Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044889 Camellia sinensis var. sinensis HOM05D008778 ORTHO05D003639 0.0e+00 1406.7 742 100.0
Peaxi162Scf00820g00119 Petunia axillaris HOM05D008778 ORTHO05D003639 7.2e-83 312.8 375 45.9
Nitab4.5_0001698g0060 Nicotiana tabacum HOM05D008778 ORTHO05D003639 4.9e-79 300.1 395 42.5
Peaxi162Scf00820g00117 Petunia axillaris HOM05D008778 ORTHO05D003639 1.2e-74 285.4 381 41.5
Sopen00g002430 Solanum pennellii HOM05D008778 ORTHO05D003639 4.6e-69 266.9 338 42.0
Nitab4.5_0001698g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 5.9e-69 266.5 777 30.4
Sopen00g007290 Solanum pennellii HOM05D008778 ORTHO05D003639 3.9e-68 263.8 338 41.7
Solyc05g010817.1 Solanum lycopersicum HOM05D008778 ORTHO05D003639 1.5e-67 261.9 338 41.1
Nitab4.5_0001698g0040 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.4e-65 255.4 523 36.1
Nitab4.5_0000663g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.8e-65 255.0 778 29.7
Nitab4.5_0000663g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.2e-64 252.3 763 30.3
Sopen09g003880 Solanum pennellii HOM05D008778 ORTHO05D003639 1.5e-64 251.9 795 30.4
PGSC0003DMG400002681 Solanum tuberosum HOM05D008778 ORTHO05D003639 1.3e-63 248.8 783 30.0
Sopen09g003890 Solanum pennellii HOM05D000006 ORTHO05D000001 2.6e-56 224.6 303 43.2
Peaxi162Scf00169g01112 Petunia axillaris HOM05D008778 ORTHO05D003639 6.4e-55 219.9 271 45.8
Nitab4.5_0007634g0020 Nicotiana tabacum HOM05D008778 ORTHO05D003639 7.1e-54 216.5 261 47.9
Peaxi162Scf00820g00045 Petunia axillaris HOM05D008778 ORTHO05D003639 4.6e-53 213.8 776 27.6
Cc00_g19240 Coffea canephora HOM05D009149 ORTHO05D003639 8.6e-52 209.5 383 36.0
Peaxi162Scf00820g00019 Petunia axillaris HOM05D008778 ORTHO05D003639 4.3e-43 180.6 327 38.2
RcHm_v2.0_Chr5g0049171 Rosa chinensis HOM05D016656 ORTHO05D003639 1.2e-37 162.5 407 29.5
FvH4_3g26742 Fragaria vesca HOM05D016656 ORTHO05D003639 1.3e-36 159.1 369 30.4
Nitab4.5_0006587g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 3.6e-34 151.0 375 31.2
FvH4_5g16044 Fragaria vesca HOM05D060084 ORTHO05D046536 8.1e-34 149.8 294 32.7
QL01p013702 Quercus lobata HOM05D009149 ORTHO05D003639 2.9e-31 141.4 379 28.2
RcHm_v2.0_Chr2g0131351 Rosa chinensis HOM05D009149 ORTHO05D003639 3.2e-30 137.9 335 31.0
RcHm_v2.0_Chr2g0105541 Rosa chinensis HOM05D009149 ORTHO05D003639 6.0e-29 133.7 372 29.6
RcHm_v2.0_Chr1g0350201 Rosa chinensis HOM05D009149 ORTHO05D003639 1.0e-28 132.9 363 29.5
CSS0041949 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 1.3e-28 132.5 448 29.0
