Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.3e-163 579.7 294 100.0
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.5e-159 565.5 294 98.6
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 9.7e-140 500.4 299 87.6
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 1.3e-139 500.0 297 87.2
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 4.8e-139 498.0 302 85.1
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 1.7e-136 489.6 301 83.7
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 5.0e-136 488.0 302 83.1
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 1.1e-135 486.9 302 83.4
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.4e-135 486.5 297 83.8
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 1.9e-135 486.1 300 84.7
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 1.2e-134 483.4 302 82.5
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 6.1e-134 481.1 302 82.5
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 3.0e-133 478.8 296 84.8
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 8.8e-133 477.2 300 83.7
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.6e-132 475.7 302 81.8
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 2.6e-132 475.7 312 80.1
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 9.7e-132 473.8 301 82.7
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 1.4e-130 469.9 302 80.8
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 1.4e-130 469.9 300 81.7
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 1.8e-130 469.5 347 75.5
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.8e-130 469.5 302 82.1
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 1.2e-129 466.8 302 80.5
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.2e-129 466.8 298 82.6
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 1.0e-128 463.8 298 81.2
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.0e-128 463.8 303 78.9
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.3e-128 463.4 303 80.2
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 1.3e-128 463.4 302 79.5
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.3e-128 463.4 302 81.1
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.7e-128 463.0 303 80.2
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.5e-127 459.9 303 79.5
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 2.5e-127 459.1 297 82.8
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 5.5e-127 458.0 300 80.0
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 3.6e-126 455.3 297 79.8
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 2.3e-125 452.6 297 78.8
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 3.0e-125 452.2 296 79.7
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 8.8e-125 450.7 302 80.1
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.3e-123 446.8 302 78.5
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 1.7e-123 446.4 298 79.5
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 4.8e-123 444.9 291 79.4
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.4e-122 443.4 302 79.1
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 3.1e-122 442.2 299 78.6
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 5.3e-122 441.4 302 77.5
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 1.2e-121 440.3 294 79.9
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 3.5e-121 438.7 292 77.7
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 2.9e-120 435.6 293 77.8
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 2.9e-120 435.6 302 76.2
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 6.5e-120 434.5 293 77.1
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 6.5e-120 434.5 293 77.1
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 1.5e-119 433.3 295 77.3
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 5.5e-119 431.4 293 76.5
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 5.5e-119 431.4 256 89.1
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.6e-118 429.9 293 77.8
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 2.1e-118 429.5 296 76.7
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 4.7e-118 428.3 295 76.3
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 6.1e-118 427.9 295 76.6
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 6.1e-118 427.9 261 85.1
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.0e-117 427.2 307 73.9
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.0e-117 427.2 294 77.2
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.4e-117 426.8 293 77.5
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 1.8e-117 426.4 296 77.0
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.8e-117 426.4 294 77.2
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.8e-117 426.4 302 75.5
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.8e-117 426.4 302 75.5
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 2.3e-117 426.0 295 76.9
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 2.3e-117 426.0 295 75.9
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 8.8e-117 424.1 295 73.6
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 1.2e-116 423.7 295 76.9
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 1.5e-116 423.3 301 74.4
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 4.4e-116 421.8 299 74.6
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 1.7e-115 419.9 262 82.4
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 2.2e-115 419.5 299 74.2
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 3.7e-115 418.7 293 77.8
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 6.3e-115 417.9 303 73.6
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 8.3e-115 417.5 302 73.8
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 1.1e-114 417.2 257 83.3
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 3.1e-114 415.6 257 83.3
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.2e-113 413.7 270 82.2
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 2.0e-113 412.9 257 82.5
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 2.7e-113 412.5 293 76.5
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 2.2e-112 409.5 299 73.6
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 2.2e-112 409.5 297 72.7
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 2.9e-112 409.1 318 70.1
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 3.8e-112 408.7 297 73.7
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 6.5e-112 407.9 294 75.9
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 1.1e-111 407.1 303 71.9
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 1.9e-111 406.4 322 69.3
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 2.5e-111 406.0 295 72.9
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 2.5e-111 406.0 299 72.9
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 3.2e-111 405.6 300 73.0
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 1.6e-110 403.3 257 84.4
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.6e-110 402.1 249 82.7
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 3.6e-110 402.1 298 73.5
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 3.6e-110 402.1 272 76.8
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 4.7e-110 401.7 272 76.5
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.0e-109 400.6 297 72.7
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 1.4e-109 400.2 297 74.4
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 4.0e-109 398.7 297 72.1
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 8.8e-109 397.5 302 72.5
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 1.2e-108 397.1 302 71.9
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 4.4e-108 395.2 212 95.3
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 2.4e-106 389.4 303 72.9
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 7.0e-106 387.9 293 72.0
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 1.2e-105 387.1 303 71.0
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 7.7e-105 384.4 246 81.3
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 1.0e-104 384.0 245 82.4
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.0e-104 384.0 215 89.3
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 1.3e-104 383.6 246 81.3
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.3e-104 383.6 257 77.8
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 3.8e-104 382.1 246 80.9
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 1.6e-102 376.7 272 74.3
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 4.7e-102 375.2 246 79.3
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 4.4e-100 368.6 244 81.1
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 4.9e-99 365.2 301 67.1
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 4.9e-99 365.2 316 65.5
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 9.2e-98 360.9 254 74.4
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 1.6e-97 360.1 247 77.7
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 8.0e-94 347.8 289 64.0
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.0e-93 347.4 297 65.7
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 1.2e-92 344.0 275 69.5
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.1e-90 337.4 297 64.0
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 3.2e-90 335.9 224 79.9
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 3.2e-90 335.9 278 67.3
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 1.1e-87 327.4 297 64.3
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 3.4e-84 315.8 246 69.5
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 2.9e-83 312.8 215 78.1
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.9e-82 310.1 179 87.7
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 9.2e-82 307.8 179 86.0
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 1.2e-81 307.4 253 66.4
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 1.6e-81 307.0 239 72.0
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 1.3e-75 287.3 303 54.1
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 2.2e-75 286.6 304 53.9
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 6.4e-75 285.0 256 62.9
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 8.4e-75 284.6 271 59.8
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 6.0e-73 278.5 328 47.6
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 1.7e-72 276.9 270 58.5
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.3e-72 276.6 223 65.9
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 4.4e-68 262.3 179 72.6
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 7.6e-68 261.5 231 61.9
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 9.9e-68 261.2 177 72.9
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.3e-62 244.2 163 76.7
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 8.1e-62 241.5 139 87.8
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 9.9e-60 234.6 257 57.2
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 7.1e-58 228.4 204 64.2
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 7.1e-50 201.8 162 67.3
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.3e-48 197.6 218 47.2
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 5.1e-48 195.7 145 70.3
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 1.1e-47 194.5 159 68.6
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.0e-40 171.4 120 78.3
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.1e-39 167.9 116 74.1
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.9e-31 140.6 86 80.2
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 5.3e-29 132.5 82 81.7
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 6.5e-27 125.6 64 93.8
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 3.8e-19 99.8 66 77.3
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 3.0e-16 90.1 110 50.0
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.6e-15 87.0 92 53.3
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 5.7e-15 85.9 110 49.1
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.8e-13 80.9 51 80.4
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 1.0e-11 75.1 55 70.9


User provided reference genes

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