Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044953 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 2.4e-127 458.8 221 100.0
CSS0044154 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 6.0e-110 401.0 205 94.1
Actinidia12002 Actinidia chinensis HOM05D003561 ORTHO05D004351 2.7e-86 322.4 205 80.0
vmacro05379 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 9.7e-84 313.9 206 75.2
Rhsim10G0104800 Rhododendron simsii HOM05D003561 ORTHO05D004351 6.3e-83 311.2 205 75.6
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 1.1e-79 300.4 206 73.3
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 1.0e-69 267.3 205 63.4
Atru.chr3.226 Acer truncatum HOM05D003561 ORTHO05D004351 2.0e-68 263.1 196 64.8
Nitab4.5_0000604g0020 Nicotiana tabacum HOM05D003561 ORTHO05D004351 2.2e-67 259.6 206 61.7
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 6.3e-67 258.1 205 64.4
CAN.G1482.2 Capsicum annuum HOM05D003561 ORTHO05D004351 5.3e-66 255.0 206 60.2
Peaxi162Scf00449g00016 Petunia axillaris HOM05D003561 ORTHO05D004351 5.3e-66 255.0 206 60.2
RcHm_v2.0_Chr2g0107231 Rosa chinensis HOM05D003561 ORTHO05D004351 1.2e-65 253.8 201 60.7
Nitab4.5_0000284g0010 Nicotiana tabacum HOM05D003561 ORTHO05D004351 2.0e-65 253.1 206 60.7
Sopen02g014910 Solanum pennellii HOM05D003561 ORTHO05D004351 3.5e-65 252.3 185 64.3
FvH4_1g17060 Fragaria vesca HOM05D003561 ORTHO05D004351 5.9e-65 251.5 198 62.1
FAN19G0232 Fragaria x ananassa HOM05D003561 ORTHO05D004351 5.9e-65 251.5 201 61.2
FAN28G0575 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.3e-64 250.4 201 60.7
Nn5g30480 Nelumbo nucifera HOM05D003561 ORTHO05D004351 1.3e-64 250.4 205 61.5
FAN26G2049 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.7e-64 250.0 201 60.7
Solyc02g064800.3 Solanum lycopersicum HOM05D003561 ORTHO05D004351 1.7e-64 250.0 185 63.2
Ciclev10024935m.g Citrus clementina HOM05D003561 ORTHO05D004351 2.2e-64 249.6 182 65.9
PGSC0003DMG400013016 Solanum tuberosum HOM05D003561 ORTHO05D004351 8.5e-64 247.7 185 62.7
Duzib147G0573 Durio zibethinus HOM05D003561 ORTHO05D004351 4.2e-63 245.4 195 63.1
Lj7C86G5 Lonicera japonica HOM05D003561 ORTHO05D004351 7.2e-63 244.6 205 60.5
COL.COLO4_11519 Corchorus olitorius HOM05D003561 ORTHO05D004351 1.6e-62 243.4 201 62.2
Manes.13G115200 Manihot esculenta HOM05D003561 ORTHO05D004351 1.6e-62 243.4 201 57.2
Haze_15327 Corylus avellana HOM05D003561 ORTHO05D004351 2.1e-62 243.0 202 58.9
Prupe.6G225400 Prunus persica HOM05D003561 ORTHO05D004351 3.6e-62 242.3 182 62.6
Cfa004087 Carpinus fangiana HOM05D003561 ORTHO05D004351 6.1e-62 241.5 194 60.8
Thecc.01G067200 Theobroma cacao HOM05D003561 ORTHO05D004351 8.0e-62 241.1 195 62.1
HanXRQChr14g0449611 Helianthus annuus HOM05D003561 ORTHO05D004351 1.4e-61 240.4 180 63.9
Gohir.D03G026700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 2.3e-61 239.6 181 63.5
DCAR_010841 Daucus carota HOM05D003561 ORTHO05D004351 3.0e-61 239.2 204 56.4
Gohir.A02G153700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 6.7e-61 238.0 202 58.4
MD02G1180800 Malus domestica HOM05D003561 ORTHO05D004351 8.8e-61 237.7 182 63.2
Gorai.003G028400 Gossypium raimondii HOM05D003561 ORTHO05D004351 2.6e-60 236.1 203 57.6
ECA238G3157 Erigeron canadensis HOM05D003561 ORTHO05D004351 3.3e-60 235.7 178 64.0
Cc07_g06660 Coffea canephora HOM05D003561 ORTHO05D004351 5.7e-60 235.0 205 57.1
Eucgr.H02268 Eucalyptus grandis HOM05D003561 ORTHO05D004351 7.5e-60 234.6 179 62.0
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 9.7e-60 234.2 194 58.2
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 9.7e-60 234.2 205 58.0
PSO541G3211 Papaver somniferum HOM05D003561 ORTHO05D004351 2.2e-59 233.0 188 59.6
PSO675G3219 Papaver somniferum HOM05D003561 ORTHO05D004351 3.7e-59 232.3 188 59.6
Potri.007G051500 Populus trichocarpa HOM05D003561 ORTHO05D004351 4.8e-59 231.9 195 58.5
Lsat_1_v5_gn_2_83541 Lactuca sativa HOM05D003561 ORTHO05D004351 6.3e-59 231.5 174 64.4
CiPaw.01G008500 Carya illinoinensis HOM05D003561 ORTHO05D004351 8.2e-59 231.1 176 63.6
Haze_10212 Corylus avellana HOM05D003561 ORTHO05D004351 1.1e-58 230.7 205 56.6
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 2.4e-58 229.6 204 54.9
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 2.4e-58 229.6 205 59.0
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 9.1e-58 227.6 205 58.0
CSS0037584 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 9.1e-58 227.6 205 58.0
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 9.1e-58 227.6 205 56.6
