Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045012 Camellia sinensis var. sinensis HOM05D022698 ORTHO05D004160 1.3e-64 249.6 130 100.0
CSS0035089 Camellia sinensis var. sinensis HOM05D022698 ORTHO05D004160 7.0e-58 227.3 130 93.8
CSS0043297 Camellia sinensis var. sinensis HOM05D022698 ORTHO05D004160 2.1e-38 162.5 221 51.1
CSS0032101 Camellia sinensis var. sinensis HOM05D022698 ORTHO05D004160 3.0e-24 115.5 130 57.7
CSS0010226 Camellia sinensis var. sinensis HOM05D022698 ORTHO05D004160 3.9e-24 115.2 129 57.4
Hma1.2p1_1936F.1_g308170 Hydrangea macrophylla HOM05D003700 ORTHO05D004160 1.1e-23 113.6 128 56.2
Hma1.2p1_1936F.1_g308180 Hydrangea macrophylla HOM05D003700 ORTHO05D004160 1.1e-23 113.6 128 56.2
Hma1.2p1_2516F.1_g323665 Hydrangea macrophylla HOM05D003700 ORTHO05D004160 1.1e-23 113.6 128 56.2
Dinv19966 Davidia involucrata HOM05D003700 ORTHO05D004160 3.3e-23 112.1 136 53.7
Dinv38714 Davidia involucrata HOM05D003700 ORTHO05D004160 1.7e-19 99.8 132 52.3
TAR622G0031 Trochodendron aralioides HOM05D003700 ORTHO05D004160 3.8e-19 98.6 92 59.8
Actinidia37626 Actinidia chinensis HOM05D003700 ORTHO05D004160 1.4e-18 96.7 128 50.0
PGSC0003DMG400033045 Solanum tuberosum HOM05D003700 ORTHO05D004160 5.4e-18 94.7 122 49.2
TAR371G1074 Trochodendron aralioides HOM05D003700 ORTHO05D004160 7.1e-18 94.4 82 61.0
Sc12g0006380 Simmondsia chinensis HOM05D003700 ORTHO05D004160 3.5e-17 92.0 116 45.7
Prupe.5G193800 Prunus persica HOM05D003700 ORTHO05D004160 6.0e-17 91.3 125 48.0
Nitab4.5_0011015g0030 Nicotiana tabacum HOM05D003700 ORTHO05D004160 1.0e-16 90.5 104 51.0
Solyc06g069770.3 Solanum lycopersicum HOM05D003700 ORTHO05D004160 1.0e-16 90.5 124 46.8
Sopen06g027060 Solanum pennellii HOM05D003700 ORTHO05D004160 1.3e-16 90.1 124 46.0
FAN08G2213 Fragaria x ananassa HOM05D003700 ORTHO05D004160 1.7e-16 89.7 128 48.4
MD14G1200600 Malus domestica HOM05D003700 ORTHO05D004160 1.7e-16 89.7 125 48.0
Atru.chr11.2689 Acer truncatum HOM05D003700 ORTHO05D004160 5.1e-16 88.2 105 53.3
Haze_07324 Corylus avellana HOM05D003700 ORTHO05D004160 5.1e-16 88.2 130 43.8
Cfa018940 Carpinus fangiana HOM05D003700 ORTHO05D004160 6.6e-16 87.8 131 45.8
Sabra05G0035300 Salix brachista HOM05D003700 ORTHO05D004160 6.6e-16 87.8 127 45.7
Actinidia04888 Actinidia chinensis HOM05D003700 ORTHO05D004160 8.7e-16 87.4 126 47.6
Sed0020544 Sechium edule HOM05D003700 ORTHO05D004160 8.7e-16 87.4 126 47.6
CAN.G628.1 Capsicum annuum HOM05D003700 ORTHO05D004160 1.1e-15 87.0 116 48.3
CiPaw.11G044800 Carya illinoinensis HOM05D003700 ORTHO05D004160 3.3e-15 85.5 128 43.8
