Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.0e-71 272.3 134 100.0
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 9.4e-66 253.4 130 93.8
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.7e-65 251.9 130 93.8
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.7e-65 251.9 130 93.8
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.3e-62 243.0 132 87.1
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 5.9e-60 234.2 130 84.6
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 1.7e-59 232.6 130 85.4
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.9e-59 231.9 133 84.2
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 2.1e-57 225.7 130 78.5
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 1.0e-56 223.4 130 80.8
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 2.3e-56 222.2 130 79.2
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 5.2e-56 221.1 130 80.0
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 8.8e-56 220.3 130 79.2
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 2.0e-55 219.2 130 78.5
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 3.4e-55 218.4 130 76.9
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 3.4e-55 218.4 130 79.2
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 4.4e-55 218.0 130 77.7
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 4.4e-55 218.0 130 77.7
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 5.7e-55 217.6 130 75.4
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 7.5e-55 217.2 130 78.5
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 9.8e-55 216.9 130 80.0
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 1.3e-54 216.5 130 76.9
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 2.2e-54 215.7 130 76.2
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 2.8e-54 215.3 130 79.2
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 3.7e-54 214.9 130 76.2
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 6.3e-54 214.2 130 77.7
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 8.3e-54 213.8 130 75.4
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 1.1e-53 213.4 130 75.4
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 1.4e-53 213.0 130 76.9
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 2.4e-53 212.2 130 76.9
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 3.1e-53 211.8 130 76.2
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 7.0e-53 210.7 130 76.2
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 9.1e-53 210.3 130 74.6
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 9.1e-53 210.3 130 76.2
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 9.1e-53 210.3 130 74.6
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 1.2e-52 209.9 130 76.2
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 1.2e-52 209.9 130 78.5
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 1.2e-52 209.9 130 72.3
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 1.2e-52 209.9 130 76.2
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 1.6e-52 209.5 130 76.9
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 1.6e-52 209.5 130 74.6
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 2.7e-52 208.8 130 76.2
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 2.7e-52 208.8 130 74.6
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 4.5e-52 208.0 130 76.2
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 4.5e-52 208.0 130 75.4
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 5.9e-52 207.6 130 73.8
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 7.7e-52 207.2 127 74.0
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 1.3e-51 206.5 130 73.8
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.7e-51 206.1 130 72.3
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 1.7e-51 206.1 130 76.9
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 2.2e-51 205.7 130 71.5
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 2.2e-51 205.7 130 73.8
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 2.2e-51 205.7 130 73.8
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 3.8e-51 204.9 130 72.3
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 6.5e-51 204.1 130 70.8
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 8.5e-51 203.8 130 71.5
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 1.1e-50 203.4 130 73.1
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 1.1e-50 203.4 130 76.2
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 2.5e-50 202.2 130 70.0
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 2.5e-50 202.2 130 70.0
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 3.2e-50 201.8 130 70.8
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 3.2e-50 201.8 130 70.8
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 9.4e-50 200.3 130 68.5
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 9.4e-50 200.3 130 69.2
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 9.4e-50 200.3 130 69.2
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 9.4e-50 200.3 130 72.3
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 9.4e-50 200.3 130 70.8
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 9.4e-50 200.3 127 75.6
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 9.4e-50 200.3 130 70.8
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 9.4e-50 200.3 126 73.8
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 1.2e-49 199.9 130 74.6
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 1.6e-49 199.5 130 70.0
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 1.6e-49 199.5 130 70.0
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 1.6e-49 199.5 130 73.1
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 4.7e-49 198.0 130 68.5
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 4.7e-49 198.0 130 70.8
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 6.1e-49 197.6 130 68.5
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 1.4e-48 196.4 130 73.1
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 4.0e-48 194.9 131 66.4
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 5.2e-48 194.5 130 69.2
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 5.2e-48 194.5 130 67.7
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 6.8e-48 194.1 130 73.1
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 8.8e-48 193.7 130 70.0
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 1.5e-47 193.0 130 71.5
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 2.0e-47 192.6 130 66.9
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 2.0e-47 192.6 169 59.2
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 2.6e-47 192.2 130 70.8
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.7e-46 189.5 130 68.5
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 2.8e-46 188.7 130 71.5
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 8.3e-46 187.2 163 58.3
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 1.8e-45 186.0 130 66.2
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 2.4e-45 185.7 131 63.4
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 9.1e-45 183.7 112 76.8
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 2.7e-44 182.2 131 61.8
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 3.5e-44 181.8 130 68.5
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 1.7e-43 179.5 130 65.4
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 8.6e-43 177.2 130 64.6
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 4.2e-42 174.9 131 61.8
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 3.6e-41 171.8 131 63.4
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 3.6e-41 171.8 131 63.4
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 3.6e-41 171.8 131 63.4
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 4.7e-41 171.4 130 66.2
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 6.1e-41 171.0 98 80.6
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 6.1e-41 171.0 98 80.6
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 6.1e-41 171.0 139 60.4
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 1.4e-40 169.9 125 68.8
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 2.0e-39 166.0 94 81.9
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 2.7e-36 155.6 127 55.9
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 1.0e-35 153.7 130 58.5
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.5e-34 149.8 131 52.7
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 9.5e-34 147.1 131 53.4
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 9.5e-34 147.1 91 74.7
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 9.5e-34 147.1 98 68.4
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 1.0e-32 143.7 131 53.4
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 2.6e-31 139.0 114 58.8
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 6.4e-30 134.4 127 50.4
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.1e-29 133.7 133 50.4
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 2.6e-23 112.5 90 60.0
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 1.1e-21 107.1 62 77.4
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 1.5e-18 96.7 95 54.7
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 7.3e-18 94.4 63 61.9
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 2.1e-17 92.8 129 34.9
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 4.7e-17 91.7 145 35.9
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 6.2e-17 91.3 125 38.4
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 2.4e-13 79.3 49 75.5
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.0e-11 73.9 140 34.3
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 3.0e-11 72.4 51 60.8
Lsat_1_v5_gn_4_127141 Lactuca sativa HOM05D007351 ORTHO05D009386 7.6e-07 57.8 34 73.5


User provided reference genes

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