Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044873 Camellia sinensis var. sinensis HOM05D006161 ORTHO05D007483 2.2e-69 265.8 162 100.0
Rhsim05G0107700 Rhododendron simsii HOM05D006161 ORTHO05D007483 1.4e-60 236.5 146 92.5
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 3.5e-59 231.9 160 85.0
Manes.14G166201 Manihot esculenta HOM05D006161 ORTHO05D007483 3.3e-57 225.3 144 88.9
vmacro19927 Vaccinium macrocarpon HOM05D006161 ORTHO05D007483 4.3e-57 224.9 143 88.8
Dinv09035 Davidia involucrata HOM05D006161 ORTHO05D007483 2.8e-56 222.2 144 88.2
GSVIVG01003100001 Vitis vinifera HOM05D006161 ORTHO05D007483 1.8e-55 219.5 143 86.7
PGR142G0837 Punica granatum HOM05D006161 ORTHO05D007483 2.4e-55 219.2 157 79.0
Nitab4.5_0003858g0050 Nicotiana tabacum HOM05D006161 ORTHO05D007483 3.1e-55 218.8 146 84.9
Nitab4.5_0002576g0040 Nicotiana tabacum HOM05D006161 ORTHO05D007483 4.1e-55 218.4 146 84.9
arahy.Tifrunner.gnm1.ann1.6D7HHK Arachis hypogaea HOM05D006161 ORTHO05D007483 9.0e-55 217.2 149 81.9
arahy.Tifrunner.gnm1.ann1.75PVJ4 Arachis hypogaea HOM05D006161 ORTHO05D007483 9.0e-55 217.2 149 81.9
Lsat_1_v5_gn_5_107281 Lactuca sativa HOM05D006161 ORTHO05D007483 2.0e-54 216.1 143 85.3
Ciclev10029442m.g Citrus clementina HOM05D006161 ORTHO05D007483 3.4e-54 215.3 161 78.9
Prupe.8G061800 Prunus persica HOM05D006161 ORTHO05D007483 3.4e-54 215.3 143 84.6
Hund06386 Selenicereus undatus HOM05D006161 ORTHO05D007483 3.4e-54 215.3 154 81.2
TWI14G1433 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 4.5e-54 214.9 145 84.1
Peaxi162Scf00001g00019 Petunia axillaris HOM05D006161 ORTHO05D007483 5.9e-54 214.5 155 78.7
SalBow6G1080 Salvia bowleyana HOM05D006161 ORTHO05D007483 7.6e-54 214.2 143 84.6
SalBow6G1732 Salvia bowleyana HOM05D006161 ORTHO05D007483 7.6e-54 214.2 143 84.6
Oeu047362.1 Olea europaea HOM05D006161 ORTHO05D007483 1.0e-53 213.8 143 83.9
Atru.chr12.1730 Acer truncatum HOM05D006161 ORTHO05D007483 1.3e-53 213.4 160 77.5
MD05G1163200 Malus domestica HOM05D006161 ORTHO05D007483 1.7e-53 213.0 143 83.9
Medtr4g094242 Medicago truncatula HOM05D006161 ORTHO05D007483 1.7e-53 213.0 140 84.3
CAN.G523.74 Capsicum annuum HOM05D006161 ORTHO05D007483 2.2e-53 212.6 142 83.8
Eucgr.I02667 Eucalyptus grandis HOM05D006161 ORTHO05D007483 2.2e-53 212.6 146 82.2
Sopen01g047660 Solanum pennellii HOM05D006161 ORTHO05D007483 2.2e-53 212.6 143 84.6
RcHm_v2.0_Chr3g0485521 Rosa chinensis HOM05D006161 ORTHO05D007483 2.9e-53 212.2 142 85.2
SGA_v2.0_scaffold14G07119 Striga asiatica HOM05D006161 ORTHO05D007483 3.8e-53 211.8 144 83.3
MSTRG.20298 Avicennia marina HOM05D006161 ORTHO05D007483 5.0e-53 211.5 158 77.8
Migut.B00613 Erythranthe guttata HOM05D006161 ORTHO05D007483 5.0e-53 211.5 141 86.5
MD10G1152800 Malus domestica HOM05D006161 ORTHO05D007483 5.0e-53 211.5 143 83.2