PSO832G2691 Papaver somniferum HOM05D003700 ORTHO05D004160 5.6e-15 84.7 104 50.0
AUR62021675 Chenopodium quinoa HOM05D003700 ORTHO05D004160 1.3e-14 83.6 115 48.7
FAN18G4275 Fragaria x ananassa HOM05D003700 ORTHO05D004160 2.1e-14 82.8 126 44.4
Nitab4.5_0007189g0070 Nicotiana tabacum HOM05D003700 ORTHO05D004160 2.1e-14 82.8 126 46.8
CsaV3_1G002330 Cucumis sativus L. HOM05D003700 ORTHO05D004160 2.8e-14 82.4 126 46.0
MELO3C017173.2 Cucumis melo HOM05D003700 ORTHO05D004160 1.4e-13 80.1 110 46.4
CANSAT56G3341 Cannabis sativa HOM05D003700 ORTHO05D004160 2.4e-13 79.3 109 44.0
ECA247G0346 Erigeron canadensis HOM05D003700 ORTHO05D004160 2.4e-13 79.3 115 47.0
Duzib205G1944 Durio zibethinus HOM05D003700 ORTHO05D004160 3.1e-13 79.0 123 43.9
FvH4_5g14920 Fragaria vesca HOM05D003700 ORTHO05D004160 3.1e-13 79.0 126 43.7
FAN04G3111 Fragaria x ananassa HOM05D003700 ORTHO05D004160 5.3e-13 78.2 126 42.9
FAN13G0273 Fragaria x ananassa HOM05D003700 ORTHO05D004160 5.3e-13 78.2 126 42.9
ClCG06G016210 Citrullus lanatus HOM05D003700 ORTHO05D004160 6.9e-13 77.8 131 42.7
AUR62008420 Chenopodium quinoa HOM05D003700 ORTHO05D004160 9.0e-13 77.4 121 45.5
PGR083G2029 Punica granatum HOM05D003700 ORTHO05D004160 1.2e-12 77.0 134 41.0
FAN13G0167 Fragaria x ananassa HOM05D003700 ORTHO05D004160 2.0e-12 76.3 126 42.1
Nn3g17245 Nelumbo nucifera HOM05D003700 ORTHO05D004160 2.0e-12 76.3 124 39.5
RcHm_v2.0_Chr7g0181461 Rosa chinensis HOM05D003700 ORTHO05D004160 2.6e-12 75.9 125 44.0
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 3.4e-12 75.5 82 50.0
TWI81G0244 Tripterygium wilfordii HOM05D003700 ORTHO05D004160 4.4e-12 75.1 125 42.4
SGA_v2.0_scaffold7G04064 Striga asiatica HOM05D003700 ORTHO05D004160 5.8e-12 74.7 117 43.6
Ciclev10022133m.g Citrus clementina HOM05D003700 ORTHO05D004160 9.9e-12 73.9 115 42.6
Lalb_Chr08g0235721 Lupinus albus HOM05D003700 ORTHO05D004160 9.9e-12 73.9 80 55.0
vmacro11460 Vaccinium macrocarpon HOM05D003700 ORTHO05D004160 9.9e-12 73.9 57 61.4
CDE08G0283 Ceratophyllum demersum HOM05D003700 ORTHO05D004160 1.3e-11 73.6 82 45.1
Cc04_g16600 Coffea canephora HOM05D003700 ORTHO05D004160 2.2e-11 72.8 139 40.3
QL10p017042 Quercus lobata HOM05D003700 ORTHO05D004160 3.8e-11 72.0 72 54.2
MSTRG.9629 Avicennia marina HOM05D003700 ORTHO05D004160 6.4e-11 71.2 90 46.7
Sed0006743 Sechium edule HOM05D003700 ORTHO05D004160 6.4e-11 71.2 103 45.6
HanXRQChr04g0107321 Helianthus annuus HOM05D003700 ORTHO05D004160 8.4e-11 70.9 104 45.2
Atru.chr9.273 Acer truncatum HOM05D003700 ORTHO05D004160 1.4e-10 70.1 97 45.4
Gohir.D03G093300 Gossypium hirsutum HOM05D003700 ORTHO05D004160 2.4e-10 69.3 119 42.0
