Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045002 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 1.3e-66 256.1 122 100.0
CSS0022165 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 8.3e-37 157.1 88 85.2
CSS0043406 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 3.5e-35 151.8 88 80.7
CSS0022469 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 4.6e-35 151.4 92 80.4
CSS0029114 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 7.3e-33 144.1 80 86.2
vmacro15570 Vaccinium macrocarpon HOM05D001170 ORTHO05D002759 7.3e-33 144.1 79 83.5
CSS0016276 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 1.2e-32 143.3 80 82.5
Actinidia28998 Actinidia chinensis HOM05D001170 ORTHO05D002759 3.1e-31 138.7 80 81.2
Dinv30210 Davidia involucrata HOM05D001170 ORTHO05D002759 6.8e-31 137.5 79 82.3
Dinv11584 Davidia involucrata HOM05D001170 ORTHO05D002759 4.4e-30 134.8 79 81.0
Rhsim02G0062300 Rhododendron simsii HOM05D001170 ORTHO05D002759 9.9e-30 133.7 79 77.2
QL07p015408 Quercus lobata HOM05D001170 ORTHO05D002759 1.4e-28 129.8 88 65.9
TAR636G1119 Trochodendron aralioides HOM05D001170 ORTHO05D002759 3.2e-28 128.6 78 75.6
Manes.04G117000 Manihot esculenta HOM05D001170 ORTHO05D002759 4.2e-28 128.3 76 78.9
PSO210G6149 Papaver somniferum HOM05D001170 ORTHO05D002759 1.2e-27 126.7 78 75.6
DCAR_021328 Daucus carota HOM05D001170 ORTHO05D002759 1.6e-27 126.3 71 78.9
CiPaw.01G244000 Carya illinoinensis HOM05D001170 ORTHO05D002759 2.1e-27 125.9 81 70.4
Thecc.06G074000 Theobroma cacao HOM05D001170 ORTHO05D002759 2.1e-27 125.9 88 65.9
ECA234G3104 Erigeron canadensis HOM05D001170 ORTHO05D002759 2.7e-27 125.6 78 74.4
Gorai.011G080700 Gossypium raimondii HOM05D001170 ORTHO05D002759 4.6e-27 124.8 88 64.8
GSVIVG01017244001 Vitis vinifera HOM05D001170 ORTHO05D002759 4.6e-27 124.8 78 74.4
Gohir.A10G076500 Gossypium hirsutum HOM05D001170 ORTHO05D002759 6.0e-27 124.4 86 66.3
HanXRQChr16g0504211 Helianthus annuus HOM05D001170 ORTHO05D002759 7.8e-27 124.0 78 73.1
CSS0032119 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 1.0e-26 123.6 81 74.1
Lj5A68T68 Lonicera japonica HOM05D001170 ORTHO05D002759 1.0e-26 123.6 88 65.9
TWI18G1279 Tripterygium wilfordii HOM05D001170 ORTHO05D002759 1.0e-26 123.6 86 66.3
TAR383G0630 Trochodendron aralioides HOM05D001170 ORTHO05D002759 1.0e-26 123.6 79 75.9
MSTRG.334 Avicennia marina HOM05D001170 ORTHO05D002759 1.3e-26 123.2 79 72.2
Cfa010927 Carpinus fangiana HOM05D001170 ORTHO05D002759 1.7e-26 122.9 85 64.7
Cc04_g03980 Coffea canephora HOM05D001170 ORTHO05D002759 2.3e-26 122.5 79 74.7
Haze_03014 Corylus avellana HOM05D001170 ORTHO05D002759 3.0e-26 122.1 85 64.7
Haze_03021 Corylus avellana HOM05D001170 ORTHO05D002759 3.0e-26 122.1 85 64.7
Migut.B01277 Erythranthe guttata HOM05D001170 ORTHO05D002759 3.0e-26 122.1 79 73.4
Gohir.D10G074800 Gossypium hirsutum HOM05D001170 ORTHO05D002759 3.0e-26 122.1 88 63.6
COL.COLO4_12888 Corchorus olitorius HOM05D001170 ORTHO05D002759 3.9e-26 121.7 86 65.1
