Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045004 Camellia sinensis var. sinensis HOM05D063414 ORTHO05D022140 1.8e-96 355.9 181 100.0
CSS0021946 Camellia sinensis var. sinensis HOM05D063414 ORTHO05D022140 1.2e-87 326.6 181 92.3
vmacro12052 Vaccinium macrocarpon HOM05D000191 ORTHO05D000122 3.5e-31 139.0 169 55.6
Dinv05333 Davidia involucrata HOM05D000191 ORTHO05D000122 1.3e-30 137.1 174 48.3
Rhsim06G0179700 Rhododendron simsii HOM05D000191 ORTHO05D000122 1.6e-28 130.2 163 52.8
Actinidia12349 Actinidia chinensis HOM05D000191 ORTHO05D000122 3.1e-27 125.9 174 51.1
PGSC0003DMG400017389 Solanum tuberosum HOM05D000191 ORTHO05D000122 1.2e-18 97.4 180 42.8
Solyc07g045120.2 Solanum lycopersicum HOM05D000191 ORTHO05D000122 9.9e-18 94.4 179 43.6
Rhsim06G0180200 Rhododendron simsii HOM05D000191 ORTHO05D000122 2.2e-17 93.2 121 51.2
Peaxi162Scf00581g00051 Petunia axillaris HOM05D000191 ORTHO05D000122 8.3e-17 91.3 178 42.1
Cc05_g01800 Coffea canephora HOM05D000191 ORTHO05D000122 7.8e-15 84.7 180 36.7
Manes.12G067302 Manihot esculenta HOM05D000191 ORTHO05D000122 1.0e-14 84.3 181 42.5
Oeu056855.1 Olea europaea HOM05D000191 ORTHO05D000122 3.0e-14 82.8 180 40.6
Cc02_g31440 Coffea canephora HOM05D000191 ORTHO05D000122 5.1e-14 82.0 176 37.5
CAN.G1214.4 Capsicum annuum HOM05D000191 ORTHO05D000122 6.6e-14 81.6 188 36.2
Solyc05g016320.2 Solanum lycopersicum HOM05D000191 ORTHO05D000122 1.9e-13 80.1 202 33.7
FAN27G2837 Fragaria x ananassa HOM05D000191 ORTHO05D002546 7.3e-13 78.2 182 37.4
Nitab4.5_0005601g0010 Nicotiana tabacum HOM05D000191 ORTHO05D000122 2.8e-12 76.3 184 35.3
Migut.M00061 Erythranthe guttata HOM05D000191 ORTHO05D000122 3.6e-12 75.9 174 35.6
Ciclev10017948m.g Citrus clementina HOM05D000191 ORTHO05D000122 6.2e-12 75.1 152 38.8
Duzib211G0119 Durio zibethinus HOM05D000191 ORTHO05D000122 1.1e-11 74.3 174 37.4
Prupe.8G004600 Prunus persica HOM05D000191 ORTHO05D000122 1.1e-11 74.3 188 34.0
Nn1g07589 Nelumbo nucifera HOM05D000191 ORTHO05D000122 1.8e-11 73.6 162 33.3
Sopen07g023670 Solanum pennellii HOM05D000191 ORTHO05D000122 1.8e-11 73.6 142 43.7
Gohir.D11G154300 Gossypium hirsutum HOM05D000191 ORTHO05D000122 2.4e-11 73.2 153 37.9
Gorai.007G164400 Gossypium raimondii HOM05D000191 ORTHO05D000122 4.0e-11 72.4 153 37.9
PGR031G2248 Punica granatum HOM05D000191 ORTHO05D000122 4.0e-11 72.4 167 38.9
FAN20G2424 Fragaria x ananassa HOM05D000191 ORTHO05D000122 8.9e-11 71.2 167 37.7
Potri.014G171100 Populus trichocarpa HOM05D000191 ORTHO05D000122 1.2e-10 70.9 159 40.3
Gohir.A11G147400 Gossypium hirsutum HOM05D000191 ORTHO05D000122 2.6e-10 69.7 165 37.0
PGR031G0066 Punica granatum HOM05D000191 ORTHO05D000122 3.4e-10 69.3 166 34.9