Gorai.003G097200 Gossypium raimondii HOM05D003700 ORTHO05D004160 2.4e-10 69.3 119 42.0
Nn4g23176 Nelumbo nucifera HOM05D003700 ORTHO05D004160 2.4e-10 69.3 41 70.7
Nitab4.5_0001128g0150 Nicotiana tabacum HOM05D003700 ORTHO05D004160 2.4e-10 69.3 71 53.5
THA.LOC104821421 Tarenaya hassleriana HOM05D003700 ORTHO05D004160 2.4e-10 69.3 122 42.6
MD06G1193500 Malus domestica HOM05D003700 ORTHO05D004160 3.2e-10 68.9 44 72.7
Nitab4.5_0006000g0030 Nicotiana tabacum HOM05D003700 ORTHO05D004160 3.2e-10 68.9 125 42.4
PSO013G0046 Papaver somniferum HOM05D003700 ORTHO05D004160 3.2e-10 68.9 104 42.3
Eucgr.B00508 Eucalyptus grandis HOM05D003700 ORTHO05D004160 4.2e-10 68.6 59 57.6
Sabra13G0024600 Salix brachista HOM05D003700 ORTHO05D004160 4.2e-10 68.6 129 39.5
Medtr3g435580 Medicago truncatula HOM05D003700 ORTHO05D004160 5.4e-10 68.2 127 40.2
Gohir.D11G035000 Gossypium hirsutum HOM05D003700 ORTHO05D004160 7.1e-10 67.8 123 39.8
Thecc.03G087800 Theobroma cacao HOM05D003700 ORTHO05D004160 7.1e-10 67.8 123 40.7
Gorai.007G037700 Gossypium raimondii HOM05D003700 ORTHO05D004160 9.3e-10 67.4 114 39.5
Gohir.A11G031331 Gossypium hirsutum HOM05D003700 ORTHO05D004160 1.2e-09 67.0 120 39.2
Lsat_1_v5_gn_1_13920 Lactuca sativa HOM05D003700 ORTHO05D004160 1.2e-09 67.0 129 40.3
Lj5A110T129 Lonicera japonica HOM05D003700 ORTHO05D004160 2.1e-09 66.2 86 51.2
SGA_v2.0_scaffold114G31908 Striga asiatica HOM05D003700 ORTHO05D004160 2.7e-09 65.9 116 43.1
arahy.Tifrunner.gnm1.ann1.4WDU0A Arachis hypogaea HOM05D003700 ORTHO05D004160 3.5e-09 65.5 107 36.4
Gohir.A03G066800 Gossypium hirsutum HOM05D003700 ORTHO05D004160 4.6e-09 65.1 119 40.3
Potri.005G033100 Populus trichocarpa HOM05D003700 ORTHO05D004160 7.8e-09 64.3 146 36.3
Lalb_Chr23g0273811 Lupinus albus HOM05D003700 ORTHO05D004160 1.3e-08 63.5 81 49.4
PGSC0003DMG400019531 Solanum tuberosum HOM05D003700 ORTHO05D004160 1.3e-08 63.5 119 41.2
HPP92_005935 Vanilla planifolia HOM05D003700 ORTHO05D004160 1.3e-08 63.5 41 61.0
Lj4g0000044 Lotus japonicus HOM05D003700 ORTHO05D004160 1.7e-08 63.2 119 42.0
Manes.06G092100 Manihot esculenta HOM05D003700 ORTHO05D004160 2.3e-08 62.8 125 38.4
Oeu047295.1 Olea europaea HOM05D003700 ORTHO05D004160 2.3e-08 62.8 107 41.1
Gohir.A11G031511 Gossypium hirsutum HOM05D003700 ORTHO05D004160 3.0e-08 62.4 77 46.8
Sc04g0002660 Simmondsia chinensis HOM05D003700 ORTHO05D004160 3.0e-08 62.4 127 40.2
EL10Ac5g11021 Beta vulgaris HOM05D003700 ORTHO05D004160 6.6e-08 61.2 123 39.8
A06p29150 Brassica napus HOM05D003700 ORTHO05D004160 8.7e-08 60.8 102 36.3