RcHm_v2.0_Chr7g0194611 Rosa chinensis HOM05D009149 ORTHO05D003639 8.7e-28 129.8 436 27.5
RcHm_v2.0_Chr6g0291271 Rosa chinensis HOM05D009149 ORTHO05D003639 3.3e-27 127.9 360 28.9
Dinv06719 Davidia involucrata HOM05D039347 ORTHO05D025265 3.6e-26 124.4 195 37.9
FAN25G0588 Fragaria x ananassa HOM05D016656 ORTHO05D003639 8.1e-26 123.2 224 34.4
RcHm_v2.0_Chr3g0493631 Rosa chinensis HOM05D009149 ORTHO05D003639 8.1e-26 123.2 371 28.6
RcHm_v2.0_Chr2g0142701 Rosa chinensis HOM05D008702 ORTHO05D003639 1.2e-24 119.4 362 30.1
RcHm_v2.0_Chr2g0121071 Rosa chinensis HOM05D008702 ORTHO05D003639 1.5e-24 119.0 476 27.5
RcHm_v2.0_Chr4g0410321 Rosa chinensis HOM05D009149 ORTHO05D003639 3.4e-24 117.9 325 29.5
Sabra13G0012400 Salix brachista HOM05D020966 ORTHO05D010251 7.6e-24 116.7 331 28.1
Oeu009347.1 Olea europaea HOM05D007843 ORTHO05D003639 1.1e-22 112.8 377 29.7
RcHm_v2.0_Chr2g0138191 Rosa chinensis HOM05D008702 ORTHO05D003639 1.6e-21 109.0 476 26.9
Oeu018520.1 Olea europaea HOM05D007843 ORTHO05D003639 4.6e-21 107.5 299 31.4
Oeu030519.2 Olea europaea HOM05D007843 ORTHO05D003639 4.6e-21 107.5 358 29.6
Oeu001108.1 Olea europaea HOM05D007843 ORTHO05D003639 6.0e-21 107.1 413 27.8
Oeu050487.1 Olea europaea HOM05D007843 ORTHO05D003639 1.8e-20 105.5 400 28.5
FvH4_4g18552 Fragaria vesca HOM05D009149 ORTHO05D003639 5.1e-20 104.0 214 34.6
Oeu026206.1 Olea europaea HOM05D007843 ORTHO05D003639 5.1e-20 104.0 331 29.0
RcHm_v2.0_Chr2g0116581 Rosa chinensis HOM05D008702 ORTHO05D003639 5.1e-20 104.0 804 23.4
Oeu019035.1 Olea europaea HOM05D007843 ORTHO05D003639 8.7e-20 103.2 360 28.6
Oeu038439.1 Olea europaea HOM05D007843 ORTHO05D003639 8.7e-20 103.2 383 27.2
Oeu026044.1 Olea europaea HOM05D007843 ORTHO05D003639 2.5e-19 101.7 391 27.6
Oeu063102.1 Olea europaea HOM05D007843 ORTHO05D003639 2.5e-19 101.7 317 29.3
Oeu056684.1 Olea europaea HOM05D007843 ORTHO05D003639 3.3e-19 101.3 328 28.4
Oeu062982.1 Olea europaea HOM05D007843 ORTHO05D003639 1.6e-18 99.0 388 27.6
Oeu040933.1 Olea europaea HOM05D007843 ORTHO05D003639 2.1e-18 98.6 314 29.6
Oeu033711.1 Olea europaea HOM05D007843 ORTHO05D003639 4.8e-18 97.4 390 27.7
Oeu043087.1 Olea europaea HOM05D007843 ORTHO05D003639 4.8e-18 97.4 299 28.4
Oeu063182.1 Olea europaea HOM05D007843 ORTHO05D003639 4.8e-18 97.4 340 27.9
CSS0049410 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 1.1e-17 96.3 235 33.6
Oeu054401.1 Olea europaea HOM05D007843 ORTHO05D003639 1.4e-17 95.9 425 28.0
CSS0017117 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 2.4e-17 95.1 233 32.6