Prupe.3G079000 Prunus persica HOM05D001170 ORTHO05D002759 3.9e-26 121.7 79 70.9
Prupe.8G067300 Prunus persica HOM05D001170 ORTHO05D002759 5.1e-26 121.3 86 65.1
CsaV3_4G001380 Cucumis sativus L. HOM05D001170 ORTHO05D002759 6.6e-26 120.9 72 75.0
Hma1.2p1_0515F.1_g170270 Hydrangea macrophylla HOM05D001170 ORTHO05D002759 6.6e-26 120.9 93 65.6
Cc05_g02070 Coffea canephora HOM05D001170 ORTHO05D002759 8.7e-26 120.6 86 70.9
HanXRQChr10g0304481 Helianthus annuus HOM05D001170 ORTHO05D002759 8.7e-26 120.6 78 71.8
Sc09g0002660 Simmondsia chinensis HOM05D001170 ORTHO05D002759 8.7e-26 120.6 86 64.0
MELO3C017902.2 Cucumis melo HOM05D001170 ORTHO05D002759 1.1e-25 120.2 72 75.0
Solyc06g067960.3 Solanum lycopersicum HOM05D001170 ORTHO05D002759 1.1e-25 120.2 70 78.6
Sopen06g025240 Solanum pennellii HOM05D001170 ORTHO05D002759 1.1e-25 120.2 70 78.6
Oeu033463.1 Olea europaea HOM05D001170 ORTHO05D002759 1.5e-25 119.8 79 70.9
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 1.5e-25 119.8 76 73.7
Eucgr.D00992 Eucalyptus grandis HOM05D001170 ORTHO05D002759 1.9e-25 119.4 79 69.6
PSO170G1001 Papaver somniferum HOM05D001170 ORTHO05D002759 1.9e-25 119.4 83 69.9
Atru.chr1.3105 Acer truncatum HOM05D001170 ORTHO05D002759 2.5e-25 119.0 78 69.2
PSO407G0198 Papaver somniferum HOM05D001170 ORTHO05D002759 2.5e-25 119.0 83 69.9
PGR102G1290 Punica granatum HOM05D001170 ORTHO05D002759 2.5e-25 119.0 86 62.8
ClCG10G010110 Citrullus lanatus HOM05D001170 ORTHO05D002759 3.3e-25 118.6 72 73.6
Duzib192G0175 Durio zibethinus HOM05D001170 ORTHO05D002759 3.3e-25 118.6 87 62.1
Glyma.13G363100 Glycine max HOM05D001170 ORTHO05D002759 3.3e-25 118.6 72 72.2
Manes.11G052500 Manihot esculenta HOM05D001170 ORTHO05D002759 3.3e-25 118.6 70 78.6
PGSC0003DMG401028515 Solanum tuberosum HOM05D001170 ORTHO05D002759 3.3e-25 118.6 70 77.1
SalBow5G2628 Salvia bowleyana HOM05D001170 ORTHO05D002759 4.3e-25 118.2 79 68.4
CAN.G395.44 Capsicum annuum HOM05D001170 ORTHO05D002759 5.6e-25 117.9 68 79.4
Lsat_1_v5_gn_1_37260 Lactuca sativa HOM05D001170 ORTHO05D002759 9.6e-25 117.1 71 76.1
Nitab4.5_0000620g0090 Nicotiana tabacum HOM05D001170 ORTHO05D002759 9.6e-25 117.1 76 72.4
Lsat_1_v5_gn_6_117141 Lactuca sativa HOM05D001170 ORTHO05D002759 1.3e-24 116.7 78 65.4
Peaxi162Scf00207g00075 Petunia axillaris HOM05D000347 ORTHO05D002759 1.6e-24 116.3 76 72.4
TWI12G0603 Tripterygium wilfordii HOM05D001170 ORTHO05D002759 1.6e-24 116.3 74 68.9
Lj3g0006687 Lotus japonicus HOM05D001170 ORTHO05D002759 2.1e-24 115.9 76 72.4
MD17G1204000 Malus domestica HOM05D001170 ORTHO05D002759 2.1e-24 115.9 78 67.9
TPR.G37160 Trifolium pratense HOM05D001170 ORTHO05D002759 3.6e-24 115.2 72 72.2
Psat5g300480 Pisum sativum HOM05D001170 ORTHO05D002759 4.8e-24 114.8 72 70.8
Ca_01086_v3 Cicer arietinum L. HOM05D001170 ORTHO05D002759 6.2e-24 114.4 72 69.4
Eucgr.D00987 Eucalyptus grandis HOM05D001170 ORTHO05D002759 6.2e-24 114.4 70 72.9
Ah.05g170000 Amaranthus hybridus HOM05D001170 ORTHO05D002759 1.1e-23 113.6 69 72.5
EL10Ac1g01218 Beta vulgaris HOM05D001170 ORTHO05D002759 1.1e-23 113.6 69 72.5
