Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044840 Camellia sinensis var. sinensis HOM05D007676 ORTHO05D009456 4.4e-67 257.7 119 100.0
Rhsim06G0138800 Rhododendron simsii HOM05D000658 ORTHO05D000826 1.4e-17 93.2 78 50.0
Manes.13G143800 Manihot esculenta HOM05D007676 ORTHO05D009456 1.3e-13 80.1 91 41.8
Peaxi162Scf00008g00063 Petunia axillaris HOM05D007676 ORTHO05D009456 2.8e-13 79.0 116 41.4
Gohir.D01G017700 Gossypium hirsutum HOM05D007676 ORTHO05D009456 1.0e-10 70.5 107 35.5
Gorai.002G020000 Gossypium raimondii HOM05D007676 ORTHO05D009456 3.8e-10 68.6 107 34.6
Gohir.A01G019100 Gossypium hirsutum HOM05D007676 ORTHO05D009456 5.0e-10 68.2 107 34.6
Thecc.01G343500 Theobroma cacao HOM05D000275 ORTHO05D000181 5.0e-10 68.2 123 35.0
vmacro12332 Vaccinium macrocarpon HOM05D000658 ORTHO05D000826 2.5e-09 65.9 69 47.8
Thecc.02G183500 Theobroma cacao HOM05D007676 ORTHO05D009456 3.2e-09 65.5 101 30.7
Manes.12G089100 Manihot esculenta HOM05D007676 ORTHO05D009456 9.4e-09 63.9 119 35.3
FAN10G1205 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.6e-08 63.2 125 27.2
FAN10G2621 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.6e-08 63.2 125 27.2
Solyc10g008205.2 Solanum lycopersicum HOM05D007676 ORTHO05D009456 2.1e-08 62.8 94 36.2
FvH4_7g16320 Fragaria vesca HOM05D000275 ORTHO05D000181 2.7e-08 62.4 120 29.2
FAN06G2922 Fragaria x ananassa HOM05D000275 ORTHO05D000181 2.7e-08 62.4 120 29.2
FAN06G3596 Fragaria x ananassa HOM05D000275 ORTHO05D000181 2.7e-08 62.4 120 29.2
Ciclev10018195m.g Citrus clementina HOM05D007676 ORTHO05D009456 4.7e-08 61.6 119 32.8
FAN03G3319 Fragaria x ananassa HOM05D000275 ORTHO05D000181 7.9e-08 60.8 118 28.8
RcHm_v2.0_Chr2g0127571 Rosa chinensis HOM05D007676 ORTHO05D009456 1.4e-07 60.1 77 33.8
RcHm_v2.0_Chr2g0127591 Rosa chinensis HOM05D007676 ORTHO05D009456 1.4e-07 60.1 114 30.7
Eucgr.A01837 Eucalyptus grandis HOM05D007676 ORTHO05D009456 1.8e-07 59.7 101 31.7
TPR.G4950 Trifolium pratense HOM05D000275 ORTHO05D000181 6.7e-07 57.8 101 31.7
Carub.0007s1233 Capsella rubella HOM05D007676 ORTHO05D009456 1.1e-06 57.0 127 29.1
MBI02_g15133_MAGBIO Magnolia biondii HOM05D000275 ORTHO05D000181 1.5e-06 56.6 105 28.6
Nn4g24938 Nelumbo nucifera HOM05D000275 ORTHO05D000181 2.0e-06 56.2 95 30.5
C07p56160 Brassica napus HOM05D000223 ORTHO05D000736 2.6e-06 55.8 128 28.9
Potri.007G138400 Populus trichocarpa HOM05D007676 ORTHO05D009456 3.3e-06 55.5 112 33.0
Manes.05G054100 Manihot esculenta HOM05D000275 ORTHO05D000181 4.4e-06 55.1 101 29.7
BolC7t46093H Brassica oleracea HOM05D007676 ORTHO05D009456 5.7e-06 54.7 128 28.1
Migut.N01742 Erythranthe guttata HOM05D000275 ORTHO05D000181 5.7e-06 54.7 113 28.3
Migut.N01746 Erythranthe guttata HOM05D000275 ORTHO05D000181 7.4e-06 54.3 113 28.3
Migut.N01747 Erythranthe guttata HOM05D000275 ORTHO05D000181 7.4e-06 54.3 113 28.3
Migut.N01748 Erythranthe guttata HOM05D000275 ORTHO05D000181 7.4e-06 54.3 113 28.3
MBI02_g11175_MAGBIO Magnolia biondii HOM05D000275 ORTHO05D000181 9.7e-06 53.9 102 25.5
MBI02_g17304_MAGBIO Magnolia biondii HOM05D000275 ORTHO05D000181 9.7e-06 53.9 102 25.5


User provided reference genes

Program Settings