Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044848 Camellia sinensis var. sinensis HOM05D024952 ORTHO05D004688 2.0e-71 272.3 136 100.0
CSS0012342 Camellia sinensis var. sinensis HOM05D024952 ORTHO05D004688 6.2e-65 250.8 143 90.2
CSS0042318 Camellia sinensis var. sinensis HOM05D024952 ORTHO05D004688 6.2e-65 250.8 143 90.2
CSS0016850 Camellia sinensis var. sinensis HOM05D024952 ORTHO05D004688 6.8e-64 247.3 144 88.9
CSS0012683 Camellia sinensis var. sinensis HOM05D024952 ORTHO05D004688 3.6e-57 224.9 144 84.7
CSS0004736 Camellia sinensis var. sinensis HOM05D003988 ORTHO05D004688 6.1e-20 101.3 61 86.9
Cfa019762 Carpinus fangiana HOM05D003988 ORTHO05D004688 1.3e-09 67.0 74 48.6
Dinv15683 Davidia involucrata HOM05D003988 ORTHO05D004688 1.3e-09 67.0 59 59.3
Actinidia18930 Actinidia chinensis HOM05D003988 ORTHO05D004688 3.7e-09 65.5 61 55.7
Lj5C149G16 Lonicera japonica HOM05D003988 ORTHO05D004688 4.8e-09 65.1 61 54.1
Rhsim08G0133900 Rhododendron simsii HOM05D003988 ORTHO05D004688 4.8e-09 65.1 61 54.1
Hma1.2p1_0653F.1_g196250 Hydrangea macrophylla HOM05D003988 ORTHO05D004688 8.2e-09 64.3 73 50.7
CiPaw.16G086900 Carya illinoinensis HOM05D003988 ORTHO05D004688 2.4e-08 62.8 61 50.8
CSS0009918 Camellia sinensis var. sinensis HOM05D003988 ORTHO05D004688 3.1e-08 62.4 61 54.1
GSVIVG01008297001 Vitis vinifera HOM05D003988 ORTHO05D004688 5.3e-08 61.6 58 48.3
Actinidia35091 Actinidia chinensis HOM05D003988 ORTHO05D004688 7.0e-08 61.2 61 52.5
vmacro17712 Vaccinium macrocarpon HOM05D003988 ORTHO05D004688 7.0e-08 61.2 61 52.5
COL.COLO4_32832 Corchorus olitorius HOM05D003988 ORTHO05D004688 1.2e-07 60.5 72 45.8
Thecc.03G036400 Theobroma cacao HOM05D003988 ORTHO05D004688 1.2e-07 60.5 72 44.4
vmacro16441 Vaccinium macrocarpon HOM05D003988 ORTHO05D004688 1.2e-07 60.5 61 54.1
Lsat_1_v5_gn_8_146920 Lactuca sativa HOM05D003988 ORTHO05D004688 2.6e-07 59.3 72 47.2
Potri.012G056000 Populus trichocarpa HOM05D003988 ORTHO05D004688 2.6e-07 59.3 46 65.2
Nitab4.5_0009306g0030 Nicotiana tabacum HOM05D003988 ORTHO05D004688 4.5e-07 58.5 59 49.2
DCAR_023207 Daucus carota HOM05D003988 ORTHO05D004688 5.9e-07 58.2 59 49.2
QL10p025473 Quercus lobata HOM05D003988 ORTHO05D004688 5.9e-07 58.2 58 50.0
Cc04_g07060 Coffea canephora HOM05D003988 ORTHO05D004688 7.7e-07 57.8 61 47.5
Duzib205G1863 Durio zibethinus HOM05D003988 ORTHO05D004688 7.7e-07 57.8 72 44.4
Eucgr.K02227 Eucalyptus grandis HOM05D003988 ORTHO05D004688 1.0e-06 57.4 61 50.8
Ciclev10018856m.g Citrus clementina HOM05D003988 ORTHO05D004688 1.3e-06 57.0 51 52.9
Dinv28109 Davidia involucrata HOM05D003988 ORTHO05D004688 1.3e-06 57.0 61 50.8
Rhsim12G0143000 Rhododendron simsii HOM05D003988 ORTHO05D004688 1.3e-06 57.0 61 50.8
CANSAT80G2599 Cannabis sativa HOM05D003988 ORTHO05D004688 1.7e-06 56.6 61 45.9
MD14G1227200 Malus domestica HOM05D003988 ORTHO05D004688 1.7e-06 56.6 61 45.9
Nitab4.5_0002906g0030 Nicotiana tabacum HOM05D003988 ORTHO05D004688 1.7e-06 56.6 59 49.2
Manes.05G113166 Manihot esculenta HOM05D003988 ORTHO05D004688 2.2e-06 56.2 51 56.9
Sed0007612 Sechium edule HOM05D003988 ORTHO05D004688 2.2e-06 56.2 51 47.1
FAN13G2567 Fragaria x ananassa HOM05D003988 ORTHO05D004688 2.9e-06 55.8 71 43.7
Lj2g0015725 Lotus japonicus HOM05D003988 ORTHO05D004688 2.9e-06 55.8 65 41.5
Os01g0128800 Oryza sativa ssp. japonica HOM05D003988 ORTHO05D004688 2.9e-06 55.8 61 45.9
FvH4_5g12040 Fragaria vesca HOM05D003988 ORTHO05D004688 3.8e-06 55.5 74 41.9
FAN08G2998 Fragaria x ananassa HOM05D003988 ORTHO05D004688 3.8e-06 55.5 71 42.3
Gohir.A12G266600 Gossypium hirsutum HOM05D003988 ORTHO05D004688 3.8e-06 55.5 72 37.5
Sed0017030 Sechium edule HOM05D003988 ORTHO05D004688 3.8e-06 55.5 41 63.4
MELO3C002088.2 Cucumis melo HOM05D003988 ORTHO05D004688 5.0e-06 55.1 41 63.4
FAN04G0415 Fragaria x ananassa HOM05D003988 ORTHO05D004688 5.0e-06 55.1 71 42.3
HanXRQChr08g0226051 Helianthus annuus HOM05D003988 ORTHO05D004688 5.0e-06 55.1 61 47.5
Prupe.5G221900 Prunus persica HOM05D003988 ORTHO05D004688 5.0e-06 55.1 61 45.9
Atru.chr9.851 Acer truncatum HOM05D003988 ORTHO05D004688 6.5e-06 54.7 59 47.5
CsaV3_1G006640 Cucumis sativus L. HOM05D003988 ORTHO05D004688 6.5e-06 54.7 41 63.4
FAN18G4152 Fragaria x ananassa HOM05D003988 ORTHO05D004688 6.5e-06 54.7 74 41.9
FAN18G4386 Fragaria x ananassa HOM05D003988 ORTHO05D004688 6.5e-06 54.7 74 41.9
MD06G1216700 Malus domestica HOM05D003988 ORTHO05D004688 6.5e-06 54.7 74 40.5
TWI81G0944 Tripterygium wilfordii HOM05D003988 ORTHO05D004688 6.5e-06 54.7 59 47.5
ClCG04G011120 Citrullus lanatus HOM05D003988 ORTHO05D004688 8.5e-06 54.3 41 61.0
Lalb_Chr14g0371121 Lupinus albus HOM05D003988 ORTHO05D004688 8.5e-06 54.3 64 48.4


User provided reference genes

Program Settings