Sed0018385 Sechium edule HOM05D001170 ORTHO05D002759 1.1e-23 113.6 88 60.2
Glyma.08G209900 Glycine max HOM05D001170 ORTHO05D002759 1.4e-23 113.2 68 73.5
AUR62038520 Chenopodium quinoa HOM05D001170 ORTHO05D002759 2.4e-23 112.5 85 63.5
MBI01_g11878_MAGBIO Magnolia biondii HOM05D001170 ORTHO05D002759 2.4e-23 112.5 77 67.5
SGA_v2.0_scaffold39G15188 Striga asiatica HOM05D001170 ORTHO05D002759 2.4e-23 112.5 78 65.4
Ciclev10026629m.g Citrus clementina HOM05D001170 ORTHO05D002759 3.1e-23 112.1 78 65.4
TWI12G0482 Tripterygium wilfordii HOM05D001170 ORTHO05D002759 5.3e-23 111.3 76 64.5
AUR62027755 Chenopodium quinoa HOM05D001170 ORTHO05D002759 6.9e-23 110.9 85 62.4
Lalb_Chr22g0351021 Lupinus albus HOM05D001170 ORTHO05D002759 6.9e-23 110.9 72 69.4
MBI04_g29831_MAGBIO Magnolia biondii HOM05D001170 ORTHO05D009038 6.9e-23 110.9 79 64.6
RcHm_v2.0_Chr2g0136741 Rosa chinensis HOM05D001170 ORTHO05D002759 9.0e-23 110.5 78 66.7
VMungo0331G1315 Vigna mungo HOM05D001170 ORTHO05D002759 9.0e-23 110.5 68 72.1
FAN05G3026 Fragaria x ananassa HOM05D001170 ORTHO05D002759 2.0e-22 109.4 106 54.7
Medtr2g103130 Medicago truncatula HOM05D001170 ORTHO05D002759 2.0e-22 109.4 75 65.3
THA.LOC104815538 Tarenaya hassleriana HOM05D001170 ORTHO05D002759 2.0e-22 109.4 78 65.4
FvH4_6g30390 Fragaria vesca HOM05D001170 ORTHO05D002759 2.6e-22 109.0 78 65.4
FAN09G3438 Fragaria x ananassa HOM05D001170 ORTHO05D002759 2.6e-22 109.0 78 65.4
FAN14G1569 Fragaria x ananassa HOM05D001170 ORTHO05D002759 2.6e-22 109.0 78 65.4
unitig_26.g9275 Utricularia gibba HOM05D001170 ORTHO05D002759 2.6e-22 109.0 79 58.2
ECA246G2008 Erigeron canadensis HOM05D001170 ORTHO05D002759 9.9e-22 107.1 78 60.3
THA.LOC104818039 Tarenaya hassleriana HOM05D001170 ORTHO05D002759 1.3e-21 106.7 88 56.8
CANSAT64G0395 Cannabis sativa HOM05D001170 ORTHO05D002759 1.7e-21 106.3 80 63.8
FAN02G4334 Fragaria x ananassa HOM05D001170 ORTHO05D002759 1.7e-21 106.3 78 64.1
Glyma.07G032600 Glycine max HOM05D001170 ORTHO05D002759 2.9e-21 105.5 68 67.6
BraA05t22199Z Brassica rapa HOM05D001170 ORTHO05D002759 4.9e-21 104.8 80 62.5
Nn7g37528 Nelumbo nucifera HOM05D001170 ORTHO05D002759 6.4e-21 104.4 83 60.2
Lj3g0003704 Lotus japonicus HOM05D001170 ORTHO05D002759 8.4e-21 104.0 69 68.1
Phvul.010G153500 Phaseolus vulgaris HOM05D001170 ORTHO05D002759 1.1e-20 103.6 69 66.7
A05p33760 Brassica napus HOM05D001170 ORTHO05D002759 1.4e-20 103.2 80 61.2
Potri.003G060600 Populus trichocarpa HOM05D001170 ORTHO05D002759 1.9e-20 102.8 81 55.6
Thhalv10021647m.g Eutrema salsugineum HOM05D001170 ORTHO05D002759 4.2e-20 101.7 80 61.2
Nn3g19222 Nelumbo nucifera HOM05D002802 ORTHO05D003166 5.4e-20 101.3 70 70.0
Sp3g13960 Schrenkiella parvula HOM05D001170 ORTHO05D002759 5.4e-20 101.3 91 56.0
ATR0767G165 Amborella trichopoda HOM05D001170 ORTHO05D002759 7.1e-20 100.9 68 66.2
C05p50770 Brassica napus HOM05D001170 ORTHO05D002759 9.3e-20 100.5 81 60.5
AT3G15660 Arabidopsis thaliana HOM05D001170 ORTHO05D002759 1.2e-19 100.1 80 60.0
BcaB04g20909 Brassica carinata HOM05D001170 ORTHO05D002759 1.2e-19 100.1 80 60.0