PGSC0003DMG400012586 Solanum tuberosum HOM05D006161 ORTHO05D007483 5.0e-53 211.5 143 83.9
Potri.012G022200 Populus trichocarpa HOM05D006161 ORTHO05D007483 6.5e-53 211.1 141 84.4
FvH4_1g26050 Fragaria vesca HOM05D006161 ORTHO05D007483 1.1e-52 210.3 149 81.2
Solyc01g105130.4 Solanum lycopersicum HOM05D006161 ORTHO05D007483 1.1e-52 210.3 143 83.2
FAN26G2610 Fragaria x ananassa HOM05D006161 ORTHO05D007483 2.5e-52 209.1 143 83.2
TAR622G1105 Trochodendron aralioides HOM05D006161 ORTHO05D007483 3.2e-52 208.8 144 81.9
FAN28G0148 Fragaria x ananassa HOM05D006161 ORTHO05D007483 5.5e-52 208.0 143 82.5
MD05G1163000 Malus domestica HOM05D006161 ORTHO05D007483 7.2e-52 207.6 143 82.5
EL10Ac9g21470 Beta vulgaris HOM05D006161 ORTHO05D007483 1.2e-51 206.8 140 82.9
FAN23G0154 Fragaria x ananassa HOM05D006161 ORTHO05D007483 1.6e-51 206.5 143 81.8
FAN23G2587 Fragaria x ananassa HOM05D006161 ORTHO05D007483 1.6e-51 206.5 143 81.8
HanXRQChr10g0295861 Helianthus annuus HOM05D006161 ORTHO05D007483 1.6e-51 206.5 143 81.1
CsaV3_7G006450 Cucumis sativus L. HOM05D006161 ORTHO05D007483 2.7e-51 205.7 142 79.6
FAN19G1889 Fragaria x ananassa HOM05D006161 ORTHO05D007483 3.5e-51 205.3 143 81.8
Aqoxy3G03670 Aquilegia oxysepala HOM05D006161 ORTHO05D007483 4.6e-51 204.9 143 79.7
MSTRG.16580 Avicennia marina HOM05D006161 ORTHO05D007483 4.6e-51 204.9 143 81.1
CANSAT11G1086 Cannabis sativa HOM05D006161 ORTHO05D007483 4.6e-51 204.9 143 80.4
Psat7g098400 Pisum sativum HOM05D006161 ORTHO05D007483 4.6e-51 204.9 139 82.7
MELO3C018647.2 Cucumis melo HOM05D006161 ORTHO05D007483 6.1e-51 204.5 142 79.6
Sed0024565 Sechium edule HOM05D006161 ORTHO05D007483 7.9e-51 204.1 142 79.6
Sc18g0006920 Simmondsia chinensis HOM05D006161 ORTHO05D007483 1.0e-50 203.8 140 80.7
AUR62013116 Chenopodium quinoa HOM05D006161 ORTHO05D007483 1.8e-50 203.0 140 80.7
Sabra15G0004000 Salix brachista HOM05D006161 ORTHO05D007483 3.0e-50 202.2 161 75.2
Lalb_Chr10g0097811 Lupinus albus HOM05D006161 ORTHO05D007483 3.9e-50 201.8 147 75.5
THA.LOC104799966 Tarenaya hassleriana HOM05D006161 ORTHO05D007483 5.1e-50 201.4 140 80.7
Carub.0008s2497 Capsella rubella HOM05D006161 ORTHO05D007483 6.7e-50 201.1 141 78.7
Aa31LG1G17750 Aethionema arabicum HOM05D006161 ORTHO05D007483 8.7e-50 200.7 140 79.3
BolC9t53879H Brassica oleracea HOM05D006161 ORTHO05D007483 8.7e-50 200.7 140 79.3
PSO017G6730 Papaver somniferum HOM05D006161 ORTHO05D007483 1.5e-49 199.9 142 78.9
PSO478G0074 Papaver somniferum HOM05D006161 ORTHO05D007483 1.5e-49 199.9 142 78.9
BcaB02g09779 Brassica carinata HOM05D006161 ORTHO05D007483 1.9e-49 199.5 140 79.3
C03p62070 Brassica napus HOM05D006161 ORTHO05D007483 1.9e-49 199.5 140 78.6
BolC3t18468H Brassica oleracea HOM05D006161 ORTHO05D007483 1.9e-49 199.5 140 79.3