PGR102G2010 Punica granatum HOM05D003561 ORTHO05D004351 1.0e-56 224.2 175 61.7
Prupe.8G138700 Prunus persica HOM05D003561 ORTHO05D004351 1.3e-56 223.8 171 62.6
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.7e-56 223.4 208 57.2
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 2.2e-56 223.0 205 56.6
CiPaw.05G014100 Carya illinoinensis HOM05D003561 ORTHO05D004351 2.9e-56 222.6 207 57.5
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 8.5e-56 221.1 207 57.5
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.5e-55 220.3 208 56.2
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 5.5e-55 218.4 171 62.6
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 5.5e-55 218.4 171 61.4
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.2e-54 217.2 205 57.1
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 3.6e-54 215.7 171 60.8
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 8.0e-54 214.5 171 60.2
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 8.0e-54 214.5 171 60.8
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 8.0e-54 214.5 207 55.6
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.0e-53 214.2 171 60.2
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.0e-53 214.2 205 56.6
EL10Ac6g15669 Beta vulgaris HOM05D003561 ORTHO05D004351 1.4e-53 213.8 173 56.6
Lj5A216G104 Lonicera japonica HOM05D003561 ORTHO05D004351 2.3e-53 213.0 205 51.2
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 3.0e-53 212.6 205 54.1
Rhsim05G0089000 Rhododendron simsii HOM05D003561 ORTHO05D000355 3.0e-53 212.6 206 55.8
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 3.0e-53 212.6 208 55.8
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 4.0e-53 212.2 171 60.8
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 4.0e-53 212.2 208 55.8
Hund29372 Selenicereus undatus HOM05D003561 ORTHO05D004351 5.2e-53 211.8 177 58.8
Hund29375 Selenicereus undatus HOM05D003561 ORTHO05D004351 5.2e-53 211.8 177 58.8
GSVIVG01037885001 Vitis vinifera HOM05D003561 ORTHO05D004351 5.2e-53 211.8 172 61.6
DCAR_001664 Daucus carota HOM05D003561 ORTHO05D004351 8.8e-53 211.1 194 56.7
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 8.8e-53 211.1 207 53.6
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 8.8e-53 211.1 208 55.3
AUR62003959 Chenopodium quinoa HOM05D003561 ORTHO05D004351 1.2e-52 210.7 188 56.4
Hund13924 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.2e-52 210.7 179 58.1
COL.COLO4_32560 Corchorus olitorius HOM05D003561 ORTHO05D004351 1.5e-52 210.3 207 54.1
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 1.5e-52 210.3 170 61.2
vmacro19460 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 1.5e-52 210.3 207 55.6
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 1.5e-52 210.3 184 58.7
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.6e-52 209.5 171 59.1
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 4.4e-52 208.8 173 63.0
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 5.7e-52 208.4 199 55.8
Cpa.g.sc292.9 Carica papaya HOM05D003561 ORTHO05D004351 1.3e-51 207.2 207 52.7
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 1.3e-51 207.2 184 58.2
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 1.7e-51 206.8 199 56.8
RcHm_v2.0_Chr6g0254291 Rosa chinensis HOM05D003561 ORTHO05D004351 2.2e-51 206.5 171 59.6
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 2.8e-51 206.1 201 53.2
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 3.7e-51 205.7 171 60.8
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 4.8e-51 205.3 173 59.0
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 8.3e-51 204.5 175 58.3
SalBow6G0742 Salvia bowleyana HOM05D003561 ORTHO05D004351 1.1e-50 204.1 205 53.7
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 1.1e-50 204.1 205 53.7
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 1.4e-50 203.8 200 55.5
FAN20G0240 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.8e-50 203.4 171 57.3
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 2.4e-50 203.0 201 52.7
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 4.1e-50 202.2 177 57.1
AUR62027366 Chenopodium quinoa HOM05D003561 ORTHO05D004351 4.1e-50 202.2 200 51.0
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 4.1e-50 202.2 201 52.2
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 7.0e-50 201.4 172 61.0
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 9.1e-50 201.1 199 54.8