CSS0038997 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 1.2e-19 100.1 80 62.5
Carub.0003s1541 Capsella rubella HOM05D001170 ORTHO05D002759 1.2e-19 100.1 80 60.0
Sabra03G0034800 Salix brachista HOM05D001170 ORTHO05D002759 1.2e-19 100.1 84 54.8
Aa31LG8G2860 Aethionema arabicum HOM05D001170 ORTHO05D002759 1.6e-19 99.8 80 60.0
CDE01G0177 Ceratophyllum demersum HOM05D001170 ORTHO05D002759 1.6e-19 99.8 71 67.6
AL3G28320 Arabidopsis lyrata HOM05D001170 ORTHO05D002759 2.1e-19 99.4 80 60.0
CARHR090750 Cardamine hirsuta HOM05D001170 ORTHO05D002759 4.6e-19 98.2 71 66.2
BcaC09g48547 Brassica carinata HOM05D001170 ORTHO05D002759 3.9e-18 95.1 77 57.1
A01p38430 Brassica napus HOM05D001170 ORTHO05D002759 3.9e-18 95.1 77 57.1
BolC1t04829H Brassica oleracea HOM05D001170 ORTHO05D002759 3.9e-18 95.1 77 57.1
BraA01t03893Z Brassica rapa HOM05D001170 ORTHO05D002759 3.9e-18 95.1 77 57.1
HPP92_006344 Vanilla planifolia HOM05D001170 ORTHO05D002759 6.6e-18 94.4 67 59.7
C01p48740 Brassica napus HOM05D001170 ORTHO05D002759 1.1e-17 93.6 71 60.6
SHI32413 Sapria himalayana HOM05D001170 ORTHO05D002759 1.1e-17 93.6 81 55.6
Aqoxy1G03999 Aquilegia oxysepala HOM05D001170 ORTHO05D002759 1.9e-17 92.8 77 55.8
Aqoxy1G02463 Aquilegia oxysepala HOM05D001170 ORTHO05D002759 7.3e-17 90.9 77 54.5
Os01g0530400 Oryza sativa ssp. japonica HOM05D001170 ORTHO05D002759 7.3e-17 90.9 66 63.6
ATR0724G012 Amborella trichopoda HOM05D001170 ORTHO05D002759 1.4e-15 86.7 75 52.0
Nitab4.5_0003512g0090 Nicotiana tabacum HOM05D001170 ORTHO05D002759 5.3e-15 84.7 57 70.2
Zm00001eb336840 Zea mays HOM05D001170 ORTHO05D002759 5.3e-15 84.7 77 53.2
Os01g0174900 Oryza sativa ssp. japonica HOM05D001170 ORTHO05D002759 1.2e-14 83.6 66 59.1
Mapoly0037s0022 Marchantia polymorpha HOM05D001170 ORTHO05D002759 2.6e-14 82.4 64 51.6
arahy.Tifrunner.gnm1.ann1.18IZSC Arachis hypogaea HOM05D001170 ORTHO05D002759 4.5e-14 81.6 55 65.5
arahy.Tifrunner.gnm1.ann1.5F4UJS Arachis hypogaea HOM05D001170 ORTHO05D002759 4.5e-14 81.6 55 65.5
ECA248G2451 Erigeron canadensis HOM05D001170 ORTHO05D002666 9.9e-14 80.5 57 66.7
Zm00001eb424600 Zea mays HOM05D001170 ORTHO05D002759 2.2e-13 79.3 76 46.1
Zm00001eb319160 Zea mays HOM05D001170 ORTHO05D002759 1.4e-12 76.6 76 46.1
Pp3c3_2430 Physcomitrium patens HOM05D001170 ORTHO05D002759 1.2e-11 73.6 80 42.5
SMO340G0324 Selaginella moellendorffii HOM05D001170 ORTHO05D002759 2.7e-11 72.4 60 48.3
AagrBONN_evm.TU.Sc2ySwM_362.1014 Anthoceros agrestis HOM05D001170 ORTHO05D002759 6.0e-11 71.2 77 39.0
Pp3c26_14030 Physcomitrium patens HOM05D001170 ORTHO05D002759 1.0e-10 70.5 73 42.5
TPR.G36142 Trifolium pratense HOM05D001170 ORTHO05D002759 8.7e-10 67.4 38 81.6
Cpa.g.sc10.223 Carica papaya HOM05D001170 ORTHO05D002759 2.1e-08 62.8 34 79.4
VMungo1215G2316 Vigna mungo HOM05D017790 ORTHO05D002759 1.2e-06 57.0 47 59.6
HanXRQChr04g0124081 Helianthus annuus HOM05D001170 ORTHO05D006602 7.6e-06 54.3 46 50.0


User provided reference genes

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