Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044945 Camellia sinensis var. sinensis HOM05D004749 ORTHO05D005995 1.7e-149 532.7 288 100.0
Actinidia13350 Actinidia chinensis HOM05D004749 ORTHO05D005995 1.3e-93 347.1 284 72.9
CSS0022958 Camellia sinensis var. sinensis HOM05D004749 ORTHO05D005995 2.1e-91 339.7 285 74.0
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 1.1e-90 337.4 270 74.8
Cc02_g31810 Coffea canephora HOM05D004749 ORTHO05D005995 1.2e-89 334.0 283 67.8
QL06p012791 Quercus lobata HOM05D004749 ORTHO05D005995 1.5e-89 333.6 284 71.5
Hma1.2p1_1168F.1_g263150 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 1.4e-87 327.0 246 74.0
Hma1.2p1_4126F.1_g338340 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 1.4e-87 327.0 246 74.0
Peaxi162Scf00074g02033 Petunia axillaris HOM05D004749 ORTHO05D005995 1.2e-86 323.9 285 69.1
Nn4g25537 Nelumbo nucifera HOM05D004749 ORTHO05D005995 2.1e-86 323.2 284 67.6
TAR633G2406 Trochodendron aralioides HOM05D004749 ORTHO05D005995 1.3e-85 320.5 286 68.2
Nn3g21759 Nelumbo nucifera HOM05D004749 ORTHO05D005995 3.0e-85 319.3 285 68.1
FvH4_4g12660 Fragaria vesca HOM05D004749 ORTHO05D005995 3.9e-85 318.9 262 69.5
FAN07G1280 Fragaria x ananassa HOM05D004749 ORTHO05D005995 3.9e-85 318.9 262 69.5
FAN12G1239 Fragaria x ananassa HOM05D004749 ORTHO05D005995 3.9e-85 318.9 247 72.5
Cfa014134 Carpinus fangiana HOM05D004749 ORTHO05D005995 5.1e-85 318.5 285 66.0
CAN.G532.7 Capsicum annuum HOM05D004749 ORTHO05D005995 1.5e-84 317.0 282 67.7
Duzib151G0494 Durio zibethinus HOM05D004749 ORTHO05D005995 1.5e-84 317.0 286 66.8
FAN22G0862 Fragaria x ananassa HOM05D004749 ORTHO05D005995 2.5e-84 316.2 247 72.1
TWI73G0343 Tripterygium wilfordii HOM05D004749 ORTHO05D005995 5.7e-84 315.1 282 66.3
Manes.08G074300 Manihot esculenta HOM05D004749 ORTHO05D005995 7.4e-84 314.7 282 68.4
Nitab4.5_0001220g0090 Nicotiana tabacum HOM05D004749 ORTHO05D005995 9.6e-84 314.3 248 71.8
TAR362G1144 Trochodendron aralioides HOM05D004749 ORTHO05D005995 1.3e-83 313.9 244 72.5
Eucgr.K01628 Eucalyptus grandis HOM05D004749 ORTHO05D005995 2.1e-83 313.2 286 65.7
Lalb_Chr07g0181981 Lupinus albus HOM05D004749 ORTHO05D005995 2.8e-83 312.8 285 65.3
PGSC0003DMG400012333 Solanum tuberosum HOM05D004749 ORTHO05D005995 2.8e-83 312.8 247 70.9
SalBow1G5780 Salvia bowleyana HOM05D004749 ORTHO05D005995 3.7e-83 312.4 237 73.8
QL04p048178 Quercus lobata HOM05D004749 ORTHO05D005995 4.8e-83 312.0 247 71.3
Sopen08g029650 Solanum pennellii HOM05D004749 ORTHO05D005995 4.8e-83 312.0 247 70.9
Gohir.A09G223200 Gossypium hirsutum HOM05D004749 ORTHO05D005995 6.3e-83 311.6 285 65.6