ECA234G1571 Erigeron canadensis HOM05D006161 ORTHO05D007483 1.9e-49 199.5 142 78.2
Thhalv10005060m.g Eutrema salsugineum HOM05D006161 ORTHO05D007483 1.9e-49 199.5 140 79.3
C09p09680 Brassica napus HOM05D006161 ORTHO05D007483 2.5e-49 199.1 140 78.6
Lj5P240T24 Lonicera japonica HOM05D006161 ORTHO05D007483 2.5e-49 199.1 129 87.6
MD00G1096800 Malus domestica HOM05D006161 ORTHO05D007483 2.5e-49 199.1 144 80.6
VMungo0251G3203 Vigna mungo HOM05D006161 ORTHO05D007483 2.5e-49 199.1 145 77.2
AT5G64180 Arabidopsis thaliana HOM05D006161 ORTHO05D007483 3.3e-49 198.7 141 78.0
Glyma.05G117900 Glycine max HOM05D006161 ORTHO05D007483 3.3e-49 198.7 145 76.6
AL8G41450 Arabidopsis lyrata HOM05D006161 ORTHO05D007483 4.3e-49 198.4 141 78.7
BraA09t36505Z Brassica rapa HOM05D006161 ORTHO05D007483 4.3e-49 198.4 140 78.6
A09p08560 Brassica napus HOM05D006161 ORTHO05D007483 5.7e-49 198.0 140 78.6
Sp2g27240 Schrenkiella parvula HOM05D006161 ORTHO05D007483 1.3e-48 196.8 140 78.6
BraA06t26029Z Brassica rapa HOM05D006161 ORTHO05D007483 2.8e-48 195.7 140 78.6
Cfa005604 Carpinus fangiana HOM05D006161 ORTHO05D007483 2.8e-48 195.7 147 78.2
CARHR278090 Cardamine hirsuta HOM05D006161 ORTHO05D007483 8.2e-48 194.1 141 76.6
Glyma.08G072800 Glycine max HOM05D006161 ORTHO05D007483 1.1e-47 193.7 145 75.2
Phvul.002G208400 Phaseolus vulgaris HOM05D006161 ORTHO05D007483 1.1e-47 193.7 145 75.2
BcaC01g02675 Brassica carinata HOM05D006161 ORTHO05D007483 6.9e-47 191.0 140 77.1
ATR0177G010 Amborella trichopoda HOM05D006161 ORTHO05D007483 2.0e-46 189.5 142 72.5
SHI16526 Sapria himalayana HOM05D006161 ORTHO05D007483 3.8e-45 185.3 142 73.2
CDE04G2984 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 5.0e-45 184.9 139 73.4
Os12g0502100 Oryza sativa ssp. japonica HOM05D006161 ORTHO05D007483 5.0e-45 184.9 140 72.1
Cc02_g21600 Coffea canephora HOM05D006161 ORTHO05D007483 1.4e-44 183.3 143 76.2
Lj4g0015467 Lotus japonicus HOM05D006161 ORTHO05D007483 3.6e-43 178.7 146 71.2
ClCG09G015360 Citrullus lanatus HOM05D006161 ORTHO05D007483 5.1e-42 174.9 142 73.9
CiPaw.05G036100 Carya illinoinensis HOM05D006161 ORTHO05D007483 4.3e-41 171.8 147 70.1
unitig_8.g3487 Utricularia gibba HOM05D006161 ORTHO05D007483 1.3e-40 170.2 223 51.6
ECA236G0554 Erigeron canadensis HOM05D006161 ORTHO05D007483 2.8e-40 169.1 139 68.3
Cpa.g.sc42.64 Carica papaya HOM05D006161 ORTHO05D007483 3.7e-40 168.7 142 71.8
Actinidia00265 Actinidia chinensis HOM05D006161 ORTHO05D007483 1.1e-39 167.2 142 72.5
Nn4g23459 Nelumbo nucifera HOM05D006161 ORTHO05D007483 1.1e-39 167.2 143 71.3
A06p30900 Brassica napus HOM05D006161 ORTHO05D007483 1.8e-39 166.4 140 68.6
Lj6g0024224 Lotus japonicus HOM05D006161 ORTHO05D007483 3.4e-38 162.2 147 68.0
Haze_10694 Corylus avellana HOM05D006161 ORTHO05D007483 1.4e-36 156.8 105 85.7