Oeu021877.1 Olea europaea HOM05D007843 ORTHO05D003639 3.1e-17 94.7 414 27.1
RcHm_v2.0_Chr2g0152981 Rosa chinensis HOM05D008702 ORTHO05D003639 4.0e-17 94.4 802 23.6
RcHm_v2.0_Chr5g0076791 Rosa chinensis HOM05D025191 ORTHO05D026112 5.3e-17 94.0 283 30.7
Oeu051913.1 Olea europaea HOM05D007843 ORTHO05D003639 9.0e-17 93.2 412 25.7
Oeu013418.1 Olea europaea HOM05D007843 ORTHO05D003639 1.2e-16 92.8 378 26.2
CSS0022979 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 3.4e-16 91.3 235 32.3
Oeu026105.1 Olea europaea HOM05D007843 ORTHO05D003639 7.6e-16 90.1 272 30.9
FvH4_1g29795 Fragaria vesca HOM05D009149 ORTHO05D003639 1.0e-15 89.7 167 36.5
Oeu002287.1 Olea europaea HOM05D007843 ORTHO05D003639 1.7e-15 89.0 205 32.2
RcHm_v2.0_Chr4g0419521 Rosa chinensis HOM05D009149 ORTHO05D003639 1.7e-15 89.0 168 34.5
FAN04G0614 Fragaria x ananassa HOM05D008702 ORTHO05D003639 2.2e-15 88.6 189 31.7
Oeu044673.1 Olea europaea HOM05D007843 ORTHO05D003639 3.8e-15 87.8 278 28.4
Oeu057837.1 Olea europaea HOM05D007843 ORTHO05D003639 6.5e-15 87.0 653 24.7
Oeu040104.1 Olea europaea HOM05D007843 ORTHO05D003639 1.4e-14 85.9 273 29.3
arahy.Tifrunner.gnm1.ann1.3479NA Arachis hypogaea HOM05D018927 ORTHO05D003639 1.9e-14 85.5 147 36.1
CSS0024724 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 1.9e-14 85.5 347 26.8
RcHm_v2.0_Chr1g0320711 Rosa chinensis HOM05D008702 ORTHO05D003639 2.5e-14 85.1 179 34.6
Oeu064491.1 Olea europaea HOM05D007843 ORTHO05D003639 2.7e-13 81.6 209 32.5
CSS0004912 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 1.8e-12 79.0 532 23.7
arahy.Tifrunner.gnm1.ann1.CEH37P Arachis hypogaea HOM05D007843 ORTHO05D003639 3.0e-12 78.2 139 33.1
AUR62022070 Chenopodium quinoa HOM05D020966 ORTHO05D023391 6.7e-12 77.0 329 27.7
Prupe.6G164100 Prunus persica HOM05D008702 ORTHO05D003639 2.5e-11 75.1 200 33.0
AUR62009156 Chenopodium quinoa HOM05D020966 ORTHO05D023391 4.3e-11 74.3 429 24.7
Actinidia35333 Actinidia chinensis HOM05D001371 ORTHO05D001319 1.6e-10 72.4 361 26.3
Sabra16G0286400 Salix brachista HOM05D001371 ORTHO05D001319 1.6e-10 72.4 265 26.0
Oeu043231.1 Olea europaea HOM05D007843 ORTHO05D003639 2.8e-10 71.6 165 32.7
Oeu052606.1 Olea europaea HOM05D007843 ORTHO05D003639 2.8e-10 71.6 147 32.7
Oeu030161.1 Olea europaea HOM05D007843 ORTHO05D003639 4.8e-10 70.9 174 32.2
CAN.G824.7 Capsicum annuum HOM05D008778 ORTHO05D003639 6.3e-10 70.5 103 42.7
FAN21G2541 Fragaria x ananassa HOM05D024497 ORTHO05D029415 1.1e-09 69.7 124 33.9
FAN21G2888 Fragaria x ananassa HOM05D024497 ORTHO05D029415 1.1e-09 69.7 124 33.9