Rhsim10G0104300 Rhododendron simsii HOM05D004749 ORTHO05D005995 6.3e-83 311.6 236 74.6
MSTRG.12116 Avicennia marina HOM05D004749 ORTHO05D005995 8.2e-83 311.2 284 65.8
ClCG11G010380 Citrullus lanatus HOM05D004749 ORTHO05D005995 8.2e-83 311.2 285 65.3
Nitab4.5_0006920g0020 Nicotiana tabacum HOM05D004749 ORTHO05D005995 8.2e-83 311.2 246 71.1
Solyc08g081330.4 Solanum lycopersicum HOM05D004749 ORTHO05D005995 1.4e-82 310.5 247 70.4
Actinidia14251 Actinidia chinensis HOM05D004749 ORTHO05D005995 2.4e-82 309.7 209 81.3
CDE02G1224 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 2.4e-82 309.7 247 69.6
RcHm_v2.0_Chr4g0411531 Rosa chinensis HOM05D004749 ORTHO05D005995 2.4e-82 309.7 247 70.9
Duzib052G0525 Durio zibethinus HOM05D004749 ORTHO05D005995 3.1e-82 309.3 265 68.7
CsaV3_2G009980 Cucumis sativus L. HOM05D004749 ORTHO05D005995 4.1e-82 308.9 290 65.5
Potri.010G148000 Populus trichocarpa HOM05D004749 ORTHO05D005995 4.1e-82 308.9 282 64.9
Thecc.04G246100 Theobroma cacao HOM05D004749 ORTHO05D005995 4.1e-82 308.9 246 70.3
Potri.008G103000 Populus trichocarpa HOM05D004749 ORTHO05D005995 1.2e-81 307.4 285 68.4
Atru.chr4.3050 Acer truncatum HOM05D004749 ORTHO05D005995 1.5e-81 307.0 247 70.0
MBI19_g03265_MAGBIO Magnolia biondii HOM05D004749 ORTHO05D005995 1.5e-81 307.0 245 71.0
Sabra10G0114100 Salix brachista HOM05D004749 ORTHO05D005995 1.5e-81 307.0 282 64.2
Migut.A01124 Erythranthe guttata HOM05D004749 ORTHO05D005995 2.0e-81 306.6 248 69.4
Glyma.17G035700 Glycine max HOM05D004749 ORTHO05D005995 2.0e-81 306.6 287 67.6
SGA_v2.0_scaffold28G11759 Striga asiatica HOM05D004749 ORTHO05D005995 2.0e-81 306.6 262 67.6
CANSAT11G0071 Cannabis sativa HOM05D004749 ORTHO05D005995 2.6e-81 306.2 249 69.5
CiPaw.02G073100 Carya illinoinensis HOM05D004749 ORTHO05D005995 3.4e-81 305.8 287 67.6
Ciclev10005025m.g Citrus clementina HOM05D004749 ORTHO05D005995 3.4e-81 305.8 269 64.7
MELO3C008635.2 Cucumis melo HOM05D004749 ORTHO05D005995 4.5e-81 305.4 286 65.0
Prupe.1G114400 Prunus persica HOM05D004749 ORTHO05D005995 4.5e-81 305.4 247 69.6
Gohir.D09G225200 Gossypium hirsutum HOM05D004749 ORTHO05D005995 5.9e-81 305.1 246 69.5
Gorai.006G246700 Gossypium raimondii HOM05D004749 ORTHO05D005995 5.9e-81 305.1 246 69.5
Oeu061088.1 Olea europaea HOM05D004749 ORTHO05D005995 5.9e-81 305.1 245 69.8
PSO210G7457 Papaver somniferum HOM05D004749 ORTHO05D005995 5.9e-81 305.1 247 68.8
GSVIVG01034965001 Vitis vinifera HOM05D004749 ORTHO05D005995 5.9e-81 305.1 246 69.1
DCAR_026992 Daucus carota HOM05D004749 ORTHO05D005995 7.6e-81 304.7 249 69.9
PSO210G5482 Papaver somniferum HOM05D004749 ORTHO05D005995 7.6e-81 304.7 269 65.8