QL11p020678 Quercus lobata HOM05D006161 ORTHO05D007483 2.5e-36 156.0 106 84.9
Ca_18349_v3 Cicer arietinum L. HOM05D006161 ORTHO05D007483 1.6e-35 153.3 147 63.9
CDE04G3544 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 3.6e-35 152.1 147 61.2
Mapoly0094s0011 Marchantia polymorpha HOM05D006161 ORTHO05D007483 3.9e-34 148.7 136 58.8
Sabra05G0140100 Salix brachista HOM05D006161 ORTHO05D007483 5.7e-33 144.8 118 73.7
Gohir.A12G014900 Gossypium hirsutum HOM05D006161 ORTHO05D007483 9.7e-33 144.1 146 61.6
SGA_v2.0_scaffold11G05811 Striga asiatica HOM05D006161 ORTHO05D007483 3.7e-32 142.1 107 75.7
AagrBONN_evm.TU.Sc2ySwM_117.171 Anthoceros agrestis HOM05D006161 ORTHO05D007483 6.3e-32 141.4 137 55.5
DCAR_001788 Daucus carota HOM05D006161 ORTHO05D007483 1.1e-31 140.6 106 74.5
Hma1.2p1_0704F.1_g206700 Hydrangea macrophylla HOM05D006161 ORTHO05D007483 1.4e-31 140.2 104 78.8
HPP92_024935 Vanilla planifolia HOM05D006161 ORTHO05D007483 3.1e-31 139.0 104 77.9
TWI14G1282 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 3.5e-30 135.6 166 55.4
SMO116G0092 Selaginella moellendorffii HOM05D006161 ORTHO05D007483 1.3e-29 133.7 138 51.4
Potri.015G005600 Populus trichocarpa HOM05D006161 ORTHO05D007483 8.5e-29 131.0 145 57.9
Zm00001eb409430 Zea mays HOM05D006161 ORTHO05D007483 3.2e-28 129.0 118 64.4
Duzib132G0386 Durio zibethinus HOM05D006161 ORTHO05D007483 4.2e-28 128.6 146 57.5
Zm00001eb138120 Zea mays HOM05D006161 ORTHO05D007483 7.2e-28 127.9 104 69.2
CDE07G1624 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 2.7e-27 125.9 92 78.3
Thecc.02G139200 Theobroma cacao HOM05D006161 ORTHO05D007483 1.3e-24 117.1 144 54.9
arahy.Tifrunner.gnm1.ann1.A44469 Arachis hypogaea HOM05D006161 ORTHO05D007483 2.8e-24 115.9 81 82.7
Gohir.D12G015300 Gossypium hirsutum HOM05D006161 ORTHO05D007483 1.1e-23 114.0 146 52.1
Gorai.008G015400 Gossypium raimondii HOM05D006161 ORTHO05D007483 1.1e-23 114.0 146 52.1
COL.COLO4_13985 Corchorus olitorius HOM05D006161 ORTHO05D007483 5.5e-20 101.7 126 54.8
arahy.Tifrunner.gnm1.ann1.HFW61Q Arachis hypogaea HOM05D006161 ORTHO05D007483 5.7e-17 91.7 66 75.8
Pp3c24_330 Physcomitrium patens HOM05D006161 ORTHO05D007483 2.9e-13 79.3 137 41.6
Actinidia23993 Actinidia chinensis HOM05D006161 ORTHO05D007483 7.2e-12 74.7 128 45.3
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 6.1e-11 71.6 47 80.9
CBR_g70737 Chara braunii HOM05D006161 ORTHO05D007483 2.6e-09 66.2 137 34.3
TPR.G10469 Trifolium pratense HOM05D006161 ORTHO05D007483 4.4e-09 65.5 45 68.9
VMungo0540G0821 Vigna mungo HOM05D006161 ORTHO05D007483 9.8e-09 64.3 40 80.0
Oeu011770.1 Olea europaea HOM05D004115 ORTHO05D005004 2.0e-06 56.6 42 71.4


User provided reference genes

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