Nn1g03577 Nelumbo nucifera HOM05D001371 ORTHO05D001319 1.1e-09 69.7 296 27.0
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 1.4e-09 69.3 228 30.3
VMungo0540G0870 Vigna mungo HOM05D001371 ORTHO05D001319 1.4e-09 69.3 337 24.9
Oeu017954.1 Olea europaea HOM05D007843 ORTHO05D003639 3.1e-09 68.2 188 30.3
COL.COLO4_35525 Corchorus olitorius HOM05D007843 ORTHO05D003639 4.1e-09 67.8 147 31.3
CSS0024032 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D000565 5.3e-09 67.4 169 30.8
FAN25G2024 Fragaria x ananassa HOM05D001371 ORTHO05D001319 5.3e-09 67.4 290 25.2
QL08p011658 Quercus lobata HOM05D001371 ORTHO05D001319 5.3e-09 67.4 232 25.9
Oeu039227.1 Olea europaea HOM05D007843 ORTHO05D003639 6.9e-09 67.0 167 31.1
COL.COLO4_09640 Corchorus olitorius HOM05D001371 ORTHO05D001319 9.0e-09 66.6 223 28.7
Oeu026052.1 Olea europaea HOM05D007843 ORTHO05D003639 9.0e-09 66.6 185 30.3
Oeu044490.3 Olea europaea HOM05D007843 ORTHO05D003639 9.0e-09 66.6 171 33.9
Rhsim06G0215800 Rhododendron simsii HOM05D001371 ORTHO05D001319 9.0e-09 66.6 219 27.9
CSS0038333 Camellia sinensis var. sinensis HOM05D001371 ORTHO05D001319 1.2e-08 66.2 224 29.5
vmacro21038 Vaccinium macrocarpon HOM05D001371 ORTHO05D001319 1.2e-08 66.2 218 28.9
AL6G29780 Arabidopsis lyrata HOM05D001371 ORTHO05D001319 1.5e-08 65.9 273 27.1
Duzib213G0305 Durio zibethinus HOM05D001371 ORTHO05D001319 1.5e-08 65.9 222 28.4
CARHR290670 Cardamine hirsuta HOM05D001371 ORTHO05D001319 2.0e-08 65.5 343 24.2
QL08p011669 Quercus lobata HOM05D001371 ORTHO05D001319 2.0e-08 65.5 223 26.5
Rhsim06G0217900 Rhododendron simsii HOM05D001371 ORTHO05D001319 2.0e-08 65.5 224 30.4
EL10Ac2g03892 Beta vulgaris HOM05D020966 ORTHO05D023391 2.6e-08 65.1 489 24.1
CSS0038284 Camellia sinensis var. sinensis HOM05D001371 ORTHO05D001319 2.6e-08 65.1 240 26.2
Os03g0565300 Oryza sativa ssp. japonica HOM05D001371 ORTHO05D001319 2.6e-08 65.1 318 24.2
Rhsim06G0215900 Rhododendron simsii HOM05D001371 ORTHO05D001319 3.4e-08 64.7 287 25.4
Ah.11g044760 Amaranthus hybridus HOM05D020966 ORTHO05D023391 4.5e-08 64.3 324 26.2
arahy.Tifrunner.gnm1.ann1.8YAR3M Arachis hypogaea HOM05D018927 ORTHO05D003639 4.5e-08 64.3 98 39.8
FvH4_2g35573 Fragaria vesca HOM05D009149 ORTHO05D003639 4.5e-08 64.3 75 42.7
vmacro11736 Vaccinium macrocarpon HOM05D001371 ORTHO05D001319 4.5e-08 64.3 158 32.3
CSS0044261 Camellia sinensis var. sinensis HOM05D013673 ORTHO05D015012 5.9e-08 63.9 169 30.2
FAN11G0446 Fragaria x ananassa HOM05D001371 ORTHO05D001319 5.9e-08 63.9 290 24.8
CARHR041490 Cardamine hirsuta HOM05D001371 ORTHO05D001319 7.6e-08 63.5 308 27.3
