Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044876 Camellia sinensis var. sinensis HOM05D008307 ORTHO05D010374 0.0e+00 1222.6 636 100.0
Actinidia35796 Actinidia chinensis HOM05D008307 ORTHO05D010374 1.8e-151 540.4 804 45.5
Dinv29844 Davidia involucrata HOM05D008307 ORTHO05D010374 3.8e-133 479.6 849 40.6
Rhsim04G0177000 Rhododendron simsii HOM05D008307 ORTHO05D010374 2.4e-119 433.7 717 42.7
vmacro08510 Vaccinium macrocarpon HOM05D008307 ORTHO05D010374 1.7e-117 427.6 819 39.9
RcHm_v2.0_Chr4g0393941 Rosa chinensis HOM05D008307 ORTHO05D010374 1.7e-85 321.2 766 34.6
TAR365G0480 Trochodendron aralioides HOM05D008307 ORTHO05D010374 5.6e-84 316.2 787 33.9
QL06p018536 Quercus lobata HOM05D008307 ORTHO05D010374 2.1e-83 314.3 782 33.1
Cfa014722 Carpinus fangiana HOM05D008307 ORTHO05D010374 9.0e-82 308.9 791 33.4
Haze_11405 Corylus avellana HOM05D008307 ORTHO05D010374 5.8e-81 306.2 777 33.2
TWI73G0959 Tripterygium wilfordii HOM05D008307 ORTHO05D010374 3.2e-71 273.9 792 32.3
FAN22G1022 Fragaria x ananassa HOM05D000478 ORTHO05D010374 5.6e-68 263.1 800 30.4
FvH4_4g03920 Fragaria vesca HOM05D008307 ORTHO05D010374 7.4e-68 262.7 798 30.5
Potri.010G070001 Populus trichocarpa HOM05D008307 ORTHO05D010374 3.4e-65 253.8 739 30.0
FAN17G2370 Fragaria x ananassa HOM05D000478 ORTHO05D010374 5.8e-65 253.1 654 33.2
MD16G1220900 Malus domestica HOM05D008307 ORTHO05D010374 1.7e-64 251.5 853 30.6
DCAR_024261 Daucus carota HOM05D008307 ORTHO05D010374 1.0e-61 242.3 798 29.7
Prupe.1G041400 Prunus persica HOM05D008307 ORTHO05D010374 7.6e-57 226.1 742 29.9
DCAR_027325 Daucus carota HOM05D008307 ORTHO05D010374 1.9e-55 221.5 204 57.8
CARHR099340 Cardamine hirsuta HOM05D008307 ORTHO05D010374 2.1e-54 218.0 211 52.1
PGSC0003DMG400017215 Solanum tuberosum HOM05D008307 ORTHO05D010374 2.1e-54 218.0 404 37.1
Solyc09g090290.3 Solanum lycopersicum HOM05D008307 ORTHO05D010374 5.1e-53 213.4 448 34.6
Migut.N00284 Erythranthe guttata HOM05D008307 ORTHO05D010374 6.7e-53 213.0 411 37.7
AL3G38030 Arabidopsis lyrata HOM05D008307 ORTHO05D010374 1.1e-52 212.2 211 54.0
CAN.G220.11 Capsicum annuum HOM05D008307 ORTHO05D010374 3.7e-51 207.2 366 38.8
AT3G23370 Arabidopsis thaliana HOM05D008307 ORTHO05D010374 4.8e-51 206.8 211 52.1
Aqoxy7G00920 Aquilegia oxysepala HOM05D008307 ORTHO05D010374 3.1e-50 204.1 230 48.3
Thhalv10020149m.g Eutrema salsugineum HOM05D008307 ORTHO05D010374 3.1e-50 204.1 205 52.7
THA.LOC104822237 Tarenaya hassleriana HOM05D008307 ORTHO05D010374 2.0e-49 201.4 721 28.7
Nitab4.5_0000044g0470 Nicotiana tabacum HOM05D008307 ORTHO05D010374 4.5e-49 200.3 601 32.6
Sopen09g033190 Solanum pennellii HOM05D008307 ORTHO05D010374 5.9e-49 199.9 593 30.2
A07p09070 Brassica napus HOM05D008307 ORTHO05D010374 2.2e-48 198.0 201 54.2
Nitab4.5_0007280g0010 Nicotiana tabacum HOM05D008307 ORTHO05D010374 8.5e-48 196.1 619 31.5
MBI07_g31095_MAGBIO Magnolia biondii HOM05D008307 ORTHO05D010374 1.4e-47 195.3 718 27.7
FAN12G4262 Fragaria x ananassa HOM05D000478 ORTHO05D010374 1.9e-47 194.9 613 30.8
Carub.0003s2363 Capsella rubella HOM05D008307 ORTHO05D010374 4.2e-47 193.7 211 49.8
Peaxi162Scf00041g00209 Petunia axillaris HOM05D008307 ORTHO05D010374 5.5e-47 193.4 582 31.6
C07p14040 Brassica napus HOM05D008307 ORTHO05D010374 3.6e-46 190.7 201 52.7
BcaC06g35512 Brassica carinata HOM05D008307 ORTHO05D010374 7.9e-46 189.5 201 52.7
BolC7t41901H Brassica oleracea HOM05D008307 ORTHO05D010374 7.9e-46 189.5 201 52.7
PGR031G2080 Punica granatum HOM05D008307 ORTHO05D010374 6.9e-42 176.4 676 29.4
ATR0736G143 Amborella trichopoda HOM05D008307 ORTHO05D010374 5.9e-41 173.3 707 27.2
BraA07t28701Z Brassica rapa HOM05D008307 ORTHO05D010374 5.9e-41 173.3 653 28.5
COL.COLO4_15896 Corchorus olitorius HOM05D008307 ORTHO05D010374 1.3e-40 172.2 188 52.7
SGA_v2.0_scaffold31G12662 Striga asiatica HOM05D008307 ORTHO05D010374 5.5e-39 166.8 215 47.4
SEGI_00673 Sequoiadendron giganteum HOM05D008307 ORTHO05D010374 1.2e-33 149.1 213 43.2
Cc03_g05710 Coffea canephora HOM05D008307 ORTHO05D010374 1.3e-32 145.6 133 52.6
Thecc.04G258000 Theobroma cacao HOM05D008307 ORTHO05D010374 6.7e-21 106.7 108 54.6
Cc03_g05700 Coffea canephora HOM05D008307 ORTHO05D010374 4.1e-18 97.4 83 60.2
Gorai.011G175900 Gossypium raimondii HOM05D008307 ORTHO05D010374 3.5e-17 94.4 166 38.0
SMO329G0060 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 1.0e-16 92.8 181 34.3
Gohir.D10G155880 Gossypium hirsutum HOM05D008307 ORTHO05D010374 2.2e-16 91.7 166 36.7
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 3.8e-16 90.9 150 37.3
SMO165G0083 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 8.5e-16 89.7 151 34.4
Pp3c6_16530 Physcomitrium patens HOM05D008307 ORTHO05D010374 4.0e-13 80.9 153 33.3
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 5.7e-12 77.0 148 31.8
AagrBONN_evm.TU.Sc2ySwM_369.432 Anthoceros agrestis HOM05D008307 ORTHO05D010374 1.2e-09 69.3 144 31.2
Pp3c5_17310 Physcomitrium patens HOM05D008307 ORTHO05D010374 3.5e-09 67.8 112 34.8
Mapoly0004s0145 Marchantia polymorpha HOM05D008307 ORTHO05D010374 2.3e-08 65.1 103 32.0


User provided reference genes

Program Settings