arahy.Tifrunner.gnm1.ann1.YK8CX2 Arachis hypogaea HOM05D004749 ORTHO05D005995 1.3e-80 303.9 290 63.4
Sc17g0002650 Simmondsia chinensis HOM05D004749 ORTHO05D005995 1.3e-80 303.9 247 68.4
Aqoxy1G00958 Aquilegia oxysepala HOM05D004749 ORTHO05D005995 1.7e-80 303.5 282 64.9
MD12G1007400 Malus domestica HOM05D004749 ORTHO05D005995 1.7e-80 303.5 247 69.2
arahy.Tifrunner.gnm1.ann1.CI16ME Arachis hypogaea HOM05D004749 ORTHO05D005995 2.9e-80 302.8 247 67.6
EL10Ac7g16373 Beta vulgaris HOM05D004749 ORTHO05D005995 2.9e-80 302.8 247 67.2
Glyma.07G237800 Glycine max HOM05D004749 ORTHO05D005995 2.9e-80 302.8 288 64.9
Manes.09G084300 Manihot esculenta HOM05D004749 ORTHO05D005995 2.9e-80 302.8 247 69.2
ECA246G2874 Erigeron canadensis HOM05D004749 ORTHO05D005995 6.5e-80 301.6 247 69.2
FAN17G3131 Fragaria x ananassa HOM05D004749 ORTHO05D005995 8.5e-80 301.2 285 62.5
Hund18596 Selenicereus undatus HOM05D004749 ORTHO05D005995 1.1e-79 300.8 246 68.7
Ca_10737_v3 Cicer arietinum L. HOM05D004749 ORTHO05D005995 1.4e-79 300.4 242 69.4
Dinv15143 Davidia involucrata HOM05D004749 ORTHO05D005995 1.9e-79 300.1 191 84.8
CiPaw.01G136300 Carya illinoinensis HOM05D004749 ORTHO05D005995 4.2e-79 298.9 247 68.0
PGR031G3778 Punica granatum HOM05D004749 ORTHO05D005995 5.5e-79 298.5 249 69.5
MD16G1150500 Malus domestica HOM05D004749 ORTHO05D005995 1.2e-78 297.4 247 68.0
Sp7g19970 Schrenkiella parvula HOM05D004749 ORTHO05D005995 1.2e-78 297.4 247 67.2
Cpa.g.sc106.97 Carica papaya HOM05D004749 ORTHO05D005995 1.6e-78 297.0 235 70.6
AUR62005917 Chenopodium quinoa HOM05D004749 ORTHO05D005995 1.6e-78 297.0 238 69.3
Haze_22859 Corylus avellana HOM05D004749 ORTHO05D005995 1.6e-78 297.0 286 63.3
Carub.0007s1960 Capsella rubella HOM05D004749 ORTHO05D005995 2.1e-78 296.6 247 66.0
Thhalv10025484m.g Eutrema salsugineum HOM05D004749 ORTHO05D005995 2.7e-78 296.2 247 67.6
Sabra08G0077900 Salix brachista HOM05D004749 ORTHO05D005995 2.7e-78 296.2 247 68.8
AT4G21800 Arabidopsis thaliana HOM05D004749 ORTHO05D005995 4.6e-78 295.4 247 66.8
Haze_01330 Corylus avellana HOM05D004749 ORTHO05D005995 4.6e-78 295.4 292 64.0
AUR62028146 Chenopodium quinoa HOM05D004749 ORTHO05D005995 7.9e-78 294.7 231 71.0
Phvul.003G116600 Phaseolus vulgaris HOM05D004749 ORTHO05D005995 7.9e-78 294.7 247 67.2
Sed0018873 Sechium edule HOM05D004749 ORTHO05D005995 7.9e-78 294.7 247 68.0
AL7G32130 Arabidopsis lyrata HOM05D004749 ORTHO05D005995 1.0e-77 294.3 247 66.4
Medtr1g100240 Medicago truncatula HOM05D004749 ORTHO05D005995 1.0e-77 294.3 238 69.3
AUR62041770 Chenopodium quinoa HOM05D004749 ORTHO05D005995 1.8e-77 293.5 231 71.0