Rhsim06G0216000 Rhododendron simsii HOM05D001371 ORTHO05D001319 7.6e-08 63.5 422 23.5
Sc07g0004870 Simmondsia chinensis HOM05D007912 ORTHO05D010251 7.6e-08 63.5 89 36.0
BcaB07g33607 Brassica carinata HOM05D001371 ORTHO05D001319 1.0e-07 63.2 230 26.1
RcHm_v2.0_Chr3g0456191 Rosa chinensis HOM05D009149 ORTHO05D003639 1.0e-07 63.2 127 31.5
Duzib248G0853 Durio zibethinus HOM05D001371 ORTHO05D001319 1.3e-07 62.8 140 34.3
vmacro11737 Vaccinium macrocarpon HOM05D001371 ORTHO05D001319 1.7e-07 62.4 219 26.5
Prupe.4G209800 Prunus persica HOM05D001371 ORTHO05D001319 2.9e-07 61.6 164 30.5
Aqoxy7G03260 Aquilegia oxysepala HOM05D001371 ORTHO05D001319 3.8e-07 61.2 149 33.6
AL1G58510 Arabidopsis lyrata HOM05D001371 ORTHO05D001319 3.8e-07 61.2 227 27.3
CARHR041690 Cardamine hirsuta HOM05D001371 ORTHO05D001319 3.8e-07 61.2 364 26.1
AUR62020488 Chenopodium quinoa HOM05D001371 ORTHO05D001319 3.8e-07 61.2 98 40.8
RcHm_v2.0_Chr5g0038741 Rosa chinensis HOM05D001371 ORTHO05D001319 3.8e-07 61.2 234 27.8
MSTRG.11923 Avicennia marina HOM05D001371 ORTHO05D001319 5.0e-07 60.8 237 27.4
FAN16G0492 Fragaria x ananassa HOM05D001371 ORTHO05D001319 5.0e-07 60.8 259 23.9
vmacro00629 Vaccinium macrocarpon HOM05D001371 ORTHO05D001319 5.0e-07 60.8 95 41.1
BraA06t23487Z Brassica rapa HOM05D001371 ORTHO05D001319 6.5e-07 60.5 271 25.5
AUR62015730 Chenopodium quinoa HOM05D001371 ORTHO05D001319 8.4e-07 60.1 229 27.5
Haze_09654 Corylus avellana HOM05D001371 ORTHO05D001319 8.4e-07 60.1 231 28.6
FvH4_4g05271 Fragaria vesca HOM05D019635 ORTHO05D029381 8.4e-07 60.1 333 25.5
Gorai.005G249100 Gossypium raimondii HOM05D001371 ORTHO05D001319 8.4e-07 60.1 272 23.9
AT1G50820 Arabidopsis thaliana HOM05D001371 ORTHO05D001319 1.4e-06 59.3 226 27.4
BcaC08g43256 Brassica carinata HOM05D001371 ORTHO05D001319 1.4e-06 59.3 338 24.3
C06p06020 Brassica napus HOM05D001371 ORTHO05D001319 1.4e-06 59.3 338 24.3
BolC6t35715H Brassica oleracea HOM05D001371 ORTHO05D001319 1.4e-06 59.3 338 24.3
CSS0038691 Camellia sinensis var. sinensis HOM05D013673 ORTHO05D015012 1.4e-06 59.3 155 31.6
Duzib132G0682 Durio zibethinus HOM05D001371 ORTHO05D001319 1.4e-06 59.3 140 30.7
Rhsim06G0215500 Rhododendron simsii HOM05D001371 ORTHO05D001319 1.4e-06 59.3 224 25.9
Rhsim09G0022000 Rhododendron simsii HOM05D001371 ORTHO05D001319 1.4e-06 59.3 91 38.5
RcHm_v2.0_Chr5g0038361 Rosa chinensis HOM05D001371 ORTHO05D001319 1.4e-06 59.3 231 27.7
AUR62020479 Chenopodium quinoa HOM05D001371 ORTHO05D001319 1.9e-06 58.9 232 28.0
Duzib052G0957 Durio zibethinus HOM05D001371 ORTHO05D001319 1.9e-06 58.9 140 31.4
