Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044993 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D033939 1.2e-36 156.0 77 100.0
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 1.4e-18 95.9 82 63.4
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 1.6e-17 92.4 82 61.0
CSS0044154 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 2.7e-17 91.7 74 64.9
Actinidia12002 Actinidia chinensis HOM05D003561 ORTHO05D004351 2.3e-16 88.6 82 57.3
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 2.5e-15 85.1 83 57.8
AUR62027366 Chenopodium quinoa HOM05D003561 ORTHO05D004351 4.3e-15 84.3 87 55.2
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 5.7e-15 84.0 82 54.9
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 5.7e-15 84.0 82 57.3
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 5.7e-15 84.0 82 57.3
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 5.7e-15 84.0 82 57.3
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 5.7e-15 84.0 82 54.9
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 5.7e-15 84.0 82 54.9
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 7.4e-15 83.6 82 57.3
Cfa004087 Carpinus fangiana HOM05D003561 ORTHO05D004351 9.7e-15 83.2 83 55.4
AUR62031283 Chenopodium quinoa HOM05D003561 ORTHO05D004351 9.7e-15 83.2 87 54.0
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 9.7e-15 83.2 82 56.1
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 9.7e-15 83.2 83 54.2
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 1.3e-14 82.8 85 51.8
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 1.3e-14 82.8 83 53.0
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 1.3e-14 82.8 82 54.9
Prupe.6G225400 Prunus persica HOM05D003561 ORTHO05D004351 1.6e-14 82.4 82 54.9
Rhsim10G0104800 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.6e-14 82.4 59 69.5
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 2.2e-14 82.0 82 53.7
PSO541G3211 Papaver somniferum HOM05D003561 ORTHO05D004351 2.2e-14 82.0 81 51.9
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 2.2e-14 82.0 83 56.6
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 2.8e-14 81.6 80 55.0
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 2.8e-14 81.6 84 52.4
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 3.7e-14 81.3 82 51.2
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 4.8e-14 80.9 82 53.7
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 8.2e-14 80.1 82 52.4
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 8.2e-14 80.1 86 52.3
SalBow6G0742 Salvia bowleyana HOM05D003561 ORTHO05D004351 8.2e-14 80.1 82 51.2
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 8.2e-14 80.1 82 51.2
CiPaw.05G014100 Carya illinoinensis HOM05D003561 ORTHO05D004351 1.1e-13 79.7 82 57.3
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 1.1e-13 79.7 82 54.9
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 1.1e-13 79.7 82 52.4
PSO675G3219 Papaver somniferum HOM05D003561 ORTHO05D004351 1.1e-13 79.7 81 50.6
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.1e-13 79.7 82 53.7
Haze_15327 Corylus avellana HOM05D003561 ORTHO05D004351 1.4e-13 79.3 82 53.7
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 1.4e-13 79.3 85 51.8
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 1.8e-13 79.0 87 49.4
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 1.8e-13 79.0 79 53.2
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 1.8e-13 79.0 79 53.2
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 2.4e-13 78.6 75 54.7
Nn5g30480 Nelumbo nucifera HOM05D003561 ORTHO05D004351 2.4e-13 78.6 82 56.1
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 2.4e-13 78.6 80 55.0