Peaxi162Scf00013g00333 Petunia axillaris HOM05D003700 ORTHO05D004160 8.7e-08 60.8 115 34.8
SalBow7G0736 Salvia bowleyana HOM05D003700 ORTHO05D004160 8.7e-08 60.8 119 39.5
Solyc03g116020.3 Solanum lycopersicum HOM05D003700 ORTHO05D004160 8.7e-08 60.8 119 40.3
COL.COLO4_32291 Corchorus olitorius HOM05D003700 ORTHO05D004160 1.1e-07 60.5 118 34.7
TPR.G11909 Trifolium pratense HOM05D003700 ORTHO05D004160 1.1e-07 60.5 69 50.7
Potri.013G021800 Populus trichocarpa HOM05D003700 ORTHO05D004160 1.5e-07 60.1 52 50.0
unitig_62.g23549 Utricularia gibba HOM05D003700 ORTHO05D004160 2.5e-07 59.3 37 67.6
Phvul.009G187000 Phaseolus vulgaris HOM05D003700 ORTHO05D004160 3.3e-07 58.9 138 37.0
Lj1g0000196 Lotus japonicus HOM05D003700 ORTHO05D004160 5.6e-07 58.2 128 37.5
Psat5g193120 Pisum sativum HOM05D003700 ORTHO05D004160 5.6e-07 58.2 41 63.4
DCAR_016563 Daucus carota HOM05D003700 ORTHO05D004160 7.3e-07 57.8 116 37.1
HanXRQChr02g0043591 Helianthus annuus HOM05D003700 ORTHO05D004160 7.3e-07 57.8 73 43.8
arahy.Tifrunner.gnm1.ann1.6Q68A3 Arachis hypogaea HOM05D003700 ORTHO05D004160 9.6e-07 57.4 126 32.5
Sopen03g035010 Solanum pennellii HOM05D003700 ORTHO05D004160 1.3e-06 57.0 119 38.7
arahy.Tifrunner.gnm1.ann1.G7C7PJ Arachis hypogaea HOM05D003700 ORTHO05D004160 1.6e-06 56.6 125 36.8
CAN.G837.20 Capsicum annuum HOM05D003700 ORTHO05D004160 1.6e-06 56.6 102 38.2
Aa31LG4G16330 Aethionema arabicum HOM05D003700 ORTHO05D004160 2.1e-06 56.2 120 37.5
ATR1127G116 Amborella trichopoda HOM05D003700 ORTHO05D004160 2.1e-06 56.2 52 48.1
Potri.013G022500 Populus trichocarpa HOM05D003700 ORTHO05D004160 2.1e-06 56.2 117 38.5
SEGI_41222 Sequoiadendron giganteum HOM05D003700 ORTHO05D004160 2.1e-06 56.2 73 42.5
Phvul.003G190000 Phaseolus vulgaris HOM05D003700 ORTHO05D004160 2.8e-06 55.8 110 40.0
BolC3t18700H Brassica oleracea HOM05D003700 ORTHO05D004160 3.6e-06 55.5 92 35.9
BraA06t25863Z Brassica rapa HOM05D003700 ORTHO05D004160 3.6e-06 55.5 102 35.3
A02p42310 Brassica napus HOM05D003700 ORTHO05D004160 4.8e-06 55.1 118 39.8
BraA02t09160Z Brassica rapa HOM05D003700 ORTHO05D004160 4.8e-06 55.1 118 39.8
Carub.0008s2312 Capsella rubella HOM05D003700 ORTHO05D004160 6.2e-06 54.7 102 37.3
COL.COLO4_35537 Corchorus olitorius HOM05D003700 ORTHO05D004160 6.2e-06 54.7 40 55.0
Migut.D01816 Erythranthe guttata HOM05D003700 ORTHO05D004160 6.2e-06 54.7 124 36.3
arahy.Tifrunner.gnm1.ann1.N073K6 Arachis hypogaea HOM05D003700 ORTHO05D004160 8.1e-06 54.3 110 31.8
Hund02648 Selenicereus undatus HOM05D003700 ORTHO05D004160 8.1e-06 54.3 130 35.4


User provided reference genes

Program Settings