GSVIVG01030134001 Vitis vinifera HOM05D000191 ORTHO05D000122 3.4e-10 69.3 54 66.7
Cfa008051 Carpinus fangiana HOM05D000191 ORTHO05D000122 4.4e-10 68.9 174 34.5
Haze_13974 Corylus avellana HOM05D000191 ORTHO05D000122 4.4e-10 68.9 168 36.9
Thecc.01G200800 Theobroma cacao HOM05D000191 ORTHO05D000122 5.8e-10 68.6 206 31.1
Sopen05g013240 Solanum pennellii HOM05D000191 ORTHO05D000122 1.7e-09 67.0 156 34.0
ClCG08G001500 Citrullus lanatus HOM05D000191 ORTHO05D002546 2.9e-09 66.2 162 35.2
Gohir.D07G169400 Gossypium hirsutum HOM05D000191 ORTHO05D000122 2.9e-09 66.2 176 35.8
MD10G1002900 Malus domestica HOM05D000191 ORTHO05D000122 2.9e-09 66.2 188 35.6
Dinv37372 Davidia involucrata HOM05D000191 ORTHO05D000122 3.8e-09 65.9 197 32.0
TWI18G0504 Tripterygium wilfordii HOM05D000191 ORTHO05D000122 4.9e-09 65.5 179 35.2
TAR627G0915 Trochodendron aralioides HOM05D000191 ORTHO05D000122 4.9e-09 65.5 72 54.2
Gorai.001G189500 Gossypium raimondii HOM05D000191 ORTHO05D000122 6.4e-09 65.1 176 35.8
Sed0017218 Sechium edule HOM05D000191 ORTHO05D002546 6.4e-09 65.1 128 35.9
SGA_v2.0_scaffold73G24487 Striga asiatica HOM05D000191 ORTHO05D000122 8.4e-09 64.7 178 35.4
PGSC0003DMG400017704 Solanum tuberosum HOM05D000191 ORTHO05D000122 1.9e-08 63.5 52 65.4
Eucgr.A01382 Eucalyptus grandis HOM05D000191 ORTHO05D000122 2.4e-08 63.2 167 34.7
FvH4_2g00470 Fragaria vesca HOM05D000191 ORTHO05D000122 3.2e-08 62.8 90 45.6
FAN24G1610 Fragaria x ananassa HOM05D000191 ORTHO05D002546 3.2e-08 62.8 90 45.6
RcHm_v2.0_Chr6g0250461 Rosa chinensis HOM05D000191 ORTHO05D000122 3.2e-08 62.8 115 40.0
Lj1A801T71 Lonicera japonica HOM05D000191 ORTHO05D022140 1.6e-07 60.5 54 59.3
MD05G1001700 Malus domestica HOM05D000191 ORTHO05D000122 3.5e-07 59.3 67 53.7
Gohir.A07G162800 Gossypium hirsutum HOM05D000191 ORTHO05D000122 4.6e-07 58.9 178 34.3
DCAR_008753 Daucus carota HOM05D000191 ORTHO05D000122 1.3e-06 57.4 162 30.9
QL10p038817 Quercus lobata HOM05D000191 ORTHO05D000122 2.3e-06 56.6 53 58.5
Atru.chr6.3441 Acer truncatum HOM05D000191 ORTHO05D000122 3.0e-06 56.2 55 56.4
Phvul.009G157700 Phaseolus vulgaris HOM05D000191 ORTHO05D000122 3.0e-06 56.2 53 62.3
Atru.chr6.3440 Acer truncatum HOM05D000191 ORTHO05D000122 3.9e-06 55.8 54 55.6
Eucgr.A01384 Eucalyptus grandis HOM05D000191 ORTHO05D000122 3.9e-06 55.8 72 47.2
CsaV3_5G039600 Cucumis sativus L. HOM05D000191 ORTHO05D002546 5.1e-06 55.5 58 51.7
Medtr3g097310 Medicago truncatula HOM05D000191 ORTHO05D000122 5.1e-06 55.5 53 58.5
Prupe.4G281300 Prunus persica HOM05D000191 ORTHO05D000122 5.1e-06 55.5 68 47.1
Sed0018766 Sechium edule HOM05D002356 ORTHO05D000122 8.7e-06 54.7 146 32.2


User provided reference genes

Program Settings