Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044859 Camellia sinensis var. sinensis HOM05D007755 ORTHO05D009866 1.2e-22 109.0 55 100.0
Gohir.A05G086100 Gossypium hirsutum HOM05D007755 ORTHO05D009866 5.5e-12 73.6 45 82.2
LjContig00318g0015447 Lotus japonicus HOM05D007755 ORTHO05D009866 5.5e-12 73.6 51 78.4
PGR111G0111 Punica granatum HOM05D007755 ORTHO05D009866 7.1e-12 73.2 45 84.4
AL2G20820 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 9.3e-12 72.8 45 84.4
AL2G21330 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 9.3e-12 72.8 45 84.4
ATCG00300 Arabidopsis thaliana HOM05D007755 ORTHO05D009866 9.3e-12 72.8 45 84.4
A06p23320 Brassica napus HOM05D007755 ORTHO05D009866 9.3e-12 72.8 45 84.4
BNapus_Darmor_BZH_scaffold_287p00020 Brassica napus HOM05D007755 ORTHO05D009866 9.3e-12 72.8 45 84.4
C09p40450 Brassica napus HOM05D007755 ORTHO05D009866 9.3e-12 72.8 45 84.4
BolC7t41728H Brassica oleracea HOM05D007755 ORTHO05D009866 9.3e-12 72.8 45 84.4
BolC9t56908H Brassica oleracea HOM05D007755 ORTHO05D009866 9.3e-12 72.8 45 84.4
BolSC29t60454H Brassica oleracea HOM05D007755 ORTHO05D009866 9.3e-12 72.8 45 84.4
BolSC45t60871H Brassica oleracea HOM05D007755 ORTHO05D009866 9.3e-12 72.8 45 84.4
BolSC47t61109H Brassica oleracea HOM05D007755 ORTHO05D009866 9.3e-12 72.8 45 84.4
BolSC47t61113H Brassica oleracea HOM05D007755 ORTHO05D009866 9.3e-12 72.8 45 84.4
BraA06t25434Z Brassica rapa HOM05D007755 ORTHO05D009866 9.3e-12 72.8 45 84.4
BraSC140t45582Z Brassica rapa HOM05D007755 ORTHO05D009866 9.3e-12 72.8 45 84.4
BraSC143t45685Z Brassica rapa HOM05D007755 ORTHO05D009866 9.3e-12 72.8 45 84.4
CARHR281980 Cardamine hirsuta HOM05D007755 ORTHO05D009866 9.3e-12 72.8 45 84.4
LjContig00489g0017505 Lotus japonicus HOM05D007755 ORTHO05D009866 9.3e-12 72.8 45 84.4
Sed0002727 Sechium edule HOM05D007755 ORTHO05D009866 1.2e-11 72.4 45 84.4
Sed0008331 Sechium edule HOM05D007755 ORTHO05D009866 1.2e-11 72.4 45 84.4
Sed0012017 Sechium edule HOM05D007755 ORTHO05D009866 1.2e-11 72.4 45 84.4
Sed0014140 Sechium edule HOM05D007755 ORTHO05D009866 1.2e-11 72.4 45 84.4
Sed0021343 Sechium edule HOM05D007755 ORTHO05D009866 1.2e-11 72.4 45 84.4
Sed0024615 Sechium edule HOM05D007755 ORTHO05D009866 1.2e-11 72.4 45 84.4
Potri.013G142548 Populus trichocarpa HOM05D007755 ORTHO05D009866 1.6e-11 72.0 45 82.2
Thhalv10011069m.g Eutrema salsugineum HOM05D007755 ORTHO05D009866 2.1e-11 71.6 45 82.2
Medtr8g056780 Medicago truncatula HOM05D007755 ORTHO05D009866 2.1e-11 71.6 45 82.2
CAN.G201.1 Capsicum annuum HOM05D007755 ORTHO05D009866 3.5e-11 70.9 45 80.0
Migut.J01358 Erythranthe guttata HOM05D007755 ORTHO05D009866 3.5e-11 70.9 45 80.0
HanXRQChr00c0272g0573011 Helianthus annuus HOM05D007755 ORTHO05D009866 3.5e-11 70.9 45 80.0
HanXRQChr00c0300g0573261 Helianthus annuus HOM05D007755 ORTHO05D009866 3.5e-11 70.9 45 80.0
HanXRQChr00c0313g0573411 Helianthus annuus HOM05D007755 ORTHO05D009866 3.5e-11 70.9 45 80.0
HanXRQChr00c0920g0577881 Helianthus annuus HOM05D007755 ORTHO05D009866 3.5e-11 70.9 45 80.0
HanXRQChr02g0041661 Helianthus annuus HOM05D007755 ORTHO05D009866 3.5e-11 70.9 45 80.0
HanXRQChr02g0044811 Helianthus annuus HOM05D007755 ORTHO05D009866 3.5e-11 70.9 45 80.0
HanXRQChr04g0099331 Helianthus annuus HOM05D007755 ORTHO05D009866 3.5e-11 70.9 45 80.0
HanXRQChr07g0201081 Helianthus annuus HOM05D007755 ORTHO05D009866 3.5e-11 70.9 45 80.0
HanXRQChr08g0210241 Helianthus annuus HOM05D007755 ORTHO05D009866 3.5e-11 70.9 45 80.0
