Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.7e-198 696.0 421 100.0
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 3.6e-172 608.6 423 90.8
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 4.2e-104 382.5 420 63.8
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 2.0e-98 363.6 448 58.5
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.3e-97 360.9 448 58.3
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 2.7e-95 353.2 427 61.4
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 3.0e-86 323.2 448 48.7
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.1e-83 313.2 416 51.4
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.6e-82 310.8 457 47.3
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.7e-81 307.4 456 46.3
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 4.2e-80 302.8 428 49.3
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 1.6e-79 300.8 444 50.9
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 8.0e-79 298.5 436 47.2
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 3.0e-78 296.6 434 48.6
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.4e-77 293.1 420 51.7
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 5.7e-77 292.4 420 51.0
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 7.5e-77 292.0 419 47.7
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 1.1e-75 288.1 443 51.5
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 3.5e-74 283.1 426 46.7
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 4.5e-74 282.7 440 45.5
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 4.5e-74 282.7 456 48.9
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 2.3e-73 280.4 212 71.2
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 4.3e-72 276.2 433 46.7
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 2.1e-71 273.9 436 47.7
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 2.8e-71 273.5 423 45.4
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 4.7e-71 272.7 418 47.4
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 1.0e-70 271.6 430 47.0
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 3.0e-70 270.0 435 43.7
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 4.0e-70 269.6 424 45.5
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 4.0e-70 269.6 421 47.7
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 5.2e-70 269.2 436 45.9
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 6.8e-70 268.9 424 43.9
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 5.8e-69 265.8 211 69.2
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 1.3e-68 264.6 476 49.4
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 2.2e-68 263.8 417 45.8
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 2.9e-68 263.5 212 66.5
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 8.3e-68 261.9 436 43.8
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 1.4e-67 261.2 435 45.1
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 1.4e-67 261.2 434 45.4
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 1.9e-67 260.8 435 45.1
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 1.9e-67 260.8 436 44.0
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 1.2e-66 258.1 428 43.2
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 3.5e-66 256.5 206 68.0
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 7.8e-66 255.4 417 43.6
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 3.9e-65 253.1 418 45.7
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 3.9e-65 253.1 425 44.5
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 5.0e-65 252.7 421 44.2
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 1.5e-64 251.1 428 51.2
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 1.9e-64 250.8 233 61.4
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 3.3e-64 250.0 420 43.3
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 7.3e-64 248.8 418 42.3
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 1.6e-63 247.7 415 47.7
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 3.6e-63 246.5 427 43.8
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 6.2e-63 245.7 420 43.3
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 6.2e-63 245.7 442 41.0
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.1e-62 245.0 206 64.1
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 1.8e-62 244.2 433 44.1
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 2.3e-62 243.8 209 65.6
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 2.3e-62 243.8 401 44.1
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 5.2e-62 242.7 417 40.3
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 9.8e-61 238.4 603 38.8
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 2.2e-60 237.3 171 73.7
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 3.7e-60 236.5 416 45.9
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 1.9e-59 234.2 206 62.6
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 2.4e-59 233.8 205 62.9
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 9.2e-59 231.9 428 41.8
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 9.2e-59 231.9 424 40.1
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 1.6e-58 231.1 199 61.8
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 1.6e-58 231.1 213 62.4
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 6.0e-58 229.2 409 41.6
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 1.0e-57 228.4 355 47.3
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 1.7e-57 227.6 212 62.3
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 5.1e-57 226.1 431 40.4
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 8.6e-57 225.3 421 44.4
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 1.5e-56 224.6 424 39.6
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 5.6e-56 222.6 433 43.2
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 5.6e-56 222.6 428 37.9
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 9.5e-56 221.9 431 39.0
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 1.6e-55 221.1 436 39.9
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 2.1e-55 220.7 428 41.4
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 1.4e-54 218.0 417 40.8
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.2e-53 214.9 454 38.1
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.2e-53 214.9 441 38.3
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 2.6e-53 213.8 410 43.2
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 4.4e-53 213.0 205 56.1
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 7.1e-51 205.7 421 45.8
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 3.5e-50 203.4 211 53.1
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 1.7e-49 201.1 430 38.6
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 3.9e-49 199.9 435 39.3
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 8.1e-47 192.2 512 39.6
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 2.4e-46 190.7 429 37.8
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 8.4e-44 182.2 416 36.3
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 5.4e-43 179.5 176 57.4
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 7.1e-43 179.1 133 66.9
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 6.0e-42 176.0 210 51.9
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.3e-41 174.9 152 63.2
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 2.3e-41 174.1 417 36.0
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 4.3e-40 169.9 427 37.5
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 4.7e-39 166.4 204 46.6
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 8.1e-39 165.6 209 46.4
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 2.2e-36 157.5 422 41.0
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 4.9e-36 156.4 424 41.7
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 6.4e-36 156.0 422 40.8
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 1.9e-35 154.5 223 41.7
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 2.4e-35 154.1 422 40.8
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 4.2e-35 153.3 357 36.4
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 2.5e-32 144.1 202 48.0
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 3.6e-31 140.2 161 47.2
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 3.1e-30 137.1 208 46.6
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 1.7e-28 131.3 124 53.2
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 1.4e-27 128.3 366 41.3
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 5.4e-27 126.3 166 51.2
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 2.1e-26 124.4 225 35.6
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 6.7e-25 119.4 109 56.9
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 8.7e-25 119.0 209 43.1
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 2.1e-23 114.4 127 46.5
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 3.7e-23 113.6 354 36.4
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 1.4e-22 111.7 399 27.8
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 4.0e-22 110.2 77 71.4
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 2.0e-21 107.8 68 76.5
vmacro15912 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 2.0e-21 107.8 236 49.2
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 5.8e-21 106.3 82 72.0
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 7.6e-21 105.9 89 58.4
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 6.0e-18 96.3 146 47.3
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 2.1e-15 87.8 106 46.2
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.4e-14 84.3 116 44.8
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 3.4e-13 80.5 176 35.2
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 2.2e-12 77.8 140 39.3
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 3.8e-12 77.0 122 37.7
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 8.4e-12 75.9 173 35.3
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 2.5e-11 74.3 45 71.1
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 2.1e-10 71.2 300 31.3
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 4.6e-10 70.1 86 44.2
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 1.8e-09 68.2 84 44.0
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 2.3e-09 67.8 84 42.9
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 3.9e-09 67.0 84 42.9
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 3.3e-08 63.9 356 24.7
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 3.3e-08 63.9 174 33.3
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 6.3e-07 59.7 301 34.6
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 1.4e-06 58.5 61 47.5
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 1.8e-06 58.2 56 55.4
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 1.8e-06 58.2 56 53.6


User provided reference genes

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