5e-21 105.5 59 83.1
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 1.5e-21 105.5 63 77.8
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 1.9e-21 105.1 53 90.6
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 1.9e-21 105.1 62 72.6
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 2.5e-21 104.8 58 81.0
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 3.3e-21 104.4 61 78.7
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 3.3e-21 104.4 62 77.4
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 3.3e-21 104.4 62 80.6
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 4.3e-21 104.0 53 90.6
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 5.7e-21 103.6 64 76.6
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 7.4e-21 103.2 59 79.7
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 9.6e-21 102.8 62 79.0
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 9.6e-21 102.8 62 77.4
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 1.3e-20 102.4 65 76.9
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 1.3e-20 102.4 62 75.8
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.3e-20 102.4 62 75.8
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 1.6e-20 102.1 64 71.9
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 2.1e-20 101.7 57 80.7
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 2.8e-20 101.3 62 77.4
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 3.7e-20 100.9 60 75.0
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 4.8e-20 100.5 63 71.4
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 4.8e-20 100.5 59 81.4
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 6.3e-20 100.1 62 75.8
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 8.2e-20 99.8 65 70.8
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 1.1e-19 99.4 58 79.3
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 1.1e-19 99.4 58 79.3
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.1e-19 99.4 59 76.3
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.1e-19 99.4 58 79.3
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.1e-19 99.4 59 76.3
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.1e-19 99.4 62 69.4
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.1e-19 99.4 58 79.3
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.1e-19 99.4 59 76.3
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.1e-19 99.4 58 79.3
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 1.1e-19 99.4 59 78.0
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.4e-19 99.0 62 69.4
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 1.4e-19 99.0 61 75.4
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 1.8e-19 98.6 58 79.3
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 1.8e-19 98.6 53 84.9
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 3.1e-19 97.8 52 82.7
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 5.3e-19 97.1 53 84.9
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 5.3e-19 97.1 53 84.9
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 6.9e-19 96.7 60 68.3
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 9.0e-19 96.3 53 79.2
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.2e-18 95.9 58 70.7
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 1.2e-18 95.9 61 72.1
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 1.5e-18 95.5 58 77.6
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 1.5e-18 95.5 52 78.8
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 2.6e-18 94.7 58 79.3
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 3.4e-18 94.4 65 67.7
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 3.4e-18 94.4 53 79.2
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 7.6e-18 93.2 61 68.9
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.2e-17 91.7 63 68.3
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 2.2e-17 91.7 64 71.9
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 3.8e-17 90.9 58 70.7
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 6.5e-17 90.1 57 68.4
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.1e-16 89.4 64 68.8
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 4.2e-16 87.4 56 75.0
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 1.6e-15 85.5 67 62.7
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.6e-15 85.5 63 61.9
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 2.7e-15 84.7 58 69.0
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 4.6e-15 84.0 54 70.4
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 7.9e-15 83.2 53 71.7
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 1.8e-14 82.0 53 64.2
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 2.3e-14 81.6 54 64.8
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 3.0e-14 81.3 54 68.5
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 3.9e-14 80.9 55 70.9
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 3.9e-14 80.9 58 63.8
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 5.1e-14 80.5 54 64.8
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 8.7e-14 79.7 39 89.7
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 2.8e-12 74.7 54 63.0
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 3.7e-12 74.3 36 88.9
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 7.7e-10 66.6 40 70.0
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 1.2e-07 59.3 45 62.2
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 1.6e-07 58.9 50 56.0
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 2.7e-07 58.2 47 59.6
Medtr5g006260 Medicago truncatula HOM05D006086 ORTHO05D007396 3.6e-07 57.8 81 38.3
Mapoly0080s0018 Marchantia polymorpha HOM05D006086 ORTHO05D007396 1.8e-06 55.5 58 39.7
DCAR_012810 Daucus carota HOM05D002570 ORTHO05D002689 5.1e-06 53.9 61 39.3


User provided reference genes

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