Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 9.0e-27 122.9 63 100.0
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 4.5e-26 120.6 63 98.4
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 6.5e-25 116.7 63 96.8
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 1.9e-13 78.6 55 78.2
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 2.2e-12 75.1 56 76.8
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 2.2e-12 75.1 45 86.7
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 2.8e-12 74.7 50 80.0
CSS0027872 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 8.2e-12 73.2 45 84.4
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 8.2e-12 73.2 45 86.7
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 1.1e-11 72.8 48 81.2
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 1.4e-11 72.4 47 83.0
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 1.4e-11 72.4 52 78.8
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 1.4e-11 72.4 50 78.0
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 1.8e-11 72.0 52 75.0
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 1.8e-11 72.0 49 77.6
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 2.4e-11 71.6 45 84.4
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 2.4e-11 71.6 44 86.4
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 4.1e-11 70.9 46 82.6
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 4.1e-11 70.9 43 88.4
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 9.1e-11 69.7 46 82.6
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 9.1e-11 69.7 49 75.5
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 1.2e-10 69.3 45 82.2
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 2.0e-10 68.6 52 76.9
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 2.0e-10 68.6 52 75.0
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 2.0e-10 68.6 43 86.0
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 2.6e-10 68.2 40 90.0
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 2.6e-10 68.2 49 75.5
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 3.4e-10 67.8 60 71.7
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 3.4e-10 67.8 50 76.0
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 4.5e-10 67.4 40 90.0
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 5.9e-10 67.0 49 75.5
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.9e-10 67.0 47 74.5
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 5.9e-10 67.0 47 74.5
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 5.9e-10 67.0 43 81.4
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 5.9e-10 67.0 43 81.4
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 5.9e-10 67.0 44 77.3
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 7.7e-10 66.6 46 76.1
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 7.7e-10 66.6 46 76.1
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 7.7e-10 66.6 46 76.1
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.0e-09 66.2 45 77.8
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 1.3e-09 65.9 40 85.0
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 2.2e-09 65.1 46 80.4
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 2.2e-09 65.1 45 82.2
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 2.9e-09 64.7 40 85.0
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 2.9e-09 64.7 44 81.8
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 3.8e-09 64.3 50 68.0
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 5.0e-09 63.9 40 85.0
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 5.0e-09 63.9 40 82.5
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 6.5e-09 63.5 40 85.0
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 6.5e-09 63.5 40 82.5
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 1.1e-08 62.8 43 81.4
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 1.4e-08 62.4 40 82.5
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 1.4e-08 62.4 40 82.5
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 1.4e-08 62.4 40 82.5
Gorai.005G060300 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.4e-08 62.4 45 75.6
HanXRQChr06g0169061 Helianthus annuus HOM05D003821 ORTHO05D004449 1.9e-08 62.0 46 73.9
GSVIVG01027975001 Vitis vinifera HOM05D003821 ORTHO05D004449 2.5e-08 61.6 48 72.9
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 4.2e-08 60.8 46 76.1
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 4.2e-08 60.8 40 77.5
Gorai.N022500 Gossypium raimondii HOM05D003821 ORTHO05D004449 4.2e-08 60.8 48 66.7
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 4.2e-08 60.8 40 80.0
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 5.5e-08 60.5 40 80.0
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 5.5e-08 60.5 50 70.0
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 7.2e-08 60.1 40 80.0
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 9.4e-08 59.7 40 75.0
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 1.2e-07 59.3 39 82.1
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 1.6e-07 58.9 40 80.0
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 2.7e-07 58.2 40 77.5
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 3.6e-07 57.8 42 76.2
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 3.6e-07 57.8 40 72.5
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.6e-07 57.8 40 77.5
HanXRQChr01g0001301 Helianthus annuus HOM05D003821 ORTHO05D004449 3.6e-07 57.8 49 69.4
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 3.6e-07 57.8 40 80.0
Ah.08g213210 Amaranthus hybridus HOM05D003821 ORTHO05D004449 7.9e-07 56.6 57 61.4
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 1.4e-06 55.8 40 75.0
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.8e-06 55.5 40 75.0
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 1.8e-06 55.5 40 75.0
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 3.0e-06 54.7 40 75.0
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 8.8e-06 53.1 75 46.7
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 8.8e-06 53.1 40 67.5


User provided reference genes

Program Settings