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 9.1e-50 201.1 176 58.0
SGA_v2.0_scaffold225G43001 Striga asiatica HOM05D003561 ORTHO05D004351 9.1e-50 201.1 177 56.5
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 1.2e-49 200.7 172 58.1
Ah.03g146260 Amaranthus hybridus HOM05D003561 ORTHO05D004351 2.7e-49 199.5 174 57.5
Oeu003572.1 Olea europaea HOM05D003561 ORTHO05D004351 5.9e-49 198.4 210 48.6
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 1.3e-48 197.2 172 60.5
Ah.09g232050 Amaranthus hybridus HOM05D003561 ORTHO05D004351 2.2e-48 196.4 207 49.8
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 2.9e-48 196.1 191 55.5
AUR62031283 Chenopodium quinoa HOM05D003561 ORTHO05D004351 5.0e-48 195.3 200 50.0
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 5.0e-48 195.3 172 60.5
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 8.5e-48 194.5 174 58.6
Hund06710 Selenicereus undatus HOM05D003561 ORTHO05D004351 8.5e-48 194.5 175 55.4
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 1.5e-47 193.7 171 57.3
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 1.9e-47 193.4 179 55.9
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 1.8e-45 186.8 174 58.0
Atru.chr3.215 Acer truncatum HOM05D003561 ORTHO05D004351 3.0e-45 186.0 131 67.2
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 1.5e-44 183.7 199 51.8
A01p04120 Brassica napus HOM05D003561 ORTHO05D004351 2.2e-43 179.9 171 55.6
BraA01t00401Z Brassica rapa HOM05D003561 ORTHO05D004351 2.8e-43 179.5 171 55.6
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 6.3e-43 178.3 195 50.8
RcHm_v2.0_Chr6g0254371 Rosa chinensis HOM05D003561 ORTHO05D004351 1.1e-42 177.6 156 57.7
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 1.8e-42 176.8 177 50.8
Rhsim10G0162500 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.8e-42 176.8 201 51.2
BcaNung04991 Brassica carinata HOM05D003561 ORTHO05D004351 5.4e-42 175.3 171 53.8
SEGI_28319 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 1.2e-41 174.1 186 49.5
SEGI_36307 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 1.2e-41 174.1 186 49.5
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 1.6e-41 173.7 171 52.0
Rhsim10G0161900 Rhododendron simsii HOM05D003561 ORTHO05D000355 2.7e-41 172.9 159 58.5
C01p04490 Brassica napus HOM05D003561 ORTHO05D004351 3.5e-41 172.6 171 52.6
BolC1t00435H Brassica oleracea HOM05D003561 ORTHO05D004351 3.5e-41 172.6 171 52.6
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 5.9e-41 171.8 170 51.8
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 5.9e-41 171.8 173 53.2
BcaNung04160 Brassica carinata HOM05D003561 ORTHO05D004351 1.0e-40 171.0 181 50.8
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 2.9e-40 169.5 171 52.6
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 6.6e-40 168.3 203 49.3
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 1.6e-38 163.7 171 47.4
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 4.0e-37 159.1 196 49.0
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 5.2e-37 158.7 203 47.8
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 1.2e-36 157.5 196 48.5
SalBow1G5992 Salvia bowleyana HOM05D003561 ORTHO05D004351 2.2e-35 153.3 149 53.7
AUR62038271 Chenopodium quinoa HOM05D003561 ORTHO05D004351 3.2e-34 149.4 188 43.1
Pp3c22_17660 Physcomitrium patens HOM05D003561 ORTHO05D004351 3.3e-31 139.4 174 46.6
Pp3c18_4410 Physcomitrium patens HOM05D003561 ORTHO05D004351 1.8e-29 133.7 167 43.7
AagrBONN_evm.TU.Sc2ySwM_111.1 Anthoceros agrestis HOM05D003561 ORTHO05D004351 5.2e-29 132.1 167 41.9
SGA_v2.0_scaffold143G35782 Striga asiatica HOM05D003561 ORTHO05D004351 8.3e-27 124.8 129 49.6
SMO145G0124 Selaginella moellendorffii HOM05D003561 ORTHO05D004351 3.9e-24 115.9 164 39.6
PRCOL_00006635 Prasinoderma coloniale HOM05D003561 ORTHO05D004351 1.4e-21 107.5 180 34.4
Sc07g0000620 Simmondsia chinensis HOM05D003561 ORTHO05D004351 5.8e-20 102.1 96 51.0
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.1e-13 81.3 45 75.6
Cpa.g.sc6.61 Carica papaya HOM05D003561 ORTHO05D004351 3.8e-11 72.8 46 69.6
AagrBONN_evm.TU.Sc2ySwM_340.381 Anthoceros agrestis HOM05D003561 ORTHO05D004351 3.2e-10 69.7 167 28.7
Solyc01g067990.1 Solanum lycopersicum HOM05D003561 ORTHO05D004351 2.7e-09 66.6 132 34.8
Atru.chr3.214 Acer truncatum HOM05D003561 ORTHO05D004351 3.5e-09 66.2 51 60.8
Migut.H00379 Erythranthe guttata HOM05D003561 ORTHO05D004351 3.6e-06 56.2 71 43.7


User provided reference genes

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