Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.1e-37 159.5 82 100.0
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 4.6e-31 137.5 76 94.7
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 3.9e-22 107.8 72 77.8
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 5.1e-22 107.5 74 77.0
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 1.1e-21 106.3 76 71.1
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 4.5e-18 94.4 76 67.1
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 7.6e-18 93.6 74 67.6
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 1.3e-17 92.8 74 63.5
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 1.2e-15 86.3 74 63.5
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 1.8e-14 82.4 79 55.7
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 1.8e-14 82.4 68 63.2
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 2.3e-14 82.0 72 63.9
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 5.1e-14 80.9 77 57.1
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 6.7e-14 80.5 71 57.7
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 1.6e-12 75.9 66 63.6
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 8.2e-12 73.6 77 50.6
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 8.2e-12 73.6 78 55.1
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 1.8e-11 72.4 77 55.8
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 2.4e-11 72.0 71 54.9
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 4.0e-11 71.2 64 51.6
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 5.3e-11 70.9 77 51.9
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 5.3e-11 70.9 73 53.4
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 1.5e-10 69.3 82 48.8
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 1.5e-10 69.3 66 63.6
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 2.0e-10 68.9 71 62.0
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 2.6e-10 68.6 69 55.1
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 4.5e-10 67.8 73 54.8
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 4.5e-10 67.8 68 60.3
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 5.8e-10 67.4 74 47.3
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 7.6e-10 67.0 74 52.7
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 7.6e-10 67.0 69 56.5
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 7.6e-10 67.0 82 47.6
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 2.9e-09 65.1 73 49.3
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 5.0e-09 64.3 71 56.3
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 6.5e-09 63.9 66 56.1
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 6.5e-09 63.9 71 52.1
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 1.1e-08 63.2 65 56.9
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 1.1e-08 63.2 65 56.9
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 1.1e-08 63.2 65 56.9
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 1.1e-08 63.2 70 45.7
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.1e-08 63.2 66 50.0
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.4e-08 62.8 65 53.8
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 1.4e-08 62.8 65 55.4
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 1.4e-08 62.8 66 53.0
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 1.9e-08 62.4 68 55.9
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 1.9e-08 62.4 73 52.1
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 2.5e-08 62.0 64 51.6
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 2.5e-08 62.0 79 46.8
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 2.5e-08 62.0 83 45.8
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 2.5e-08 62.0 76 43.4
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 3.2e-08 61.6 69 52.2
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 3.2e-08 61.6 69 50.7
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 3.2e-08 61.6 69 50.7
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 3.2e-08 61.6 69 52.2
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 4.2e-08 61.2 68 52.9
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 4.2e-08 61.2 68 52.9
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 4.2e-08 61.2 64 56.2
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 4.2e-08 61.2 66 53.0
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 4.2e-08 61.2 73 45.2
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 5.5e-08 60.8 72 48.6
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 5.5e-08 60.8 78 48.7
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 5.5e-08 60.8 66 51.5
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 5.5e-08 60.8 68 54.4
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 5.5e-08 60.8 66 56.1
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 5.5e-08 60.8 70 44.3
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 5.5e-08 60.8 69 53.6
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 7.1e-08 60.5 77 53.2
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 7.1e-08 60.5 69 50.7
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 7.1e-08 60.5 77 48.1
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 7.1e-08 60.5 67 52.2
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 7.1e-08 60.5 67 52.2
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 9.3e-08 60.1 67 53.7
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 9.3e-08 60.1 76 50.0
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 9.3e-08 60.1 64 56.2
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 9.3e-08 60.1 77 44.2
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 1.2e-07 59.7 69 49.3
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.2e-07 59.7 64 56.2
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.6e-07 59.3 64 56.2
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 1.6e-07 59.3 64 53.1
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 2.1e-07 58.9 64 51.6
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 2.1e-07 58.9 76 46.1
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 3.5e-07 58.2 69 49.3
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 3.5e-07 58.2 66 48.5
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 3.5e-07 58.2 67 50.7
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 3.5e-07 58.2 79 40.5
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 4.6e-07 57.8 71 49.3
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 7.9e-07 57.0 69 47.8
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 7.9e-07 57.0 77 41.6
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 1.0e-06 56.6 69 47.8
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 1.3e-06 56.2 71 42.3
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 1.3e-06 56.2 64 45.3
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 1.8e-06 55.8 71 45.1
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 3.0e-06 55.1 67 47.8
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 3.0e-06 55.1 73 46.6
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 5.1e-06 54.3 71 47.9
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 5.1e-06 54.3 66 50.0
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 6.7e-06 53.9 64 48.4
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 6.7e-06 53.9 76 38.2


User provided reference genes

Program Settings