CARHR228550 Cardamine hirsuta HOM05D004749 ORTHO05D005995 3.0e-77 292.7 247 66.4
VMungo0720G2504 Vigna mungo HOM05D004749 ORTHO05D005995 3.9e-77 292.4 238 67.6
BolC1t01536H Brassica oleracea HOM05D004749 ORTHO05D005995 5.1e-77 292.0 247 65.6
HanXRQChr17g0569351 Helianthus annuus HOM05D004749 ORTHO05D005995 5.1e-77 292.0 246 65.9
COL.COLO4_15791 Corchorus olitorius HOM05D004749 ORTHO05D005995 6.7e-77 291.6 247 67.6
A01p13130 Brassica napus HOM05D004749 ORTHO05D005995 1.1e-76 290.8 247 65.2
BraA01t01257Z Brassica rapa HOM05D004749 ORTHO05D005995 1.1e-76 290.8 247 65.2
SalBow7G1269 Salvia bowleyana HOM05D004749 ORTHO05D005995 1.1e-76 290.8 198 79.8
THA.LOC104827101 Tarenaya hassleriana HOM05D004749 ORTHO05D005995 1.1e-76 290.8 284 63.0
Lj4g0011402 Lotus japonicus HOM05D004749 ORTHO05D005995 1.5e-76 290.4 237 67.9
BcaC09g51199 Brassica carinata HOM05D004749 ORTHO05D005995 3.3e-76 289.3 247 65.2
C01p15820 Brassica napus HOM05D004749 ORTHO05D005995 3.3e-76 289.3 247 65.2
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 5.7e-76 288.5 240 68.8
Psat6g193640 Pisum sativum HOM05D004749 ORTHO05D005995 1.3e-75 287.3 286 62.6
TPR.G27004 Trifolium pratense HOM05D004749 ORTHO05D005995 3.7e-75 285.8 237 67.9
Lsat_1_v5_gn_9_58140 Lactuca sativa HOM05D004749 ORTHO05D005995 8.2e-75 284.6 235 67.7
BcaNung02248 Brassica carinata HOM05D004749 ORTHO05D005995 1.1e-74 284.3 245 64.5
vmacro12071 Vaccinium macrocarpon HOM05D004749 ORTHO05D005995 1.1e-74 284.3 265 62.3
Zm00001eb395880 Zea mays HOM05D004749 ORTHO05D005995 1.8e-74 283.5 282 61.0
vmacro15173 Vaccinium macrocarpon HOM05D004749 ORTHO05D005995 8.5e-72 274.6 278 58.6
ATR0693G032 Amborella trichopoda HOM05D004749 ORTHO05D005995 2.5e-71 273.1 246 63.0
Aa31LG6G3810 Aethionema arabicum HOM05D004749 ORTHO05D005995 5.5e-71 271.9 191 75.9
AagrBONN_evm.TU.Sc2ySwM_368.1659 Anthoceros agrestis HOM05D004749 ORTHO05D005995 2.1e-70 270.0 230 64.3
SEGI_28650 Sequoiadendron giganteum HOM05D004749 ORTHO05D005995 7.9e-70 268.1 231 63.2
MD14G1004700 Malus domestica HOM05D004749 ORTHO05D005995 2.3e-69 266.5 282 57.8
Hma1.2p1_0078F.1_g039880 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 3.0e-69 266.2 247 67.6
BraA08t33522Z Brassica rapa HOM05D004749 ORTHO05D005995 4.8e-67 258.8 246 62.6
Mapoly0080s0030 Marchantia polymorpha HOM05D004749 ORTHO05D005995 6.9e-66 255.0 235 58.7
HPP92_008940 Vanilla planifolia HOM05D004749 ORTHO05D005995 6.9e-66 255.0 157 84.7
HanXRQChr10g0314441 Helianthus annuus HOM05D004749 ORTHO05D005995 1.9e-63 246.9 240 60.8
Pp3c8_16870 Physcomitrium patens HOM05D004749 ORTHO05D005995 1.9e-63 246.9 231 58.4