QL08p011750 Quercus lobata HOM05D001371 ORTHO05D001319 1.9e-06 58.9 237 24.5
BcaB04g18353 Brassica carinata HOM05D001371 ORTHO05D001319 2.5e-06 58.5 269 24.9
COL.COLO4_10613 Corchorus olitorius HOM05D001371 ORTHO05D001319 2.5e-06 58.5 157 31.2
Thhalv10012297m.g Eutrema salsugineum HOM05D001371 ORTHO05D001319 2.5e-06 58.5 228 28.5
FvH4_3g22270 Fragaria vesca HOM05D001371 ORTHO05D001319 2.5e-06 58.5 223 26.5
RcHm_v2.0_Chr5g0038381 Rosa chinensis HOM05D001371 ORTHO05D001319 2.5e-06 58.5 337 22.3
Solyc09g009160.3 Solanum lycopersicum HOM05D008778 ORTHO05D003639 2.5e-06 58.5 511 22.9
AT4G16050 Arabidopsis thaliana HOM05D001371 ORTHO05D001319 3.2e-06 58.2 347 24.5
BcaC01g01280 Brassica carinata HOM05D001371 ORTHO05D001319 3.2e-06 58.2 216 28.7
C03p90170 Brassica napus HOM05D001371 ORTHO05D001319 3.2e-06 58.2 216 28.7
BolC3t21339H Brassica oleracea HOM05D001371 ORTHO05D001319 3.2e-06 58.2 216 28.7
arahy.Tifrunner.gnm1.ann1.7RZ9ZD Arachis hypogaea HOM05D001371 ORTHO05D001319 4.2e-06 57.8 232 25.9
A05p10170 Brassica napus HOM05D001371 ORTHO05D001319 4.2e-06 57.8 397 23.4
C06p06120 Brassica napus HOM05D001371 ORTHO05D001319 4.2e-06 57.8 262 25.2
BolC6t35725H Brassica oleracea HOM05D001371 ORTHO05D001319 4.2e-06 57.8 262 25.2
BraA05t19958Z Brassica rapa HOM05D001371 ORTHO05D001319 4.2e-06 57.8 397 23.4
QL08p011743 Quercus lobata HOM05D001371 ORTHO05D001319 4.2e-06 57.8 262 25.2
Rhsim09G0022300 Rhododendron simsii HOM05D001371 ORTHO05D001319 4.2e-06 57.8 100 40.0
RhsimUnG0223800 Rhododendron simsii HOM05D001371 ORTHO05D001319 4.2e-06 57.8 100 40.0
CSS0017543 Camellia sinensis var. sinensis HOM05D013673 ORTHO05D015012 5.5e-06 57.4 163 30.1
arahy.Tifrunner.gnm1.ann1.ZJK6D8 Arachis hypogaea HOM05D001371 ORTHO05D001319 7.2e-06 57.0 232 25.9
AUR62020483 Chenopodium quinoa HOM05D001371 ORTHO05D001319 7.2e-06 57.0 110 35.5
COL.COLO4_09639 Corchorus olitorius HOM05D001371 ORTHO05D001319 7.2e-06 57.0 99 37.4
ECA236G3969 Erigeron canadensis HOM05D001371 ORTHO05D001319 7.2e-06 57.0 225 24.9
TAR624G0374 Trochodendron aralioides HOM05D001371 ORTHO05D001319 7.2e-06 57.0 220 26.8
arahy.Tifrunner.gnm1.ann1.YI8NBA Arachis hypogaea HOM05D018927 ORTHO05D003639 9.3e-06 56.6 213 25.8
CSS0045249 Camellia sinensis var. sinensis HOM05D013673 ORTHO05D015012 9.3e-06 56.6 157 32.5
CARHR040870 Cardamine hirsuta HOM05D001371 ORTHO05D001319 9.3e-06 56.6 284 26.4
Lj1C870G3 Lonicera japonica HOM05D000134 ORTHO05D001319 9.3e-06 56.6 103 36.9


User provided reference genes

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