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 3.1e-13 78.2 82 53.7
MD02G1180800 Malus domestica HOM05D003561 ORTHO05D004351 3.1e-13 78.2 87 52.9
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 4.1e-13 77.8 85 51.8
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 4.1e-13 77.8 86 51.2
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 5.3e-13 77.4 80 52.5
Hund06710 Selenicereus undatus HOM05D003561 ORTHO05D004351 5.3e-13 77.4 84 54.8
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 5.3e-13 77.4 85 51.8
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 6.9e-13 77.0 79 50.6
Haze_10211 Corylus avellana HOM05D003561 ORTHO05D033939 1.2e-12 76.3 57 70.2
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 1.2e-12 76.3 84 48.8
Potri.007G051500 Populus trichocarpa HOM05D003561 ORTHO05D004351 1.2e-12 76.3 82 54.9
SGA_v2.0_scaffold225G43001 Striga asiatica HOM05D003561 ORTHO05D004351 1.2e-12 76.3 82 51.2
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 1.5e-12 75.9 84 50.0
Ciclev10024935m.g Citrus clementina HOM05D003561 ORTHO05D004351 1.5e-12 75.9 82 54.9
Lj7C86G5 Lonicera japonica HOM05D003561 ORTHO05D004351 1.5e-12 75.9 84 48.8
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 1.5e-12 75.9 75 53.3
Gohir.A02G153700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 2.0e-12 75.5 84 50.0
Gohir.D03G026700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 2.0e-12 75.5 84 50.0
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 2.0e-12 75.5 84 47.6
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 2.6e-12 75.1 82 51.2
BcaNung04992 Brassica carinata HOM05D003561 ORTHO05D004351 2.6e-12 75.1 86 51.2
A01p04120 Brassica napus HOM05D003561 ORTHO05D004351 2.6e-12 75.1 86 50.0
BraA01t00401Z Brassica rapa HOM05D003561 ORTHO05D004351 2.6e-12 75.1 86 50.0
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 2.6e-12 75.1 81 55.6
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 2.6e-12 75.1 82 54.9
Thecc.01G067200 Theobroma cacao HOM05D003561 ORTHO05D004351 2.6e-12 75.1 80 51.2
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 4.5e-12 74.3 85 50.6
Eucgr.H02268 Eucalyptus grandis HOM05D003561 ORTHO05D004351 4.5e-12 74.3 81 50.6
Prupe.8G138700 Prunus persica HOM05D003561 ORTHO05D004351 4.5e-12 74.3 82 51.2
BcaNung04991 Brassica carinata HOM05D003561 ORTHO05D004351 5.9e-12 73.9 86 52.3
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 5.9e-12 73.9 80 50.0
ECA238G3157 Erigeron canadensis HOM05D003561 ORTHO05D004351 5.9e-12 73.9 81 49.4
FvH4_1g17060 Fragaria vesca HOM05D003561 ORTHO05D004351 5.9e-12 73.9 80 55.0
FAN19G0232 Fragaria x ananassa HOM05D003561 ORTHO05D004351 5.9e-12 73.9 80 55.0
RcHm_v2.0_Chr2g0107231 Rosa chinensis HOM05D003561 ORTHO05D004351 5.9e-12 73.9 79 55.7
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 5.9e-12 73.9 81 49.4
SEGI_36307 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 5.9e-12 73.9 85 44.7
CiPaw.01G008500 Carya illinoinensis HOM05D003561 ORTHO05D004351 7.7e-12 73.6 82 51.2
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 7.7e-12 73.6 83 51.8
PGR102G2010 Punica granatum HOM05D003561 ORTHO05D004351 7.7e-12 73.6 82 48.8
C01p04490 Brassica napus HOM05D003561 ORTHO05D004351 1.0e-11 73.2 86 52.3
BolC1t00435H Brassica oleracea HOM05D003561 ORTHO05D004351 1.0e-11 73.2 86 52.3
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 1.0e-11 73.2 83 49.4
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 1.0e-11 73.2 82 52.4
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 1.3e-11 72.8 83 51.8
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 1.3e-11 72.8 80 47.5
