Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 7.5e-71 270.4 135 100.0
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 5.0e-67 257.7 134 97.8
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.7e-43 179.5 128 71.1
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 5.1e-43 177.9 131 71.8
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.9e-42 176.0 113 79.6
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.1e-41 172.6 112 79.5
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 4.0e-40 168.3 129 69.0
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.2e-39 166.8 113 75.2
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 7.6e-39 164.1 112 74.1
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 2.9e-38 162.2 112 74.1
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 8.4e-38 160.6 124 66.1
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 9.2e-37 157.1 128 61.7
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.0e-35 153.7 113 68.1
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 3.0e-35 152.1 126 61.1
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 3.9e-35 151.8 113 69.0
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 5.1e-35 151.4 110 68.2
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 6.6e-35 151.0 113 67.3
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 6.6e-35 151.0 113 65.5
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 8.6e-35 150.6 113 68.1
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 8.6e-35 150.6 112 68.8
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 1.5e-34 149.8 110 71.8
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 1.5e-34 149.8 112 68.8
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 2.5e-34 149.1 113 67.3
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 2.5e-34 149.1 113 68.1
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 2.5e-34 149.1 115 66.1
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 9.6e-34 147.1 114 67.5
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 1.2e-33 146.7 108 66.7
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 3.6e-33 145.2 110 69.1
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 3.6e-33 145.2 110 69.1
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 3.6e-33 145.2 113 69.0
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 4.7e-33 144.8 113 67.3
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 2.4e-32 142.5 112 66.1
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 3.1e-32 142.1 98 73.5
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 3.4e-31 138.7 113 64.6
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 4.4e-31 138.3 112 65.2
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 4.4e-31 138.3 113 64.6
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 5.8e-31 137.9 113 67.3
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 9.9e-31 137.1 82 81.7
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 1.3e-30 136.7 110 60.0
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 1.7e-30 136.3 108 65.7
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 2.2e-30 136.0 112 60.7
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 2.9e-30 135.6 89 75.3
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.9e-29 132.9 114 62.3
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.9e-29 132.9 112 59.8
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.9e-29 132.9 112 59.8
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 2.4e-29 132.5 105 63.8
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 2.4e-29 132.5 113 59.3
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 3.2e-29 132.1 96 68.8
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 4.2e-29 131.7 112 61.6
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 4.2e-29 131.7 116 61.2
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 7.1e-29 131.0 93 66.7
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 9.3e-29 130.6 113 61.1
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 9.3e-29 130.6 131 53.4
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 1.6e-28 129.8 111 64.0
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 3.5e-28 128.6 111 63.1
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 1.0e-27 127.1 109 56.9
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 1.0e-27 127.1 114 62.3
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 1.3e-27 126.7 113 58.4
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 1.3e-27 126.7 100 65.0
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 1.3e-27 126.7 89 64.0
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 1.7e-27 126.3 112 57.1
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 1.7e-27 126.3 112 57.1
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 2.3e-27 125.9 103 64.1
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 5.1e-27 124.8 122 59.8
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 1.9e-26 122.9 99 60.6
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 3.3e-26 122.1 113 59.3
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 3.3e-26 122.1 141 52.5
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 4.3e-26 121.7 126 57.1
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 5.6e-26 121.3 94 66.0
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 9.6e-26 120.6 85 65.9
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 9.6e-26 120.6 141 51.8
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 1.3e-25 120.2 94 67.0
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 1.6e-25 119.8 137 51.8
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 2.1e-25 119.4 85 64.7
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 2.1e-25 119.4 93 62.4
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 2.8e-25 119.0 83 72.3
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 2.8e-25 119.0 90 66.7
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 4.8e-25 118.2 80 76.2
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 6.2e-25 117.9 112 51.8
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 8.1e-25 117.5 117 59.0
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 1.4e-24 116.7 120 55.0
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 3.1e-24 115.5 115 53.9
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 6.9e-24 114.4 59 94.9
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 9.0e-24 114.0 86 67.4
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 1.2e-23 113.6 100 61.0
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 1.2e-23 113.6 94 62.8
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 1.2e-23 113.6 108 56.5
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 1.5e-23 113.2 86 65.1
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 2.0e-23 112.8 77 68.8
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 4.5e-23 111.7 94 58.5
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 4.5e-23 111.7 86 65.1
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 5.8e-23 111.3 94 58.5
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 5.8e-23 111.3 94 58.5
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 5.8e-23 111.3 94 58.5
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 5.8e-23 111.3 111 53.2
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 5.8e-23 111.3 80 68.8
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 7.6e-23 110.9 80 67.5
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 9.9e-23 110.5 78 69.2
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 1.3e-22 110.2 73 71.2
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.7e-22 109.8 96 62.5
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 1.7e-22 109.8 61 82.0
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 2.9e-22 109.0 93 58.1
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 3.8e-22 108.6 102 52.9
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 4.9e-22 108.2 91 67.0
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 6.4e-22 107.8 96 59.4
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 6.4e-22 107.8 83 68.7
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 1.4e-21 106.7 94 58.5
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.4e-21 106.7 94 58.5
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.4e-21 106.7 94 58.5
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 1.4e-21 106.7 73 68.5
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 1.9e-21 106.3 74 71.6
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 2.4e-21 105.9 103 57.3
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.2e-21 105.1 94 57.4
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.2e-21 105.1 94 57.4
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 5.4e-21 104.8 107 52.3
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 1.0e-19 100.5 87 59.8
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 2.3e-19 99.4 87 59.8
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 3.0e-19 99.0 106 52.8
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 1.1e-18 97.1 106 51.9
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 2.8e-17 92.4 60 78.3
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 3.4e-15 85.5 124 42.7
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 2.2e-14 82.8 65 60.0
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 1.4e-13 80.1 52 73.1
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 5.5e-13 78.2 80 57.5
CSS0038825 Camellia sinensis var. sinensis HOM05D024299 ORTHO05D109017 6.7e-11 71.2 53 67.9
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 6.7e-11 71.2 82 48.8
CSS0028323 Camellia sinensis var. sinensis HOM05D024299 ORTHO05D110977 1.1e-10 70.5 53 67.9
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 3.3e-10 68.9 47 70.2
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 3.3e-10 68.9 47 70.2
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.3e-10 68.6 104 49.0
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.8e-08 63.2 76 55.3
FAN23G0109 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.0e-08 62.0 73 56.2
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 1.2e-07 60.5 67 56.7
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.5e-07 60.1 67 58.2


User provided reference genes

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