CBR_g44475 Chara braunii HOM05D004749 ORTHO05D005995 2.1e-62 243.4 191 66.0
Hma1.2p1_1400F.1_g280890 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 4.7e-62 242.3 249 59.0
Lju912A2T64 Lonicera japonica HOM05D004749 ORTHO05D005995 4.4e-60 235.7 246 58.1
SMO271G0158 Selaginella moellendorffii HOM05D004749 ORTHO05D005995 2.8e-59 233.0 209 59.8
DCAR_030456 Daucus carota HOM05D004749 ORTHO05D005995 2.4e-58 229.9 266 52.6
arahy.Tifrunner.gnm1.ann1.08UNPH Arachis hypogaea HOM05D004749 ORTHO05D005995 4.7e-54 215.7 122 87.7
arahy.Tifrunner.gnm1.ann1.3R6CDR Arachis hypogaea HOM05D004749 ORTHO05D005995 4.7e-54 215.7 122 87.7
Cre06.g267150 Chlamydomonas reinhardtii HOM05D004749 ORTHO05D005995 6.7e-53 211.8 189 58.7
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 8.8e-53 211.5 125 86.4
MCO13G184 Micromonas commoda HOM05D004749 ORTHO05D005995 4.4e-52 209.1 231 52.4
HanXRQChr08g0212681 Helianthus annuus HOM05D004749 ORTHO05D005995 2.2e-51 206.8 190 63.2
HPP92_008928 Vanilla planifolia HOM05D004749 ORTHO05D005995 1.3e-48 197.6 203 58.6
PRCOL_00000431 Prasinoderma coloniale HOM05D004749 ORTHO05D005995 1.9e-47 193.7 237 46.8
Lj6C561G5 Lonicera japonica HOM05D004749 ORTHO05D005995 2.5e-47 193.4 191 60.7
BcaC01g00741 Brassica carinata HOM05D004749 ORTHO05D005995 1.6e-46 190.7 271 46.9
Haze_27364 Corylus avellana HOM05D004749 ORTHO05D005995 2.7e-46 189.9 200 51.0
Cfa026321 Carpinus fangiana HOM05D004749 ORTHO05D005995 4.2e-39 166.0 255 38.4
PSO063G4024 Papaver somniferum HOM05D004749 ORTHO05D005995 3.7e-35 152.9 196 49.0
Psat1g194120 Pisum sativum HOM05D002906 ORTHO05D003211 1.1e-34 151.4 131 61.1
unitig_578.g15957 Utricularia gibba HOM05D004749 ORTHO05D005995 9.2e-34 148.3 149 60.4
C03p83720 Brassica napus HOM05D004749 ORTHO05D005995 2.0e-33 147.1 211 48.3
CSS0038246 Camellia sinensis var. sinensis HOM05D004749 ORTHO05D005995 1.0e-32 144.8 135 65.9
BolC3t20652H Brassica oleracea HOM05D004749 ORTHO05D005995 1.8e-21 107.5 213 41.3
Lj6A693T62 Lonicera japonica HOM05D004749 ORTHO05D005995 1.5e-20 104.4 145 51.0
unitig_578.g15956 Utricularia gibba HOM05D004749 ORTHO05D005995 3.2e-18 96.7 85 63.5
A08p15460 Brassica napus HOM05D004749 ORTHO05D005995 1.6e-14 84.3 110 48.2
Hma1.2p1_0013F.1_g008320 Hydrangea macrophylla HOM05D004749 ORTHO05D043482 6.6e-08 62.4 69 59.4
MD13G1150100 Malus domestica HOM05D004749 ORTHO05D005995 4.3e-07 59.7 113 40.7
Psat7g201920 Pisum sativum HOM05D000835 ORTHO05D004825 4.3e-07 59.7 72 45.8
C07p51410 Brassica napus HOM05D004749 ORTHO05D005995 2.8e-06 57.0 45 62.2


User provided reference genes

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