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 1.3e-11 72.8 86 51.2
Hund29372 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.3e-11 72.8 61 65.6
Hund29375 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.3e-11 72.8 61 65.6
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 1.7e-11 72.4 83 53.0
HanXRQChr14g0449611 Helianthus annuus HOM05D003561 ORTHO05D004351 1.7e-11 72.4 81 49.4
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 1.7e-11 72.4 72 52.8
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 2.2e-11 72.0 84 45.2
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 2.2e-11 72.0 82 52.4
Migut.H00379 Erythranthe guttata HOM05D003561 ORTHO05D004351 2.9e-11 71.6 81 45.7
Gorai.003G028400 Gossypium raimondii HOM05D003561 ORTHO05D004351 2.9e-11 71.6 77 50.6
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 2.9e-11 71.6 84 45.2
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 3.8e-11 71.2 82 51.2
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 3.8e-11 71.2 82 51.2
EL10Ac6g15669 Beta vulgaris HOM05D003561 ORTHO05D004351 8.5e-11 70.1 57 61.4
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 8.5e-11 70.1 83 54.2
Atru.chr3.215 Acer truncatum HOM05D003561 ORTHO05D004351 1.1e-10 69.7 81 51.9
Atru.chr3.226 Acer truncatum HOM05D003561 ORTHO05D004351 1.1e-10 69.7 81 51.9
FAN28G0575 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.1e-10 69.7 50 72.0
Pp3c18_4410 Physcomitrium patens HOM05D003561 ORTHO05D004351 1.1e-10 69.7 81 43.2
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 1.1e-10 69.7 81 51.9
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 1.4e-10 69.3 81 50.6
Lsat_1_v5_gn_2_83541 Lactuca sativa HOM05D003561 ORTHO05D004351 1.9e-10 68.9 76 48.7
DCAR_010841 Daucus carota HOM05D003561 ORTHO05D004351 2.5e-10 68.6 80 46.2
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 3.2e-10 68.2 83 50.6
Ah.03g146260 Amaranthus hybridus HOM05D003561 ORTHO05D004351 5.5e-10 67.4 86 45.3
RcHm_v2.0_Chr6g0254291 Rosa chinensis HOM05D003561 ORTHO05D004351 7.2e-10 67.0 75 53.3
AUR62003959 Chenopodium quinoa HOM05D003561 ORTHO05D004351 2.1e-09 65.5 59 55.9
AUR62038271 Chenopodium quinoa HOM05D003561 ORTHO05D004351 2.1e-09 65.5 59 55.9
Cc07_g06660 Coffea canephora HOM05D003561 ORTHO05D004351 2.7e-09 65.1 55 58.2
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 2.7e-09 65.1 68 51.5
COL.COLO4_11519 Corchorus olitorius HOM05D003561 ORTHO05D004351 6.1e-09 63.9 99 42.4
Pp3c22_17660 Physcomitrium patens HOM05D003561 ORTHO05D004351 6.1e-09 63.9 72 45.8
SMO145G0124 Selaginella moellendorffii HOM05D003561 ORTHO05D004351 7.9e-09 63.5 48 56.2
SGA_v2.0_scaffold143G35782 Striga asiatica HOM05D003561 ORTHO05D004351 1.0e-08 63.2 86 45.3
Hund13924 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.8e-08 62.4 53 56.6
Oeu003572.1 Olea europaea HOM05D003561 ORTHO05D004351 2.3e-08 62.0 81 44.4
vmacro19459 Vaccinium macrocarpon HOM05D003561 ORTHO05D033939 3.0e-08 61.6 44 68.2
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 5.1e-08 60.8 112 37.5
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 1.5e-07 59.3 71 52.1
AagrBONN_evm.TU.Sc2ySwM_340.381 Anthoceros agrestis HOM05D003561 ORTHO05D004351 1.5e-07 59.3 74 41.9
GSVIVG01037885001 Vitis vinifera HOM05D003561 ORTHO05D004351 4.8e-06 54.3 38 71.1
COL.COLO4_32560 Corchorus olitorius HOM05D003561 ORTHO05D004351 6.3e-06 53.9 66 47.0
SalBow1G5992 Salvia bowleyana HOM05D003561 ORTHO05D004351 6.3e-06 53.9 52 53.8
Peaxi162Scf00449g00016 Petunia axillaris HOM05D003561 ORTHO05D004351 8.2e-06 53.5 51 54.9


User provided reference genes

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