Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 2.4e-109 399.4 299 100.0
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 8.4e-107 391.0 299 99.3
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 2.8e-94 349.4 306 77.1
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 1.2e-84 317.4 314 66.6
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 1.0e-83 314.3 341 67.4
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 1.7e-83 313.5 300 72.0
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 1.4e-82 310.5 299 71.9
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 5.5e-82 308.5 298 68.1
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 3.6e-81 305.8 300 69.3
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 2.3e-80 303.1 301 69.4
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 3.9e-80 302.4 307 68.4
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 3.9e-80 302.4 302 64.6
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 1.1e-79 300.8 299 67.9
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 1.1e-79 300.8 309 67.0
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.5e-79 300.4 276 76.1
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 2.0e-79 300.1 301 63.1
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 2.0e-79 300.1 302 64.2
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 2.6e-79 299.7 300 67.0
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 3.3e-79 299.3 299 80.3
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 1.3e-78 297.4 302 70.2
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 1.7e-78 297.0 306 71.9
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 3.7e-78 295.8 316 64.9
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 3.7e-78 295.8 306 71.6
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 4.8e-78 295.4 308 77.9
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 8.2e-78 294.7 304 69.7
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 1.8e-77 293.5 299 69.2
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.8e-77 293.5 306 68.3
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 5.3e-77 292.0 300 65.7
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 7.0e-77 291.6 304 63.5
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.5e-76 290.4 303 78.2
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 2.0e-76 290.0 273 69.6
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 3.5e-76 289.3 300 65.3
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 1.3e-75 287.3 302 60.9
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.3e-75 287.3 298 78.5
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 1.3e-75 287.3 305 58.0
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 2.9e-75 286.2 303 54.5
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 6.5e-75 285.0 302 74.8
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 6.5e-75 285.0 303 63.4
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 1.9e-74 283.5 305 66.9
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 3.2e-74 282.7 305 63.0
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 4.2e-74 282.3 305 63.9
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 9.4e-74 281.2 303 65.3
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 8.0e-73 278.1 305 62.0
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 1.8e-72 276.9 318 65.4
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 1.8e-72 276.9 301 57.8
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 3.0e-72 276.2 295 63.7
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 3.9e-72 275.8 309 61.2
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 5.2e-72 275.4 298 54.7
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 6.7e-72 275.0 332 68.1
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 1.5e-71 273.9 293 79.5
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 1.5e-71 273.9 302 77.8
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 1.5e-71 273.9 302 77.8
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 1.5e-71 273.9 300 53.3
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 2.0e-71 273.5 298 58.7
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 2.0e-71 273.5 301 64.5
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 2.6e-71 273.1 313 52.1
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 5.7e-71 271.9 306 58.5
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 5.7e-71 271.9 300 62.7
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 9.7e-71 271.2 309 57.6
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 1.7e-70 270.4 299 59.2
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 4.8e-70 268.9 305 56.7
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.8e-69 266.9 306 73.9
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 5.3e-69 265.4 306 57.2
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 7.0e-69 265.0 298 58.4
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 5.9e-68 261.9 295 68.8
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 5.9e-68 261.9 306 58.5
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 7.7e-68 261.5 301 66.8
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 1.0e-67 261.2 305 75.4
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 1.7e-67 260.4 300 72.7
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 3.8e-67 259.2 268 55.2
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 6.5e-67 258.5 298 51.0
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 1.2e-65 254.2 307 71.7
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 2.7e-65 253.1 301 51.8
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 6.1e-65 251.9 247 69.6
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 1.4e-64 250.8 302 61.6
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 3.0e-64 249.6 307 74.9
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 5.2e-64 248.8 310 70.3
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 8.8e-64 248.1 312 69.9
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 8.8e-64 248.1 304 65.1
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.2e-63 247.7 303 49.5
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 2.0e-63 246.9 302 59.9
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 2.0e-63 246.9 303 49.2
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 3.3e-63 246.1 302 71.5
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 1.3e-62 244.2 195 67.7
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 2.8e-62 243.0 299 49.2
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 1.4e-61 240.7 343 59.8
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 9.1e-61 238.0 330 55.5
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 1.6e-60 237.3 307 55.7
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 1.3e-59 234.2 289 55.0
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 1.7e-59 233.8 303 58.1
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 2.9e-59 233.0 294 74.5
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 3.2e-58 229.6 302 60.3
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 3.2e-58 229.6 302 60.3
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 3.2e-58 229.6 302 60.3
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 4.2e-58 229.2 294 53.4
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 7.2e-58 228.4 275 62.9
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 9.4e-58 228.0 302 55.0
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 9.4e-58 228.0 302 55.0
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.2e-57 227.6 171 68.4
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 2.7e-57 226.5 362 60.2
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 8.0e-57 224.9 302 63.9
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.2e-55 221.1 304 68.1
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 2.0e-55 220.3 291 53.6
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 2.8e-54 216.5 273 72.5
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 3.7e-54 216.1 341 51.0
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 2.4e-53 213.4 301 57.1
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 3.5e-52 209.5 324 56.5
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 3.7e-46 189.5 189 53.4
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.9e-38 163.3 158 75.3
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 3.2e-37 159.8 180 49.4
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 4.3e-34 149.4 155 78.1
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 8.0e-33 145.2 189 47.1
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 1.1e-32 144.8 104 70.2
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.1e-29 134.8 180 42.8
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 6.0e-28 129.0 120 55.8
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.5e-26 124.4 104 63.5
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 1.5e-23 114.4 137 48.2
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 2.2e-22 110.5 226 36.7
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 1.0e-19 101.7 129 58.1
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 2.8e-17 93.6 136 50.7
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 1.4e-16 91.3 122 52.5
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.2e-15 88.2 48 83.3
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 2.9e-14 83.6 53 81.1
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 8.4e-14 82.0 51 72.5
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 1.1e-13 81.6 51 72.5
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 2.3e-11 73.9 46 71.7
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 3.9e-11 73.2 54 68.5
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 4.3e-10 69.7 43 72.1
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 4.3e-10 69.7 43 72.1
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 3.1e-08 63.5 86 45.3
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 2.0e-07 60.8 29 93.1
MBI18_g10370_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 5.8e-07 59.3 58 60.3
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.3e-06 58.2 29 89.7
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 3.8e-06 56.6 49 55.1
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 8.4e-06 55.5 49 53.1
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 8.4e-06 55.5 51 51.0
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 8.4e-06 55.5 45 57.8


User provided reference genes

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