HanXRQChr10g0282461 Helianthus annuus HOM05D007755 ORTHO05D009866 3.5e-11 70.9 45 80.0
HanXRQChr11g0326681 Helianthus annuus HOM05D007755 ORTHO05D009866 3.5e-11 70.9 45 80.0
HanXRQCPg0579881 Helianthus annuus HOM05D007755 ORTHO05D009866 3.5e-11 70.9 45 80.0
DCAR_032481 Daucus carota HOM05D007755 ORTHO05D009866 4.6e-11 70.5 45 80.0
Gohir.D06G164048 Gossypium hirsutum HOM05D007755 ORTHO05D009866 4.6e-11 70.5 45 80.0
Gohir.D08G128420 Gossypium hirsutum HOM05D007755 ORTHO05D009866 4.6e-11 70.5 45 80.0
Nn020s41507 Nelumbo nucifera HOM05D007755 ORTHO05D009866 4.6e-11 70.5 45 80.0
Nn082s42679 Nelumbo nucifera HOM05D007755 ORTHO05D009866 4.6e-11 70.5 45 80.0
Nn287s46147 Nelumbo nucifera HOM05D007755 ORTHO05D009866 4.6e-11 70.5 45 80.0
Nn3g19094 Nelumbo nucifera HOM05D007755 ORTHO05D009866 4.6e-11 70.5 45 80.0
CAN.G679.8 Capsicum annuum HOM05D007755 ORTHO05D009866 6.1e-11 70.1 45 80.0
PSO548G0042 Papaver somniferum HOM05D007755 ORTHO05D009866 6.1e-11 70.1 45 82.2
Solyc01g102770.1 Solanum lycopersicum HOM05D007755 ORTHO05D009866 6.1e-11 70.1 45 80.0
CsaV3_5G013710 Cucumis sativus L. HOM05D007755 ORTHO05D009866 7.9e-11 69.7 50 74.0
Gohir.1Z049880 Gossypium hirsutum HOM05D007755 ORTHO05D009866 1.0e-10 69.3 45 77.8
HanXRQChr05g0151401 Helianthus annuus HOM05D007755 ORTHO05D009866 1.0e-10 69.3 45 77.8
Migut.D01347 Erythranthe guttata HOM05D007755 ORTHO05D009866 1.3e-10 68.9 41 85.4
Migut.M00584 Erythranthe guttata HOM05D007755 ORTHO05D009866 1.3e-10 68.9 45 77.8
Gohir.A12G121501 Gossypium hirsutum HOM05D007755 ORTHO05D009866 1.3e-10 68.9 45 77.8
BraSC179t45795Z Brassica rapa HOM05D007755 ORTHO05D009866 1.8e-10 68.6 45 82.2
RcHm_v2.0_Chr3g0491831 Rosa chinensis HOM05D007755 ORTHO05D009866 1.8e-10 68.6 45 80.0
RcHm_v2.0_CPg0502301 Rosa chinensis HOM05D007755 ORTHO05D009866 1.8e-10 68.6 45 80.0
Gohir.A01G164800 Gossypium hirsutum HOM05D007755 ORTHO05D009866 3.9e-10 67.4 45 75.6
Gorai.003G070800 Gossypium raimondii HOM05D007755 ORTHO05D009866 3.9e-10 67.4 45 75.6
Solyc11g050770.1 Solanum lycopersicum HOM05D007755 ORTHO05D009866 3.9e-10 67.4 45 75.6
Gohir.A12G076900 Gossypium hirsutum HOM05D007755 ORTHO05D009866 5.1e-10 67.0 45 77.8
Prupe.2G104500 Prunus persica HOM05D007755 ORTHO05D009866 5.1e-10 67.0 45 77.8
Glyma.08G363500 Glycine max HOM05D007755 ORTHO05D009866 1.9e-09 65.1 45 75.6
Glyma.01G095900 Glycine max HOM05D007755 ORTHO05D009866 2.5e-09 64.7 45 75.6
HanXRQChr11g0330571 Helianthus annuus HOM05D007755 ORTHO05D009866 2.5e-09 64.7 45 75.6
Phvul.010G069000 Phaseolus vulgaris HOM05D007755 ORTHO05D009866 2.5e-09 64.7 45 71.1
MD11G1068400 Malus domestica HOM05D007755 ORTHO05D009866 3.3e-09 64.3 45 77.8
Hma1.2p1_0149F.1_g066480 Hydrangea macrophylla HOM05D007755 ORTHO05D009866 5.7e-09 63.5 45 73.3
AL2G25590 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 1.3e-08 62.4 51 72.5
BolSC44t60853H Brassica oleracea HOM05D007755 ORTHO05D009866 1.3e-08 62.4 41 75.6
BolSC49t61194H Brassica oleracea HOM05D007755 ORTHO05D009866 1.3e-08 62.4 41 75.6
Os12g0504050 Oryza sativa ssp. japonica HOM05D007755 ORTHO05D009866 1.6e-08 62.0 45 75.6
Eucgr.B02051 Eucalyptus grandis HOM05D007755 ORTHO05D009866 2.8e-08 61.2 45 75.6
Solyc10g017950.2 Solanum lycopersicum HOM05D007755 ORTHO05D009866 6.3e-08 60.1 45 71.1
EL10As15g24140 Beta vulgaris HOM05D000890 ORTHO05D009866 5.3e-07 57.0 41 73.2


User provided reference genes

Program Settings